genome.fa.s26.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  124  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38219648--38219692	7	6.4	7	100	0	90	55	15	0	28	1.41
38222356--38222418	21	2.8	22	78	7	56	47	3	1	47	1.27
38228868--38229005	57	2.4	57	80	9	145	44	1	2	51	1.25
38229715--38229769	15	3.8	15	73	21	55	36	0	0	63	0.95
38230776--38230824	7	6.7	7	82	17	64	18	0	0	81	0.69
38230767--38230837	30	2.4	29	88	6	108	26	0	0	73	0.84
38231680--38231727	25	2.0	23	84	8	60	58	4	14	22	1.54
38231918--38232167	132	1.9	132	88	3	378	37	10	26	26	1.88
38232465--38232497	13	2.6	13	85	4	50	48	0	6	45	1.27
38236495--38236544	19	2.6	19	83	0	55	6	8	12	74	1.22
38236504--38236573	31	2.3	31	87	2	97	8	8	11	71	1.31
38237547--38237590	18	2.5	17	82	10	61	34	6	2	56	1.38
38237543--38237591	19	2.6	20	84	12	68	34	6	2	57	1.35
38237840--38237903	29	2.2	29	88	0	92	39	1	28	31	1.66
38237941--38237975	18	1.9	18	88	0	52	28	2	11	57	1.48
38242657--38242702	19	2.4	19	78	10	58	78	6	2	13	1.04
38243210--38243270	29	2.0	29	87	6	86	39	3	26	31	1.72
38243316--38243354	18	2.2	18	100	0	78	28	5	10	56	1.54
38249327--38249365	18	2.2	17	86	13	53	33	0	20	46	1.51
38249591--38249712	23	5.3	23	85	2	174	22	22	26	29	1.99
38249591--38249712	46	2.7	46	90	2	192	22	22	26	29	1.99
38254169--38254197	3	9.7	3	100	0	58	0	31	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38259595--38259716	23	5.3	23	73	7	113	26	18	22	32	1.97
38259595--38259716	46	2.7	46	88	0	181	26	18	22	32	1.97
38276517--38276564	22	2.1	22	84	3	60	54	2	8	35	1.42
38281034--38281173	69	2.0	69	88	2	210	23	15	22	37	1.93
38285782--38285967	93	2.0	94	96	1	347	41	2	17	38	1.61
38286459--38286518	30	2.0	30	100	0	120	23	20	30	26	1.98
38288021--38288051	15	2.1	15	93	0	53	48	16	6	29	1.70
38294369--38294412	22	2.0	22	91	4	72	40	13	4	40	1.65
38294999--38295025	13	2.1	13	100	0	54	40	22	7	29	1.81
38296817--38296846	3	10.0	3	100	0	60	0	33	0	66	0.92
38306349--38306400	26	2.0	26	96	0	95	46	9	26	17	1.79
38308339--38308404	31	2.2	30	78	10	71	37	12	9	40	1.74
38308346--38308404	31	1.9	31	86	6	84	37	11	10	40	1.76
38311578--38311611	18	1.9	18	88	5	52	55	0	2	41	1.15
38313591--38313707	38	3.1	38	81	3	119	37	19	10	32	1.86
38314105--38314152	20	2.3	21	85	3	62	83	0	12	4	0.79
38314115--38314139	9	2.8	9	100	0	50	92	0	8	0	0.40
38314567--38314616	19	2.5	21	87	9	70	40	4	0	56	1.18
38316978--38317014	9	4.1	9	92	0	65	45	13	10	29	1.77
38317063--38317123	30	2.0	31	87	3	88	19	45	0	34	1.51
38318040--38318065	5	5.2	5	100	0	52	19	19	19	42	1.90
38319758--38319782	7	3.6	7	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38325355--38325601	50	4.8	51	80	6	225	23	27	20	28	1.99
38331166--38331270	53	2.0	53	96	0	192	41	15	5	37	1.71
38331183--38331295	53	2.1	53	83	3	138	42	15	6	35	1.73
38333192--38333248	30	1.9	30	85	7	80	33	14	21	31	1.92
38333475--38333659	51	3.6	51	80	5	207	23	17	28	30	1.97
38339906--38340024	51	2.4	51	87	7	163	45	6	17	30	1.74
38339906--38340075	57	3.2	51	78	13	153	45	7	17	30	1.75
38339953--38340123	59	2.9	59	81	6	206	45	7	18	28	1.76
38341543--38341913	183	2.0	183	98	0	715	32	8	22	36	1.83
38350734--38350940	105	2.0	105	98	0	396	19	24	21	34	1.96
38354096--38354121	12	2.2	12	100	0	52	69	0	23	7	1.14
38362475--38362520	24	1.9	24	82	8	58	69	10	8	10	1.37
38374067--38374190	48	2.5	50	81	6	146	23	12	33	30	1.91
38374067--38374232	48	3.4	47	77	9	145	22	11	33	32	1.90
38396071--38396373	40	7.6	40	90	2	396	24	20	28	27	1.99
38398729--38398821	27	3.5	27	78	11	111	43	16	21	19	1.88
