genome.fa.s26.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  15  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562435--4562495	20	3.1	20	81	9	72	36	0	14	49	1.44
4562453--4562667	25	9.3	25	68	17	142	35	0	16	46	1.53
4562454--4562664	93	2.3	89	86	4	287	36	0	16	46	1.53
4562386--4562650	113	2.3	115	85	4	333	34	2	17	45	1.61
4562595--4562664	21	3.1	21	73	15	77	34	0	12	52	1.40
4562627--4562714	25	3.5	25	76	6	72	30	3	19	46	1.66
4562746--4562817	30	2.4	31	80	15	96	52	0	4	43	1.20
4562800--4562844	23	2.0	22	86	4	63	46	0	6	46	1.29
4562793--4562853	30	2.0	30	84	6	79	47	0	6	45	1.28
4564519--4564568	22	2.3	22	100	0	100	44	18	16	22	1.87
4565276--4565406	65	2.0	64	92	1	217	32	11	9	46	1.73
4565490--4565759	137	2.0	137	88	2	409	26	15	13	44	1.83
4566546--4567103	115	4.9	114	82	4	633	27	25	21	25	1.99
4566546--4567103	228	2.4	227	83	5	692	27	25	21	25	1.99
4567805--4567844	20	2.0	20	90	0	62	55	7	5	32	1.50
4568636--4568673	16	2.4	17	82	13	53	55	0	0	44	0.99
4568632--4568683	15	3.6	15	80	12	56	53	0	0	46	1.00
4568623--4568822	59	3.3	59	67	18	160	52	2	2	43	1.28
4568790--4568956	47	3.6	46	71	12	146	47	4	2	45	1.35
4568849--4568920	28	2.6	28	84	8	85	51	4	0	44	1.20
4569088--4569132	22	2.0	22	100	0	90	42	13	0	44	1.43
4578468--4578519	4	13.0	4	100	0	104	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4582292--4582319	4	7.0	4	100	0	56	50	25	0	25	1.50
4584252--4584283	16	2.0	16	100	0	64	43	0	25	31	1.55
4586568--4586608	3	13.7	3	94	0	73	31	2	0	65	1.05
4592965--4592997	14	2.4	14	90	5	50	21	3	0	75	0.93
4593542--4593568	6	4.5	6	100	0	54	85	0	0	14	0.61
4606235--4606285	15	3.4	15	68	10	50	49	7	19	23	1.74
4606231--4606287	30	1.9	30	96	0	105	50	7	19	22	1.71
4606270--4606311	21	2.0	21	100	0	84	38	4	23	33	1.76
4606240--4606342	51	2.0	52	92	1	172	41	5	24	28	1.78
4610910--4610966	30	1.9	30	92	0	96	52	7	17	22	1.68
4610914--4610964	15	3.4	15	71	10	50	50	7	17	23	1.72
4610949--4610990	21	2.0	21	95	0	75	40	4	21	33	1.74
4610919--4611021	51	2.0	52	90	1	163	42	5	23	28	1.77
4612448--4612505	24	2.4	24	85	0	80	50	15	12	22	1.77
4623955--4624286	178	1.9	179	87	1	488	37	19	11	31	1.87
4629318--4629343	5	5.2	5	100	0	52	61	19	0	19	1.35
4634770--4634823	18	2.9	18	78	8	56	55	1	1	40	1.21
4646933--4646961	8	3.6	8	100	0	58	10	37	0	51	1.36
4655739--4655769	4	8.0	4	92	7	55	77	0	22	0	0.77
4658489--4658534	24	2.0	24	86	4	67	26	19	10	43	1.84
4662176--4662212	16	2.3	16	90	0	56	51	16	8	24	1.71
4670283--4670335	25	2.2	25	83	9	67	39	5	0	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4671224--4671266	18	2.4	18	80	7	52	51	0	2	46	1.13
4674353--4674391	3	13.0	3	88	0	60	35	35	0	28	1.58
4679504--4679537	17	1.9	17	88	5	50	38	5	8	47	1.59
4680097--4680287	98	1.9	98	94	0	337	38	23	10	27	1.88
4680968--4681017	26	2.0	26	88	4	75	56	4	8	32	1.47
4681752--4681812	29	2.1	29	100	0	122	47	13	3	36	1.59
4681789--4681924	19	6.8	19	80	6	128	37	14	8	39	1.76
4681812--4681924	40	2.9	38	87	5	163	35	15	8	40	1.78
4704518--4704546	8	3.8	8	95	4	51	55	0	0	44	0.99
4715190--4715251	29	2.2	28	91	8	99	62	16	0	20	1.32
4724035--4724141	38	2.8	38	91	2	171	37	1	20	40	1.64
4730586--4730619	7	4.9	7	100	0	68	44	0	0	55	0.99
4736671--4737032	46	8.6	44	88	8	391	29	21	13	36	1.91
4736806--4737032	72	2.9	82	83	14	332	29	20	12	37	1.89
4736852--4736996	36	4.0	36	98	0	272	29	20	12	37	1.89
4740099--4740150	3	17.3	3	80	7	61	59	1	1	36	1.19
