genome.fa.s26.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  176  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52484139--52484259	62	1.9	63	86	8	176	25	29	20	23	1.99
52489479--52489505	6	4.5	6	100	0	54	18	0	18	62	1.32
52494664--52494694	13	2.4	13	100	0	62	32	6	16	45	1.72
52494714--52494768	24	2.3	24	96	0	101	30	10	20	38	1.87
52495088--52495112	10	2.5	10	100	0	50	8	0	12	80	0.92
52495587--52495626	16	2.7	15	88	11	64	40	0	0	60	0.97
52503919--52504094	39	4.5	39	85	4	230	42	22	6	28	1.78
52521256--52521293	20	1.9	20	89	10	60	34	5	0	60	1.19
52523846--52524015	45	3.9	44	75	11	156	24	18	28	28	1.98
52527235--52527265	12	2.5	12	94	5	53	54	0	9	35	1.33
52528550--52528584	3	11.7	3	87	0	52	31	5	0	62	1.18
52528909--52528955	19	2.5	19	86	6	60	25	19	10	44	1.82
52530201--52530237	17	2.1	18	90	5	58	29	24	0	45	1.53
52530931--52531003	9	8.3	9	82	15	75	80	8	0	10	0.89
52530958--52530998	12	3.4	12	83	9	57	87	4	0	7	0.65
52531016--52531063	6	8.3	6	90	4	73	83	0	16	0	0.65
52531902--52531942	17	2.3	18	91	8	66	75	0	12	12	1.05
52533211--52533745	44	12.2	44	67	13	197	25	23	25	25	2.00
52533153--52533701	88	6.2	88	91	1	877	26	24	24	24	2.00
52533153--52533819	176	3.8	172	79	10	620	26	24	24	24	2.00
52533831--52534013	50	3.8	45	77	10	177	32	20	20	26	1.97
52533841--52534034	100	2.0	95	83	7	237	30	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52548258--52548367	54	2.0	54	96	0	202	46	26	8	19	1.77
52550285--52550329	22	2.0	22	82	0	54	26	28	15	28	1.96
52550886--52551231	42	8.1	43	87	3	448	24	27	18	29	1.98
52550893--52551248	43	8.3	42	87	3	462	25	27	18	28	1.98
52550893--52551248	85	4.2	85	88	2	491	25	27	18	28	1.98
52555769--52555815	18	2.7	17	81	12	51	48	8	23	19	1.75
52555779--52555814	18	1.9	18	88	5	54	47	5	25	22	1.73
52563185--52563277	47	2.0	47	89	0	141	39	21	20	18	1.92
52569010--52569435	114	3.7	114	78	4	466	30	19	23	26	1.98
52569226--52569623	188	2.1	188	93	0	679	31	18	23	26	1.97
52569408--52569758	113	3.1	112	79	8	413	31	19	23	26	1.98
52569780--52569829	17	3.0	17	94	2	84	34	0	16	50	1.45
52569870--52569945	7	10.9	7	74	5	64	17	1	35	46	1.56
52572509--52572890	26	15.2	26	87	6	531	46	20	0	32	1.56
52572509--52572625	18	6.2	18	65	27	64	44	18	1	35	1.60
52572662--52572792	19	7.5	19	62	26	65	48	20	0	30	1.55
52572609--52572890	77	3.7	76	95	1	492	47	20	0	31	1.54
52572882--52572935	9	5.7	10	79	20	55	42	20	0	37	1.52
52572856--52572921	18	3.6	18	84	10	89	46	18	0	34	1.49
52572771--52572935	18	9.5	18	66	30	69	45	20	0	33	1.52
52578386--52578455	21	3.3	21	79	0	77	34	18	44	2	1.65
52578680--52578713	14	2.4	14	95	0	59	17	8	20	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52578780--52579111	42	7.9	42	87	1	198	28	21	20	30	1.98
52578782--52579107	126	2.6	125	86	1	357	27	21	20	29	1.98
52578869--52579155	42	6.8	42	91	2	443	23	22	21	32	1.98
52578782--52579155	84	4.5	82	85	4	442	27	21	20	31	1.98
52583558--52583677	42	2.8	42	81	2	134	28	15	23	32	1.95
52584219--52584353	48	2.8	48	85	1	189	23	14	16	45	1.83
52584223--52584372	48	3.1	48	82	2	185	24	16	16	43	1.87
52588474--52588519	18	2.8	18	78	18	55	2	30	39	28	1.69
52591892--52591968	38	2.0	38	82	5	93	53	5	32	9	1.55
52595280--52595323	22	1.9	24	90	9	74	40	13	0	45	1.44
52608921--52609501	44	13.2	44	68	13	259	29	20	18	31	1.96
52608921--52609508	175	3.4	175	92	0	969	29	20	18	31	1.96
52617609--52617652	19	2.3	19	84	7	54	40	11	22	25	1.87
52628171--52628258	46	1.9	46	100	0	176	29	18	12	39	1.87
52629424--52629506	20	4.3	19	73	16	64	59	0	0	40	0.98