38398821--38398888	28	2.5	28	85	2	93	44	20	20	14	1.87
38399243--38399324	27	3.0	28	85	3	112	20	21	21	35	1.96
38404055--38404136	35	2.3	35	89	2	128	43	32	9	13	1.77
38405696--38405739	22	1.9	22	86	9	61	38	15	2	43	1.60
38413389--38413432	22	1.9	22	86	9	61	38	13	2	45	1.56
38413916--38413944	14	2.0	15	93	6	51	13	6	3	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38420020--38420066	25	1.9	24	87	12	69	34	8	0	57	1.29
38426468--38426698	27	8.4	27	83	8	254	42	19	20	17	1.89
38426468--38426698	54	4.2	54	84	5	295	42	19	20	17	1.89
38427017--38427105	28	3.2	28	82	6	110	25	24	20	29	1.99
38439448--38439502	21	2.7	20	77	8	65	38	3	3	54	1.36
38443000--38443028	13	2.3	13	94	5	51	27	10	0	62	1.28
38444454--38444490	9	4.1	9	92	0	65	45	13	10	29	1.77
38444704--38444763	30	2.0	31	83	3	77	20	38	1	40	1.62
38444838--38444898	19	3.4	19	76	15	58	22	31	0	45	1.53
38445801--38445868	22	3.0	22	80	6	57	69	5	4	20	1.28
38450703--38450755	23	2.2	24	96	3	99	41	24	3	30	1.72
38459783--38459835	22	2.3	24	84	9	67	50	7	1	39	1.41
38460989--38461295	150	2.0	150	95	0	551	40	6	35	17	1.75
38461300--38461416	36	3.2	36	85	0	153	30	8	30	29	1.87
38463872--38463936	33	2.0	33	100	0	130	9	26	18	46	1.79
38463873--38463927	17	3.3	17	69	5	58	9	25	20	45	1.80
38469062--38469103	18	2.4	17	84	7	57	45	2	14	38	1.58
38471263--38471302	19	2.0	20	85	4	55	70	2	0	27	1.01
38471363--38471405	17	2.5	18	81	7	54	65	0	4	30	1.13
38471362--38471400	18	2.2	18	86	9	53	69	0	5	25	1.09
38471388--38471434	24	2.0	24	91	0	76	51	0	2	46	1.13
38474828--38474868	20	2.0	20	86	9	57	39	2	4	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38475392--38475521	49	2.6	50	84	3	183	32	13	22	31	1.93
38475579--38475625	23	2.0	23	100	0	94	21	17	25	36	1.94
38482865--38482932	32	2.1	32	88	0	100	45	11	13	29	1.79
38484449--38484554	4	26.5	4	94	0	185	22	0	27	50	1.50
38493896--38494167	125	2.2	125	90	4	424	30	14	22	33	1.94
38497302--38498222	29	31.5	29	84	6	1139	32	1	21	43	1.62
38497430--38497474	23	1.9	23	86	13	65	28	4	24	42	1.74
38497302--38498222	179	5.2	175	85	7	1160	32	1	21	43	1.62
38499386--38499417	7	4.6	7	100	0	64	59	12	0	28	1.34
38500375--38500408	15	2.3	15	90	5	52	67	5	0	26	1.13
38500506--38500561	28	2.0	28	89	6	87	57	1	0	41	1.09
38500506--38500563	29	2.0	28	87	9	82	56	1	0	41	1.09
38500597--38500647	22	2.3	21	83	9	66	33	0	33	33	1.58
38500600--38500699	52	1.9	52	91	0	164	38	0	32	30	1.58
38500652--38500707	22	2.5	22	97	2	103	41	0	30	28	1.57
38512289--38512358	21	3.3	21	71	0	68	12	22	18	45	1.83
38512234--38512381	42	3.5	42	78	3	138	16	22	17	43	1.87
38512284--38512386	21	4.9	20	67	7	62	13	23	19	43	1.86
38514671--38514917	50	4.8	50	78	6	185	23	26	21	28	1.99
38525210--38525254	22	2.0	22	100	0	90	44	0	13	42	1.43
38525422--38525493	28	2.6	28	84	8	85	44	0	4	51	1.20
38525523--38525733	54	3.6	56	69	20	146	42	3	3	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38525572--38525770	66	3.2	62	68	19	164	41	4	5	49	1.43
38525534--38525823	120	2.4	120	94	1	492	43	3	3	50	1.36
38525659--38525820	15	10.9	15	67	21	58	43	2	3	50	1.31
38525788--38525829	15	2.7	16	82	14	52	45	0	2	52	1.13
38526206--38526440	50	4.6	50	81	5	215	21	26	22	29	1.99
38528843--38528973	54	2.4	54	82	6	160	22	10	25	41	1.86
38532307--38532373	21	3.2	21	61	23	50	26	19	14	38	1.91
38532297--38532380	42	2.0	42	97	0	159	27	19	15	38	1.91
38532703--38532728	13	2.0	13	100	0	52	23	46	7	23	1.78
38536640--38536692	18	2.9	18	76	15	56	9	18	1	69	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221