genome.fa.s26.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  19  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5492418--5492462	21	2.1	21	84	8	56	28	8	0	62	1.25
5492466--5492511	20	2.4	19	85	3	56	28	0	6	65	1.17
5492387--5492558	9	18.2	9	67	19	75	31	4	2	61	1.29
5492737--5492907	87	1.9	89	84	6	233	32	8	18	41	1.80
5496091--5496136	21	2.2	21	88	0	65	56	2	2	39	1.24
5496860--5496897	16	2.3	17	95	4	69	47	5	0	47	1.24
5499012--5499076	29	2.2	29	80	0	67	53	9	10	26	1.65
5500576--5500613	20	1.9	20	89	10	60	63	2	7	26	1.35
5503403--5503461	26	2.3	26	93	0	100	30	11	15	42	1.83
5504636--5504674	19	2.1	19	100	0	78	30	25	17	25	1.97
5505412--5505521	19	5.9	18	70	19	66	51	2	2	42	1.30
5505410--5505522	37	3.1	37	79	11	117	52	2	2	42	1.29
5510448--5510495	20	2.5	20	80	12	57	18	2	20	58	1.49
5529851--5529881	5	6.2	5	92	0	53	38	3	0	58	1.15
5531609--5531652	17	2.5	19	89	10	67	61	0	0	38	0.96
5540162--5540200	20	2.0	20	84	0	51	38	10	17	33	1.84
5540532--5540557	13	2.0	13	100	0	52	53	15	15	15	1.73
5547044--5547295	125	2.0	123	93	1	423	33	17	13	35	1.88
5550626--5550696	37	1.9	37	97	0	133	49	0	9	40	1.36
5550632--5550700	19	3.7	19	82	5	97	52	0	10	37	1.36
5550776--5550861	27	3.2	27	88	4	113	18	26	24	30	1.98
5550902--5550970	27	2.5	26	81	9	84	44	1	10	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5555305--5555338	4	8.5	4	100	0	68	26	47	0	26	1.53
5559272--5559335	27	2.3	27	81	10	76	50	1	3	45	1.27
5560568--5560603	18	1.9	19	88	5	56	52	2	2	41	1.30
5564661--5564709	15	3.2	16	75	18	50	55	6	4	34	1.44
5566299--5566397	27	3.9	27	69	20	77	34	12	1	52	1.45
5566325--5566403	24	3.2	24	70	16	81	37	13	1	46	1.52
5566321--5566419	49	2.0	49	96	2	180	39	13	1	46	1.49
5566435--5566464	13	2.4	12	94	5	51	36	0	0	63	0.95
5569440--5569472	6	5.8	6	92	7	52	81	0	0	18	0.68
5569440--5569472	16	2.0	17	94	5	59	81	0	0	18	0.68
5570794--5570834	20	2.0	20	100	0	82	39	4	9	46	1.58
5573787--5573823	9	4.1	9	92	0	65	29	10	13	45	1.77
5575762--5577610	921	2.0	921	99	0	3644	41	16	17	24	1.89
5584642--5584690	19	2.8	17	79	14	55	42	0	30	26	1.55
5585054--5585087	9	3.8	9	84	0	50	32	11	11	44	1.77
5592038--5592098	15	4.3	15	77	10	65	36	42	8	13	1.74
5592408--5592449	10	4.1	10	81	12	50	76	9	4	9	1.15
5593194--5593249	3	18.7	3	100	0	112	32	0	0	67	0.91
5593556--5593586	16	1.9	16	93	0	53	29	6	0	64	1.18
5596164--5596267	51	2.0	51	100	0	208	25	15	19	40	1.90
5598288--5598367	18	4.2	19	81	13	94	56	3	1	38	1.25
5598295--5598351	19	2.9	20	84	5	89	50	5	1	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601784--5601818	3	11.7	3	90	0	52	2	0	28	68	1.04
5607371--5607512	59	2.4	60	79	10	150	23	16	13	45	1.83
5607848--5607908	26	2.4	27	75	10	65	55	9	14	19	1.67
5607942--5608101	31	5.3	31	77	8	159	44	10	18	26	1.82
5607873--5608101	61	3.8	59	74	9	187	46	10	17	25	1.80
5607877--5608101	120	1.9	122	83	3	303	45	10	17	26	1.81
5620195--5620240	18	2.6	18	89	3	67	13	8	0	78	0.97
5624692--5624732	21	2.0	21	90	0	64	39	26	9	24	1.86
5629267--5629444	17	10.4	17	72	14	116	47	11	12	27	1.77
5629601--5629684	17	4.7	17	73	8	78	51	14	11	22	1.75
5629628--5629670	19	2.4	19	80	7	54	48	9	9	32	1.67
5642807--5642845	20	2.0	20	94	0	69	38	17	33	10	1.84
5647349--5647438	1	90.0	1	73	0	63	85	10	4	0	0.72
5647347--5647418	26	2.8	25	80	15	85	84	13	1	0	0.68
5647349--5647438	21	4.4	19	81	10	90	85	10	4	0	0.72
5647349--5647432	32	2.7	31	84	10	102	85	10	3	0	0.71
