genome.fa.s26.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  181  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54008670--54008787	30	4.0	28	75	13	94	29	22	3	44	1.69
54008667--54008794	60	2.1	60	78	5	143	32	20	3	43	1.67
54009037--54009083	17	2.8	17	84	12	62	68	0	31	0	0.90
54009034--54009083	19	2.7	20	81	12	61	68	0	32	0	0.90
54009138--54009208	3	24.0	3	75	16	60	70	0	29	0	0.88
54009141--54009169	10	2.9	10	100	0	58	62	0	37	0	0.96
54009165--54009209	17	2.6	17	80	13	56	77	0	22	0	0.76
54009141--54009207	34	2.0	34	84	0	89	70	0	29	0	0.88
54009176--54009209	17	1.9	17	94	5	59	82	0	17	0	0.67
54009457--54009523	21	3.3	21	78	12	68	77	0	22	0	0.77
54009455--54009525	10	6.5	10	81	15	70	76	0	23	0	0.79
54009859--54010356	16	29.3	18	69	16	212	31	11	11	44	1.77
54009837--54009915	16	4.6	16	76	10	68	31	16	8	43	1.79
54009859--54010126	35	7.6	35	73	12	151	32	13	11	43	1.79
54009906--54010074	71	2.4	73	82	5	184	33	13	10	43	1.77
54010036--54010214	35	5.1	34	77	12	150	31	11	12	44	1.78
54010256--54010307	15	3.3	15	73	19	52	32	9	13	44	1.76
54009856--54010356	17	29.5	17	67	18	147	31	11	11	44	1.77
54010335--54010387	20	2.6	20	77	14	63	43	9	7	39	1.65
54010376--54010412	17	2.3	17	81	9	51	37	16	10	35	1.83
54018405--54019421	192	5.3	192	97	0	1921	30	13	21	35	1.91
54018405--54019421	383	2.7	384	97	0	1921	30	13	21	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54019242--54019557	121	2.6	122	90	3	492	26	14	22	36	1.92
54019541--54019574	16	2.1	17	88	5	52	17	11	5	64	1.45
54019480--54019723	91	2.7	87	82	9	273	27	18	18	35	1.95
54019480--54019738	85	2.9	88	81	10	300	27	17	18	37	1.93
54019837--54020054	54	4.1	55	87	8	315	29	16	16	37	1.91
54020325--54020426	30	3.4	31	83	5	122	29	22	3	44	1.71
54020785--54020855	3	24.0	3	75	16	60	70	0	29	0	0.88
54020788--54020816	10	2.9	10	100	0	58	62	0	37	0	0.96
54020812--54020856	17	2.6	17	80	13	56	77	0	22	0	0.76
54020788--54020854	34	2.0	34	84	0	89	70	0	29	0	0.88
54020823--54020856	17	1.9	17	94	5	59	82	0	17	0	0.67
54020929--54020972	21	2.2	20	84	11	56	79	11	9	0	0.93
54021107--54021157	9	5.6	9	75	11	50	82	0	17	0	0.67
54021105--54021157	14	3.7	14	73	11	54	81	0	18	0	0.70
54021105--54021160	20	2.8	20	82	10	71	80	0	19	0	0.71
54021491--54022003	17	29.6	18	70	13	276	33	11	11	43	1.76
54021473--54021641	34	4.8	34	73	13	108	31	14	8	45	1.74
54021496--54021549	16	3.2	16	75	14	56	35	14	9	40	1.78
54021586--54021668	36	2.3	37	82	2	105	37	15	9	37	1.81
54021508--54022004	35	14.3	34	71	16	197	33	11	11	43	1.77
54026423--54026722	169	1.8	162	88	5	456	31	17	14	38	1.89
54027918--54028000	27	3.1	27	82	0	94	27	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54032064--54032098	12	2.9	12	91	0	52	17	2	0	80	0.84
54032793--54032832	9	4.4	10	81	18	52	40	5	0	55	1.22
54033513--54033554	21	2.2	20	83	12	52	30	0	2	66	1.04
54033509--54033555	19	2.6	18	77	12	51	34	0	2	63	1.06
54040445--54040470	12	2.2	12	100	0	52	38	23	15	23	1.92
54041026--54041068	12	3.6	12	83	0	50	65	11	0	23	1.25
54043892--54043932	9	4.2	10	76	17	50	36	0	2	60	1.10
54043884--54043926	18	2.4	18	81	11	54	34	0	2	62	1.08
54052683--54053129	44	10.1	44	72	5	301	25	22	19	32	1.97
54052683--54053044	88	4.1	88	82	4	417	25	23	18	32	1.97
54052757--54053044	132	2.2	131	86	3	398	25	22	18	32	1.97
54052574--54053044	177	2.7	177	79	5	488	27	22	18	31	1.97
54052683--54053096	88	4.7	86	81	6	348	25	23	19	31	1.98
54052680--54053122	220	2.0	220	84	2	566	26	23	19	31	1.98
54067858--54067954	48	2.0	48	100	0	194	26	14	12	46	1.80
54070927--54071018	34	2.7	34	91	0	139	27	5	30	36	1.79