52629465--52629506	20	2.0	21	95	4	77	57	0	0	42	0.99
52630287--52630320	17	2.0	17	94	0	59	44	50	0	5	1.26
52634925--52634958	17	2.0	17	94	0	59	44	50	0	5	1.26
52641115--52641211	38	2.6	38	83	3	115	42	30	13	13	1.83
52641179--52641233	22	2.5	22	93	0	92	43	32	12	10	1.78
52641140--52641256	60	2.0	60	89	3	182	42	30	12	13	1.82
52641471--52641513	17	2.5	17	76	0	50	41	11	2	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52645648--52645685	20	1.9	20	89	10	60	63	7	0	28	1.23
52645653--52645694	19	2.2	19	83	8	50	69	7	2	21	1.25
52646231--52646276	18	2.6	18	82	0	56	50	0	2	47	1.13
52656692--52656717	12	2.2	12	100	0	52	23	23	7	46	1.78
52656876--52656934	27	2.2	27	77	11	68	38	25	15	20	1.91
52657011--52657065	24	2.3	24	83	0	65	32	25	27	14	1.95
52664141--52664166	12	2.2	12	100	0	52	23	23	7	46	1.78
52666513--52666544	12	2.5	13	90	10	57	50	0	0	50	1.00
52666607--52666646	3	13.3	3	94	0	71	0	30	0	70	0.88
52666708--52666740	13	2.5	13	100	0	66	24	9	18	48	1.76
52668449--52668538	37	2.4	37	87	3	128	40	14	14	31	1.86
52685107--52685145	6	6.5	6	87	0	60	15	0	5	79	0.90
52686631--52686671	13	3.3	13	81	18	52	34	0	14	51	1.43
52686938--52686995	30	1.9	30	89	0	89	20	41	27	10	1.85
52697204--52697261	22	2.7	21	82	10	80	44	18	3	32	1.67
52707664--52708042	189	2.0	186	95	1	686	30	11	21	37	1.88
52715660--52715715	25	2.2	26	81	9	62	64	0	3	32	1.11
52717894--52717951	30	1.9	30	100	0	116	29	22	13	34	1.93
52733610--52733645	16	2.2	16	95	0	63	27	0	33	38	1.57
52733881--52733915	18	2.0	17	88	5	52	54	0	0	45	0.99
52733768--52734083	156	2.0	157	95	0	562	43	3	5	48	1.42
52734017--52734058	15	2.7	16	82	14	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52734026--52734067	15	2.9	15	82	10	52	52	0	0	47	1.00
52734052--52734239	61	3.1	60	67	19	174	48	6	2	42	1.42
52734015--52734305	120	2.4	121	93	4	491	49	5	3	42	1.40
52734136--52734187	15	3.6	15	80	12	56	53	1	0	44	1.11
52734255--52734379	47	2.8	45	74	11	112	49	1	3	45	1.27
52734020--52734341	120	2.7	118	87	10	417	49	4	3	42	1.40
52734343--52734390	26	1.9	25	84	16	64	52	2	0	45	1.12
52734255--52734526	92	3.0	90	79	12	279	47	3	3	45	1.36
52744521--52744559	12	3.1	12	79	13	51	46	2	0	51	1.14
52747294--52747458	21	7.9	21	79	6	156	47	13	19	19	1.83
52747294--52747460	42	4.0	42	78	6	185	46	14	19	19	1.83
52749630--52749663	15	2.2	15	89	5	50	64	8	8	17	1.47
52754341--52754433	25	3.6	25	73	13	82	35	22	21	20	1.96
52754376--52754433	25	2.3	25	87	0	89	37	20	24	17	1.93
52757640--52757669	10	3.0	10	95	0	51	86	0	10	3	0.67
52761514--52761555	12	3.5	12	75	12	50	64	2	9	23	1.35
52761508--52761559	24	2.2	24	100	0	104	61	5	7	25	1.45
52763184--52763229	23	2.0	23	87	4	67	63	2	0	34	1.07
52767540--52767581	17	2.5	18	85	11	54	23	2	11	61	1.42
52768128--52768325	97	2.1	94	92	2	324	32	38	5	23	1.78
52769630--52769660	2	15.5	2	100	0	62	0	48	0	51	1.00
52772022--52772051	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52780519--52780618	42	2.4	42	91	0	155	36	12	27	25	1.91
52783227--52783559	47	7.1	47	93	0	531	28	31	9	31	1.88
52790732--52790907	88	2.0	88	97	0	334	39	11	16	32	1.85
52791960--52792109	51	3.1	50	83	13	197	32	15	23	28	1.95
52792015--52792111	43	2.2	44	87	1	142	35	15	20	28	1.93
52792080--52792142	31	2.0	31	90	0	99	38	19	15	26	1.92
52795231--52795282	27	1.9	27	84	7	70	40	17	23	19	1.91
52795818--52795905	29	3.0	28	76	3	86	21	22	13	42	1.88
52796870--52796915	3	15.3	3	100	0	92	67	0	0	32	0.91
52799132--52799169	15	2.4	17	91	8	62	44	2	0	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221