genome.fa.s26.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  150  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45534124--45534328	113	1.8	113	88	2	313	27	20	22	29	1.98
45534406--45534452	16	2.8	16	93	6	76	27	0	8	63	1.23
45534629--45534882	7	35.7	7	68	12	54	23	1	33	41	1.62
45534722--45534882	21	7.6	21	73	6	92	21	0	37	39	1.58
45534702--45534844	14	10.1	14	74	8	76	22	1	34	41	1.62
45534826--45534882	23	2.6	22	83	5	71	17	0	40	42	1.49
45535928--45535977	6	8.2	6	93	2	82	0	62	0	38	0.96
45536037--45536086	25	2.0	25	92	0	82	4	36	4	56	1.37
45538908--45538957	21	2.4	21	93	0	82	30	30	8	32	1.86
45542696--45542836	72	1.9	73	91	1	230	28	8	20	42	1.81
45542824--45542921	43	2.3	42	85	5	126	22	19	30	27	1.98
45547268--45547296	3	9.7	3	100	0	58	31	0	0	68	0.89
45547297--45547482	73	2.5	73	97	0	345	27	6	25	40	1.80
45551717--45551902	73	2.5	73	98	0	354	28	6	24	40	1.80
45566413--45566486	29	2.5	29	86	4	94	21	12	16	50	1.77
45568460--45568497	19	2.0	19	94	0	67	26	34	10	28	1.90
45573554--45573751	50	3.8	50	89	4	279	22	31	22	23	1.98
45580891--45581092	100	2.0	100	100	0	404	29	19	25	25	1.99
45582764--45582968	102	2.0	102	99	0	401	43	17	18	20	1.88
45590169--45590416	50	4.8	51	79	5	234	28	20	27	23	1.99
45590174--45590416	100	2.4	103	80	5	269	27	20	27	23	1.99
45590188--45590465	150	1.8	153	80	6	341	28	20	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45593080--45593126	24	2.0	22	84	8	58	21	29	14	34	1.93
45595956--45595994	20	2.0	20	94	0	69	10	30	17	41	1.83
45600201--45600244	6	7.3	6	94	0	61	43	0	34	22	1.54
45601602--45601632	3	10.3	3	92	0	53	3	32	0	64	1.09
45602300--45602363	30	2.2	29	86	8	85	26	14	14	45	1.82
45603179--45603268	41	2.2	41	82	9	105	15	32	26	25	1.96
45614279--45614331	27	1.9	27	84	3	70	64	1	0	33	1.05
45628411--45628444	16	2.2	15	94	5	59	52	0	0	47	1.00
45644088--45644290	46	4.3	46	87	7	280	36	14	21	28	1.92
45644022--45644273	98	2.6	98	94	0	450	34	15	21	28	1.94
45644254--45644436	37	5.0	37	95	1	325	38	16	20	24	1.93
45645903--45645976	17	4.5	17	71	21	68	54	0	4	41	1.19
45645911--45645993	12	7.4	11	70	25	50	54	1	2	42	1.21
45645872--45645993	48	2.5	48	86	2	156	52	1	3	42	1.27
45649672--45649713	19	2.1	21	91	8	70	40	9	0	50	1.35
45654283--45654353	29	2.5	27	78	14	81	53	1	4	40	1.29
45655054--45655124	26	2.7	27	80	10	76	61	22	1	14	1.40
45655243--45655331	7	12.9	7	73	11	67	42	29	2	25	1.67
45655248--45655306	13	4.4	13	80	4	55	44	32	1	22	1.63
45664907--45665008	37	2.8	37	95	0	177	26	30	18	24	1.98
45665127--45665533	47	8.6	47	92	2	643	28	29	8	33	1.86
45665127--45665533	96	4.3	95	92	0	647	28	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45669090--45669435	40	8.6	40	94	0	566	26	29	21	22	1.99
45670702--45670803	37	2.8	37	95	0	177	26	30	18	24	1.98
45670921--45671423	47	10.6	47	92	3	792	28	29	8	33	1.86
45670921--45671423	96	5.3	96	93	0	818	28	29	8	33	1.86
45670921--45671423	143	3.5	141	91	3	792	28	29	8	33	1.86
45674442--45674478	18	2.1	18	89	0	56	40	18	13	27	1.88
45674447--45674485	18	2.2	18	85	0	51	46	23	10	20	1.81
45675038--45675084	23	2.0	25	87	8	71	27	6	6	59	1.46
45685028--45685067	12	3.2	13	82	13	57	70	0	17	12	1.18
45685219--45685273	28	2.0	27	89	6	85	60	9	9	21	1.55
45687891--45687962	32	2.2	32	95	0	126	34	15	12	37	1.85
45690121--45690158	19	2.0	19	85	10	51	42	0	15	42	1.47
45690502--45690564	18	3.6	18	82	6	67	73	3	11	12	1.22
45690511--45690568	18	3.2	18	82	2	71	74	3	12	10	1.19
45691521--45691561	20	2.0	20	85	4	55	17	19	26	36	1.94