54072218--54072279	31	2.0	31	100	0	124	12	16	12	58	1.64
54091276--54091314	12	3.4	11	86	10	51	82	7	10	0	0.86
54091284--54091309	12	2.2	12	100	0	52	84	7	7	0	0.77
54091291--54091324	15	2.2	15	89	5	50	82	2	14	0	0.79
54091273--54091325	27	2.0	27	85	14	74	83	5	11	0	0.81
54092167--54092906	75	9.7	74	81	8	637	28	16	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54092167--54092906	149	4.9	149	81	8	699	28	16	19	36	1.93
54093817--54093872	15	3.8	16	77	17	59	67	0	32	0	0.91
54093822--54093872	7	7.1	7	78	12	50	70	0	29	0	0.87
54093833--54093902	21	3.0	24	76	14	67	77	0	20	2	0.90
54093826--54093867	11	3.9	11	84	12	52	73	0	26	0	0.83
54093866--54093915	15	3.2	16	80	11	59	76	0	18	6	0.99
54093833--54093906	17	4.7	15	80	9	60	77	0	20	2	0.90
54093921--54093977	5	11.4	5	75	14	55	19	52	21	7	1.69
54094028--54094077	26	2.0	25	85	14	68	56	24	18	2	1.52
54094567--54094603	16	2.2	18	90	9	60	18	0	2	78	0.87
54094756--54094955	16	11.5	17	72	16	142	31	12	12	44	1.78
54094784--54095037	74	3.5	71	82	9	225	33	10	11	44	1.74
54094767--54095037	35	7.7	35	77	10	218	33	10	11	44	1.74
54094834--54095040	74	2.8	74	86	5	271	33	11	10	44	1.73
54094899--54095070	74	2.3	74	85	4	193	33	10	10	45	1.73
54106779--54106850	36	2.0	35	86	2	99	36	8	26	29	1.86
54111889--54111960	36	2.0	35	86	2	99	37	9	22	30	1.86
54112400--54112441	20	2.1	20	95	0	75	26	9	26	38	1.87
54124206--54124246	19	2.2	19	86	4	57	26	0	36	36	1.57
54125522--54125562	21	2.0	21	90	9	66	68	0	2	29	1.03
54129916--54129960	24	1.9	24	86	4	65	57	6	4	31	1.44
54132132--54132217	43	2.0	43	90	4	138	23	23	1	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54135196--54135271	21	3.7	21	84	7	111	38	11	9	40	1.74
54135209--54135272	19	3.3	19	91	4	92	39	14	7	39	1.74
54136389--54136444	9	6.4	9	83	6	71	35	21	8	33	1.85
54136389--54136444	17	3.2	18	82	7	71	35	21	8	33	1.85
54136389--54136444	26	2.2	26	90	0	85	35	21	8	33	1.85
54138042--54138078	20	1.9	19	89	10	58	21	16	16	45	1.84
54139864--54139932	35	2.0	35	91	0	111	42	28	4	24	1.74
54158609--54158681	20	3.8	19	80	7	76	76	1	19	2	0.98
54158620--54158681	6	10.0	6	77	16	56	77	1	17	3	0.98
54159893--54160157	45	5.9	45	73	8	157	29	22	23	25	1.99
54159898--54160162	89	3.0	89	78	4	273	29	23	22	24	1.99
54160368--54160771	44	9.4	44	71	9	260	26	20	20	31	1.97
54160415--54160771	129	2.8	129	93	0	633	26	20	20	31	1.97
54160366--54160771	85	4.7	85	73	7	311	27	20	20	31	1.97
54162163--54162230	20	3.4	19	92	8	109	32	0	26	41	1.56
54162237--54162497	35	7.5	35	70	7	192	22	24	22	29	1.99
54162237--54162504	69	3.9	69	87	0	365	22	25	22	29	1.99
54163011--54163054	20	2.2	20	95	0	79	34	0	27	38	1.57
54163076--54163325	35	7.2	35	70	8	179	24	23	20	31	1.98
54163094--54163340	34	7.2	34	66	11	117	24	23	20	32	1.98
54163080--54163340	69	3.8	69	84	0	324	24	23	19	32	1.98
54163076--54163331	138	1.9	138	85	0	359	24	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54161663--54164139	828	3.0	828	94	1	4140	32	12	18	37	1.88
54163838--54163881	20	2.2	20	91	0	70	36	0	25	38	1.56
54163892--54164190	35	8.5	35	68	11	166	22	21	22	33	1.97
54163908--54164102	67	2.9	67	81	4	203	23	21	22	33	1.97
54163892--54164148	69	3.8	69	79	2	275	22	21	23	32	1.98
54165206--54165249	23	1.9	23	81	9	54	43	4	15	36	1.68
54166923--54166966	18	2.4	19	85	11	65	25	9	0	65	1.21
54172650--54172717	25	2.9	23	80	6	82	41	2	0	55	1.15
54172658--54172717	23	2.5	25	86	5	79	41	3	0	55	1.16
54177968--54178003	18	1.9	20	88	11	58	55	2	11	30	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221