4741584--4741849	44	6.0	43	78	5	264	27	22	18	31	1.97
4741571--4741849	88	3.2	88	91	1	434	27	21	18	31	1.97
4748237--4748291	3	18.3	3	81	7	67	60	1	1	36	1.18
4757901--4757958	29	2.0	28	83	3	71	50	1	5	43	1.35
4758195--4758224	3	10.0	3	100	0	60	66	0	0	33	0.92
4759784--4760812	132	7.8	132	92	1	1704	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4760311--4760503	43	4.4	43	64	13	115	27	25	18	27	1.98
4760177--4760813	88	7.2	87	62	15	187	28	24	18	28	1.98
4761942--4761985	7	6.3	7	80	19	56	15	18	0	65	1.27
4764876--4764917	19	2.2	19	83	8	50	40	9	21	28	1.84
4766755--4766811	24	2.4	24	78	16	64	52	1	7	38	1.39
4767030--4767056	3	9.0	3	100	0	54	66	0	0	33	0.92
4771885--4771919	7	5.0	7	100	0	70	42	14	28	14	1.84
4774341--4774419	37	2.1	37	100	0	158	24	37	7	30	1.83
4775191--4775360	84	2.0	84	100	0	340	35	26	10	27	1.89
4778293--4778376	21	3.9	23	78	12	97	36	23	21	17	1.94
4778293--4778376	44	2.0	41	83	6	105	36	23	21	17	1.94
4779355--4779388	16	2.1	16	88	0	50	50	2	0	47	1.16
4779552--4779583	16	2.1	16	94	5	57	40	0	0	59	0.97
4779539--4779591	27	2.1	26	86	10	74	43	0	0	56	0.99
4804386--4804537	79	1.9	79	100	0	304	30	10	21	37	1.87
4808861--4808892	17	2.0	17	88	11	50	25	15	25	34	1.95
4816536--4816605	27	2.5	28	84	6	90	42	8	0	48	1.33
4816682--4816748	27	2.5	27	82	0	80	20	26	34	17	1.96
4817815--4817859	18	2.5	18	81	0	54	28	4	44	22	1.72
4820226--4820264	14	2.7	15	84	8	53	61	5	5	28	1.39
4820238--4820266	14	2.1	14	100	0	58	55	0	6	37	1.27
4821232--4821268	17	2.2	17	100	0	74	45	8	16	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4822575--4822619	19	2.3	19	88	3	63	6	4	4	84	0.87
4822621--4822690	29	2.5	29	90	4	108	50	0	8	41	1.33
4822726--4822766	19	2.2	19	90	0	64	70	4	0	24	1.06
4822726--4822777	19	2.7	19	87	0	59	67	7	0	25	1.17
4823974--4824025	19	2.7	19	87	0	68	25	0	7	67	1.17
4824060--4824126	26	2.5	27	90	7	102	41	8	0	49	1.34
4824128--4824171	18	2.4	18	88	0	70	81	4	6	6	0.97
4825475--4825511	17	2.2	17	100	0	74	29	16	8	45	1.76
4826949--4827141	50	3.8	50	90	0	296	20	30	22	26	1.98
4827479--4827535	30	1.9	30	88	0	87	29	17	5	47	1.70
4828473--4829945	736	2.0	736	97	0	2802	27	25	22	24	2.00
4833435--4833486	27	1.9	27	96	0	95	19	36	26	17	1.94
4833576--4833644	27	2.5	28	90	4	115	46	1	10	42	1.46
4838101--4838389	51	5.7	50	77	3	299	30	14	26	29	1.95
4838103--4838432	102	3.2	102	94	0	561	30	14	25	29	1.95
4838154--4838432	51	5.5	51	75	6	287	31	14	25	29	1.95
4838428--4838535	50	2.2	50	91	0	180	30	13	24	31	1.94
4838308--4838569	137	1.9	137	80	3	303	31	12	24	31	1.93
4840491--4840688	108	1.8	107	83	5	265	36	19	15	29	1.92
4843466--4843922	44	10.4	44	62	20	143	27	25	17	29	1.97
4842910--4844196	132	9.8	132	93	0	2110	28	24	17	30	1.97
4844523--4844580	24	2.4	24	80	5	64	31	22	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4845864--4845898	13	2.8	12	87	12	52	0	0	20	80	0.72
4845863--4845904	18	2.4	17	88	4	57	0	0	21	78	0.75
4849232--4849436	111	1.9	107	83	6	268	35	19	17	28	1.94
4849976--4850005	8	3.8	8	100	0	60	66	0	0	33	0.92
4850234--4850273	21	1.9	21	89	0	62	55	2	5	37	1.35
4851755--4851812	26	2.3	26	82	11	75	44	15	18	20	1.86
4856854--4857117	45	5.9	45	95	0	465	38	15	20	25	1.92
4863182--4863445	45	5.9	45	95	0	465	38	15	20	25	1.92
4864392--4864467	33	2.3	32	82	4	89	50	18	5	26	1.68
4871280--4871309	15	2.0	15	93	0	51	66	16	0	16	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221