45693481--45693581	41	2.5	41	85	1	141	33	15	31	18	1.93
45693477--45693569	20	4.6	20	69	7	62	35	16	31	17	1.92
45698647--45698706	30	2.0	30	100	0	120	50	13	13	23	1.77
45698651--45698715	30	2.2	30	91	5	105	52	13	12	21	1.73
45701300--45701331	17	1.9	17	93	6	57	15	9	0	75	1.05
45704715--45705116	120	3.4	120	92	0	644	43	1	5	49	1.36
45705066--45705100	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45705257--45705353	45	2.2	45	85	5	126	32	28	5	32	1.79
45705333--45705381	16	3.1	16	90	0	71	24	34	4	36	1.75
45705339--45705402	16	4.0	16	91	0	74	29	35	1	32	1.67
45726019--45726069	17	3.0	17	82	0	66	33	9	19	37	1.85
45728049--45728108	24	2.5	24	81	8	59	18	23	6	51	1.69
45728235--45728441	36	5.6	36	69	7	135	33	22	20	24	1.97
45728223--45728441	75	2.9	75	86	1	285	31	22	21	24	1.98
45729845--45729880	18	2.1	18	89	5	56	55	5	0	38	1.23
45732124--45732162	19	2.1	19	85	9	53	35	7	12	43	1.72
45739208--45739249	11	3.8	11	81	12	50	76	16	4	2	1.07
45740801--45740867	34	2.0	34	100	0	134	29	14	11	43	1.82
45748414--45748494	13	5.7	14	69	17	60	18	1	32	48	1.56
45748520--45748561	20	2.1	20	90	0	66	14	0	28	57	1.38
45748503--45748631	69	1.9	69	80	3	152	15	1	28	54	1.51
45748600--45748660	27	2.3	27	91	0	95	16	1	34	47	1.56
45748758--45748813	7	7.9	7	80	11	60	17	0	26	55	1.43
45748758--45748825	21	3.2	21	77	8	66	16	0	29	54	1.42
45748860--45748905	14	3.2	15	78	9	51	13	2	30	54	1.50
45748900--45748939	20	2.0	20	90	0	62	17	0	27	55	1.43
45749007--45749056	20	2.5	20	90	0	73	18	0	30	52	1.46
45749027--45749083	27	2.1	27	83	0	69	17	0	33	49	1.47
45752833--45752857	13	1.9	13	100	0	50	56	8	16	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45753490--45753520	15	2.1	15	93	0	53	32	6	12	48	1.67
45755097--45755122	12	2.2	12	100	0	52	23	7	15	53	1.67
45756532--45756739	91	2.3	91	94	0	353	45	2	3	47	1.35
45756564--45756707	47	3.1	47	69	16	156	43	2	3	50	1.33
45756606--45756771	47	3.6	46	71	15	137	44	3	3	48	1.35
45756756--45756790	18	2.0	18	88	5	54	45	5	0	48	1.26
45756755--45757051	119	2.5	121	92	2	501	43	3	4	49	1.39
45757008--45757049	15	2.7	16	82	14	52	45	0	2	52	1.13
45756999--45757040	15	2.9	15	82	10	52	47	0	0	52	1.00
45757176--45757283	45	2.5	44	81	8	127	31	28	5	34	1.80
45763489--45763680	95	2.0	95	94	0	339	29	9	19	41	1.82
45769340--45769382	21	2.0	21	81	0	50	51	16	0	32	1.45
45778827--45778914	34	2.6	34	81	3	88	30	9	21	38	1.85
45787743--45788085	76	4.5	76	78	1	303	24	23	20	31	1.98
45788916--45788962	23	2.0	23	87	0	67	74	10	8	6	1.22
45793638--45793672	13	2.7	13	90	0	52	25	0	0	74	0.82
45793664--45793692	11	2.6	11	100	0	58	48	0	0	51	1.00
45793678--45793733	27	2.0	28	89	3	87	30	0	1	67	1.01
45795526--45795583	10	5.6	10	76	13	55	82	12	1	3	0.86
45795536--45795583	16	2.9	17	81	9	64	83	12	2	2	0.83
45795526--45795598	26	2.8	24	82	10	74	82	9	5	2	0.93
45797917--45798174	44	5.6	44	71	16	175	32	18	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45798088--45798185	44	2.2	44	85	0	115	31	20	23	24	1.98
45798223--45798786	50	11.3	50	71	4	314	33	23	19	22	1.97
45798323--45798812	100	4.9	100	87	2	635	32	24	20	23	1.98
45798323--45799003	200	3.5	198	80	8	754	32	23	20	23	1.98
45798740--45798892	80	1.9	80	90	0	243	26	28	21	23	1.99
45798853--45799003	50	3.0	50	69	0	140	32	21	19	26	1.97
45798641--45798992	180	2.0	180	87	0	506	29	24	20	25	1.99
45804474--45804507	17	2.0	17	88	0	50	64	0	11	23	1.26
45804588--45804639	3	17.3	3	91	0	59	67	9	0	23	1.20
45804588--45804639	15	3.5	15	89	0	77	67	9	0	23	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221