genome.fa.s26.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  155  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46933611--46933669	29	2.0	29	96	0	109	27	20	11	40	1.87
46942230--46942318	44	2.0	44	97	0	169	46	11	15	26	1.80
46953769--46953799	16	1.9	16	100	0	62	35	6	19	38	1.77
46953976--46954014	17	2.3	17	86	8	53	23	2	5	69	1.21
46954902--46954957	28	2.0	28	92	0	94	32	21	14	32	1.93
46956038--46956073	18	2.0	18	94	0	63	50	25	5	19	1.69
46959103--46959133	16	1.9	16	93	0	53	67	0	0	32	0.91
46960198--46960229	15	2.1	15	100	0	64	18	18	56	6	1.62
46961011--46961053	21	2.0	21	95	0	77	37	4	25	32	1.77
46965156--46965240	41	2.1	41	93	0	143	40	21	14	24	1.90
46966172--46966208	14	2.6	14	91	0	65	21	18	29	29	1.97
46973971--46974066	45	2.1	45	98	0	183	41	6	11	40	1.66
46973971--46974041	21	3.2	21	63	18	54	40	5	11	42	1.64
46975097--46975135	18	2.1	19	90	4	62	58	0	5	35	1.20
46989422--46989480	29	2.0	29	96	0	109	27	20	11	40	1.87
46998047--46998135	44	2.0	44	97	0	169	46	11	15	26	1.80
47009564--47009594	16	1.9	16	100	0	62	35	6	19	38	1.77
47009769--47009807	17	2.3	17	86	8	53	23	2	5	69	1.21
47010695--47010750	28	2.0	28	92	0	94	32	21	14	32	1.93
47011827--47011862	18	2.0	18	94	0	63	50	25	5	19	1.69
47013376--47013434	1	59.0	1	100	0	118	100	0	0	0	0.00
47013475--47013519	1	45.0	1	95	0	81	97	0	0	2	0.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014596--47014626	16	1.9	16	93	0	53	67	0	0	32	0.91
47014636--47014669	16	2.1	16	94	0	59	52	0	8	38	1.33
47014659--47014705	19	2.4	20	82	13	62	61	4	2	31	1.27
47028106--47028165	24	2.4	25	80	2	77	20	28	20	31	1.97
47028148--47028248	25	4.0	26	73	5	66	21	25	18	33	1.97
47032189--47032378	50	3.7	50	82	4	191	25	22	28	22	1.99
47039204--47039415	40	5.4	39	79	6	194	19	31	17	31	1.95
47039200--47039400	39	5.1	39	80	4	206	19	30	17	31	1.95
47041134--47041172	17	2.3	17	86	8	53	30	5	0	64	1.15
47042307--47042467	81	2.0	83	85	2	218	40	10	7	40	1.68
47043095--47043139	22	2.0	22	82	0	54	31	8	24	35	1.86
47043124--47043177	23	2.3	23	93	0	90	22	1	22	53	1.55
47047244--47047288	22	2.0	22	91	0	72	28	6	28	35	1.83
47047421--47047483	6	10.5	6	100	0	126	49	15	0	34	1.45
47047483--47047545	32	2.0	32	96	0	117	38	9	17	34	1.82
47052133--47052197	32	2.0	32	96	0	121	38	12	16	32	1.86
47057609--47057642	17	2.0	17	100	0	68	17	29	41	11	1.85
47060629--47060663	18	2.0	17	88	5	52	45	0	0	54	0.99
47060617--47060932	156	2.0	157	95	0	571	48	4	2	44	1.37
47060967--47061071	44	2.5	40	76	15	113	31	29	4	34	1.78
47060965--47061074	45	2.6	44	81	8	131	31	29	5	33	1.80
47061053--47061122	16	4.4	16	96	0	104	32	35	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47067054--47067115	31	2.0	30	84	3	79	58	8	6	27	1.52
47069043--47069068	6	4.3	6	100	0	52	15	0	0	84	0.62
47082764--47082788	13	1.9	13	100	0	50	68	16	0	16	1.22
47083497--47083601	41	2.6	41	90	0	165	24	21	23	29	1.99
47092955--47092991	10	3.6	10	88	3	56	29	0	2	67	1.04
47094247--47094284	19	2.0	19	89	0	58	21	0	15	63	1.31
47096478--47097363	443	2.0	443	96	0	1646	27	20	25	26	1.99
47097715--47097901	74	2.6	75	89	5	287	52	13	5	28	1.62
47100153--47100407	104	2.5	102	84	3	327	55	13	1	29	1.46
47100329--47100376	22	2.2	22	82	14	55	62	8	0	29	1.24
47100312--47100494	87	2.1	89	86	3	253	55	13	0	30	1.43
47100464--47100642	92	1.9	95	86	3	256	56	16	1	25	1.47
47101146--47101182	19	1.9	20	94	5	67	54	0	0	45	1.00
47104219--47104554	167	2.0	167	100	0	672	28	15	17	38	1.90
47111509--47111614	51	2.1	51	96	0	194	40	9	31	18	1.83
47120245--47120282	15	2.6	15	83	4	51	71	2	7	18	1.23