5647349--5647438	15	6.2	14	77	11	83	85	10	4	0	0.72
5647349--5647438	14	6.4	13	80	17	76	85	10	4	0	0.72
5648290--5649622	164	8.4	162	86	7	1657	26	16	20	36	1.94
5648290--5649656	329	4.3	324	85	7	1705	26	16	20	36	1.94
5649035--5649734	75	9.2	74	81	7	511	26	16	21	35	1.94
5649887--5649948	31	2.0	31	90	6	99	29	22	4	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5649894--5650000	29	3.6	30	79	11	87	30	24	4	40	1.75
5650462--5650505	15	3.0	15	83	6	54	59	0	40	0	0.98
5650579--5650636	13	4.2	13	79	18	55	74	0	25	0	0.82
5650588--5650636	19	2.7	19	84	6	57	77	0	22	0	0.77
5651464--5651519	17	3.2	17	75	12	60	33	14	8	42	1.77
5651629--5652052	17	24.6	18	67	17	177	28	13	11	45	1.79
5651589--5651676	43	2.0	43	82	4	106	23	13	14	47	1.80
5651630--5652052	35	12.3	33	68	14	182	28	13	11	45	1.79
5651638--5651767	57	2.4	56	83	6	151	28	13	10	47	1.76
5652005--5652058	16	3.2	16	77	10	54	35	12	11	40	1.79
5652022--5652079	18	3.2	18	80	9	55	43	12	8	36	1.73
5651872--5652076	105	2.0	105	83	9	269	32	12	11	44	1.77
5656668--5656717	21	2.4	22	77	12	61	32	12	20	36	1.89
5656679--5656729	21	2.4	21	83	0	66	27	7	23	41	1.82
5661286--5661338	23	2.4	22	90	6	88	77	0	11	11	1.00
5673652--5673810	30	5.3	31	77	9	159	27	18	10	44	1.82
5673652--5673875	120	1.9	120	83	4	299	26	17	10	45	1.81
5673652--5673882	59	3.9	58	74	6	140	25	17	10	46	1.79
5673844--5673904	26	2.4	27	75	10	65	19	14	9	55	1.67
5692402--5692743	44	7.8	45	71	15	209	32	20	20	26	1.97
5692445--5692821	87	4.4	85	75	14	325	31	20	21	26	1.98
5692405--5692820	170	2.4	164	84	8	419	31	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5693061--5693677	89	7.0	87	69	15	297	32	18	21	28	1.96
5693197--5693579	128	3.0	128	76	10	395	32	19	20	27	1.97
5693156--5693539	43	8.8	44	72	10	222	31	19	21	27	1.97
5693075--5693490	43	9.6	43	72	10	230	30	18	22	28	1.97
5695241--5695277	3	12.3	3	88	0	56	29	2	2	64	1.21
5695292--5695320	13	2.3	13	94	5	51	27	13	0	58	1.36
5695380--5695404	12	2.1	12	100	0	50	40	0	8	52	1.31
5695594--5695634	15	2.5	17	84	7	50	34	0	2	63	1.08
5696901--5696952	24	2.2	24	89	0	77	50	9	3	36	1.54
5699388--5699422	3	11.7	3	100	0	70	31	34	0	34	1.58
5707585--5707637	20	2.8	19	77	8	54	33	7	1	56	1.38
5707590--5707630	20	2.0	21	85	4	57	36	7	0	56	1.27
5709873--5709922	24	2.1	24	100	0	100	24	36	4	36	1.74
5713247--5713585	109	3.1	108	89	3	524	35	16	15	32	1.91
5715484--5715516	11	2.9	11	95	4	57	21	33	0	45	1.52
5715591--5715641	26	1.9	26	84	4	66	60	1	11	25	1.41
5715836--5715864	7	4.3	7	91	8	51	86	0	13	0	0.58
5715836--5715864	13	2.1	14	93	6	51	86	0	13	0	0.58
5716128--5716173	24	2.0	23	91	4	74	6	4	15	73	1.19
5717298--5717368	17	3.5	21	69	25	62	43	5	1	49	1.35
5717989--5718037	19	2.6	19	78	15	57	40	26	8	24	1.83
5719255--5719309	27	2.0	27	82	0	65	56	9	3	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5731185--5731267	30	2.8	30	84	12	93	57	4	2	34	1.33
5731556--5731594	3	13.0	3	83	0	51	61	2	5	30	1.31
5731579--5731636	21	2.8	20	73	17	55	65	6	1	25	1.27
5731910--5731956	23	2.0	24	87	4	69	38	17	6	38	1.75
5732514--5732561	25	2.0	24	84	12	62	47	2	0	50	1.12
5733779--5733808	7	4.3	7	100	0	60	73	0	0	26	0.84
5736738--5736832	27	3.6	25	75	16	84	31	3	3	62	1.27
5738051--5738075	12	2.1	12	100	0	50	76	0	8	16	1.02
5738509--5738537	14	2.1	14	100	0	58	27	6	20	44	1.77
5740157--5740201	21	2.1	21	100	0	90	37	13	40	8	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221