genome.fa.s26.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  24  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6728821--6728880	27	2.2	27	82	11	70	20	5	0	75	0.99
6729891--6729920	15	1.9	15	93	6	51	86	3	10	0	0.67
6729891--6729921	16	1.9	16	93	0	53	87	3	9	0	0.66
6731693--6731727	13	2.6	13	90	4	52	25	0	0	74	0.82
6732092--6732529	218	2.0	218	82	4	535	28	25	18	27	1.98
6732510--6732765	44	5.8	44	85	1	318	27	26	17	29	1.97
6735012--6735080	27	2.5	26	82	17	79	13	2	4	79	0.99
6739833--6739974	23	6.0	22	68	16	63	54	5	6	33	1.49
6740048--6740096	20	2.5	20	83	3	55	63	6	2	28	1.30
6748733--6748770	20	1.9	20	89	10	60	60	5	0	34	1.19
6758877--6759139	40	6.6	40	88	3	325	26	27	20	24	1.99
6776041--6776099	30	2.0	28	87	6	82	79	3	0	16	0.86
6787130--6787169	20	2.0	21	85	5	55	40	5	2	52	1.37
6794973--6795014	15	2.7	15	85	3	57	33	35	7	23	1.82
6800419--6800569	75	2.0	75	98	0	293	38	7	13	41	1.72
6807038--6807074	9	4.1	9	92	0	65	45	13	10	29	1.77
6808099--6808124	5	5.2	5	100	0	52	19	19	19	42	1.90
6808592--6808624	10	3.0	11	86	13	50	18	6	3	72	1.18
6809389--6809449	18	3.2	19	75	15	56	27	13	1	57	1.46
6809518--6809552	18	1.9	18	88	0	52	34	5	0	60	1.21
6818912--6819613	143	4.9	143	89	1	1057	29	20	22	27	1.98
6820302--6820339	19	2.0	20	94	5	69	7	13	0	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6820302--6820339	20	1.9	19	89	5	58	7	13	0	78	0.94
6821137--6821545	26	16.1	25	71	11	176	29	7	3	59	1.42
6821377--6821547	50	3.4	48	76	13	166	25	7	3	63	1.37
6821390--6821529	50	2.7	50	84	3	181	27	7	2	62	1.37
6823494--6823538	5	9.4	5	77	18	51	22	20	13	44	1.85
6823494--6823547	9	5.8	9	80	20	58	24	18	12	44	1.85
6823494--6823547	19	2.9	18	77	22	58	24	18	12	44	1.85
6823500--6823540	19	2.1	19	90	9	64	24	19	12	43	1.85
6826242--6826291	6	8.0	6	84	8	64	86	0	12	2	0.67
6826234--6826291	18	3.0	19	85	7	73	84	0	10	5	0.77
6826233--6826284	26	1.9	27	92	7	88	84	0	7	7	0.77
6827900--6828090	36	5.0	36	81	12	220	37	13	20	28	1.91
6827864--6828054	82	2.3	82	93	0	319	37	12	20	29	1.90
6835554--6835744	36	5.0	36	82	12	247	37	12	20	29	1.90
6835518--6835708	82	2.3	82	94	0	328	37	11	21	29	1.89
6837733--6838929	143	8.4	143	84	1	1459	30	19	21	28	1.97
6839490--6839533	18	2.5	18	81	3	54	75	4	9	11	1.19
6839587--6839625	19	2.0	21	85	10	55	10	12	2	74	1.17
6840370--6840475	27	3.9	27	80	10	119	29	8	0	61	1.32
6840354--6840493	25	5.5	25	75	16	85	29	7	2	60	1.36
6840370--6840699	26	13.0	25	71	13	169	29	6	4	60	1.40
6840635--6840699	27	2.4	28	87	7	91	29	3	1	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6840643--6840710	27	2.8	23	75	25	68	29	4	0	66	1.11
6840644--6840783	50	2.8	47	75	15	122	30	7	2	60	1.38
6842860--6843134	147	1.9	147	89	0	424	29	10	40	20	1.85
6843552--6843593	20	2.1	20	95	0	75	42	9	21	26	1.83
6849993--6850094	43	2.4	43	76	12	102	28	28	20	22	1.99
6861021--6861084	28	2.3	26	80	15	67	37	3	6	53	1.42
6873557--6873616	12	4.9	12	74	22	54	46	1	1	50	1.21
6877159--6877433	147	1.9	147	88	0	415	28	10	41	18	1.84
6887789--6887859	22	3.1	23	75	6	72	35	16	16	30	1.92
6889735--6889781	22	2.1	23	84	4	60	36	4	8	51	1.52
6889940--6890063	65	2.0	64	84	7	166	43	17	8	30	1.78
6890367--6890398	15	2.2	15	94	5	57	31	0	6	62	1.20
6892443--6892572	63	2.1	63	83	2	163	28	20	27	23	1.99
6895378--6895420	23	1.9	23	86	13	63	27	4	18	48	1.68
6897241--6897267	14	1.9	14	100	0	54	51	7	0	40	1.30
6897585--6897674	21	4.1	21	70	14	65	43	14	12	30	1.82