47121673--47121753	38	2.1	38	83	0	99	37	23	16	23	1.94
47124745--47124788	23	1.9	22	82	17	54	36	25	0	38	1.56
47124929--47125068	51	2.7	51	81	4	183	33	25	16	25	1.96
47126336--47126381	21	2.2	21	88	0	65	30	39	2	28	1.69
47140693--47140728	13	2.8	13	100	0	72	33	25	8	33	1.86
47141128--47141157	16	1.9	15	93	6	51	13	0	6	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47141123--47141208	22	3.6	22	76	21	68	20	5	4	68	1.29
47143389--47143497	49	2.2	49	90	3	166	27	30	20	22	1.98
47146769--47146810	13	3.1	14	83	10	52	76	0	7	16	1.00
47147608--47148141	147	3.6	146	87	6	698	43	10	3	42	1.57
47148470--47148509	3	13.0	3	86	5	53	60	2	0	37	1.11
47152173--47152213	20	2.0	20	85	0	55	68	2	9	19	1.29
47160088--47160120	8	4.1	8	100	0	66	24	0	0	75	0.80
47168028--47168053	13	2.0	13	100	0	52	46	0	0	53	1.00
47168374--47168417	21	2.1	21	87	8	63	63	6	2	27	1.31
47168382--47168436	21	2.5	22	80	14	60	60	7	0	32	1.24
47169897--47169944	15	3.3	15	79	5	62	60	2	0	37	1.09
47170272--47170305	14	2.4	14	100	0	68	41	0	5	52	1.25
47173983--47174113	45	2.9	45	79	2	147	40	12	20	26	1.88
47174204--47174293	27	3.3	27	77	0	99	43	15	18	22	1.88
47188686--47188739	24	2.3	23	82	17	67	62	1	1	33	1.16
47205871--47205920	24	2.1	24	96	0	91	30	48	2	20	1.61
47210856--47210958	51	2.0	51	94	0	179	32	20	11	35	1.89
47211573--47211621	15	3.4	14	80	8	53	20	4	2	73	1.10
47217237--47217366	41	3.1	41	71	14	129	31	20	18	30	1.96
47217237--47217410	85	2.0	85	84	4	226	31	20	17	31	1.96
47217477--47217683	44	4.8	42	72	10	159	28	19	18	34	1.95
47217304--47217699	142	3.0	132	83	9	543	28	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47230121--47230154	13	2.8	12	91	8	52	20	0	0	79	0.73
47243303--47243339	19	1.9	19	94	0	65	0	43	10	45	1.39
47243361--47243422	15	4.1	15	78	15	65	0	24	8	67	1.17
47243384--47243417	13	2.7	13	95	4	61	0	29	8	61	1.26
47243379--47243448	30	2.3	30	85	7	88	4	30	11	54	1.55
47245710--47245757	18	2.8	18	74	22	50	43	0	0	56	0.99
47245727--47245778	15	3.6	15	80	12	56	44	0	1	53	1.11
47245775--47245969	56	3.1	65	66	22	191	42	2	6	49	1.40
47245693--47246013	119	2.7	120	97	1	610	43	1	4	50	1.32
47245846--47245901	15	3.8	15	79	13	55	46	0	1	51	1.11
47245975--47246016	15	2.7	16	82	14	52	45	0	2	52	1.13
47245966--47246007	15	2.9	15	82	10	52	47	0	0	52	1.00
47246233--47246284	16	3.2	16	94	0	95	36	36	0	26	1.57
47250057--47250093	17	2.1	19	90	10	60	78	0	21	0	0.75
47252857--47252911	25	2.3	23	77	17	60	56	5	1	36	1.33
47253329--47253373	22	2.0	22	83	12	56	33	6	8	51	1.59
47254242--47254266	8	3.1	8	100	0	50	12	52	12	24	1.72
47254752--47254789	11	3.2	12	92	7	60	0	52	0	47	1.00
47255255--47255325	3	23.3	3	74	8	63	30	1	5	61	1.27
47255267--47255328	23	2.8	22	87	4	81	32	1	8	58	1.37
47255262--47255336	23	3.2	23	80	10	64	32	2	9	56	1.45
47255355--47255402	24	2.0	24	84	12	62	29	4	0	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47266874--47268021	44	25.7	44	72	13	523	31	19	22	27	1.98
47266874--47267789	90	10.3	88	71	12	482	30	19	22	27	1.98
47267045--47267421	177	2.1	178	89	3	564	29	19	23	27	1.98
47267088--47268061	232	4.3	221	88	3	1149	31	18	22	27	1.97
47267715--47268103	188	2.1	187	88	4	581	32	18	20	27	1.96
47267903--47268070	44	3.8	44	77	7	119	32	16	21	29	1.95
47269040--47269077	11	3.2	12	92	7	60	0	52	0	47	1.00
47269543--47269616	3	24.3	3	75	8	69	31	1	5	62	1.26
47269561--47269627	23	3.0	23	80	8	59	31	2	8	56	1.45
47269644--47269691	24	2.0	24	84	12	62	29	4	0	66	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221