6897585--6898118	47	11.5	47	91	1	828	41	14	11	32	1.82
6897585--6898118	140	3.8	141	92	1	837	41	14	11	32	1.82
6898371--6898405	15	2.3	15	90	9	54	51	22	0	25	1.48
6899063--6899180	43	2.7	43	79	8	123	32	29	18	19	1.96
6903585--6903619	15	2.3	15	100	0	70	22	48	22	5	1.72
6903580--6903619	15	2.7	14	92	3	53	20	45	25	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903848--6903900	19	3.0	17	78	10	61	35	7	18	37	1.80
6903872--6903916	23	2.0	23	91	4	74	37	4	17	40	1.70
6903882--6903926	23	2.0	23	86	4	65	33	4	15	46	1.66
6904104--6904142	19	2.0	21	85	10	55	15	10	5	69	1.34
6941825--6941903	31	2.5	31	89	0	122	13	36	27	21	1.92
6951802--6953307	44	33.8	44	70	13	452	28	21	18	31	1.97
6951716--6952236	223	2.3	223	86	4	728	28	22	18	31	1.97
6952071--6952375	137	2.2	137	86	2	425	29	20	18	31	1.97
6951802--6952598	360	2.2	359	88	2	1186	28	20	18	31	1.97
6952167--6952728	223	2.5	223	85	2	705	29	21	18	30	1.97
6952529--6953040	174	2.9	176	81	5	527	28	23	18	29	1.98
6952705--6953208	268	1.9	268	88	1	760	27	24	17	30	1.97
6952922--6953317	178	2.2	178	89	0	596	27	23	18	31	1.97
6952705--6953218	90	5.8	90	77	7	424	28	24	17	29	1.97
6954566--6954661	49	1.9	50	95	2	176	12	22	22	41	1.88
6955585--6955622	18	2.2	18	90	4	60	0	21	0	78	0.74
6955640--6955708	31	2.2	30	87	12	104	23	2	2	71	1.14
6955641--6955708	32	2.2	31	92	7	111	22	2	2	72	1.12
6959614--6959652	4	9.8	4	100	0	78	25	0	23	51	1.49
6960628--6960652	7	3.6	7	100	0	50	0	16	0	84	0.63
6966582--6966662	28	2.9	28	92	1	137	32	13	16	38	1.87
6970707--6970822	44	2.6	44	74	8	119	23	25	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6970837--6971041	44	4.6	45	76	6	141	30	22	17	29	1.96
6970603--6971142	218	2.5	217	86	0	695	28	22	18	29	1.98
6971138--6971776	128	4.9	128	86	3	693	26	24	18	30	1.98
6971138--6971776	132	4.9	129	84	5	688	26	24	18	30	1.98
6973002--6973035	15	2.3	15	94	0	59	14	8	0	76	1.01
6976737--6976931	108	1.8	106	88	4	302	35	16	16	30	1.92
6977861--6977960	3	33.3	3	82	4	103	61	3	6	30	1.35
6983919--6983960	17	2.4	18	80	15	52	69	2	4	23	1.20
6983966--6983990	5	5.0	5	100	0	50	80	0	0	20	0.72
6984202--6984234	16	2.1	16	88	11	50	48	0	0	51	1.00
6985814--6985879	8	7.5	8	76	15	51	65	1	1	31	1.11
6985802--6985883	37	2.2	37	83	10	105	68	1	1	29	1.05
6985802--6985920	10	12.4	10	70	15	56	64	2	1	31	1.16
6986228--6986279	19	2.7	20	80	14	63	26	7	3	61	1.41
6986303--6986364	28	2.3	27	83	8	72	37	0	1	61	1.06
6987345--6987398	17	3.1	17	81	10	56	31	0	0	68	0.90
6989780--6989865	24	3.6	24	98	0	163	32	41	4	20	1.73
6990983--6991045	31	2.0	31	93	0	108	15	4	20	58	1.55
6994742--6994866	12	9.8	12	69	17	56	52	8	13	26	1.68
6994750--6994866	25	4.6	25	74	17	87	52	8	13	25	1.69
6994809--6994873	14	4.6	14	75	7	60	55	7	12	24	1.63
6994862--6994901	21	1.9	21	85	10	55	65	7	12	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6996203--6996260	6	9.3	6	82	14	55	74	0	3	22	0.97
6996204--6996260	19	3.1	18	78	16	55	73	0	3	22	0.98
6999688--6999813	12	9.8	12	68	13	63	52	7	14	25	1.68
6999756--6999813	14	4.2	13	76	12	53	56	6	13	22	1.61
7000627--7000681	27	2.0	26	82	6	65	40	3	3	52	1.36
7003987--7004021	15	2.3	15	100	0	70	42	28	0	28	1.56
7016898--7016943	14	3.5	14	71	17	53	65	0	4	30	1.12
7016926--7016969	23	1.9	23	86	9	63	61	2	6	29	1.34
7016942--7016980	16	2.4	17	91	4	62	58	7	5	28	1.47
7019167--7019220	18	3.0	18	86	5	74	35	9	0	55	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221