genome.fa.s26.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  109  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33450342--33450605	87	3.0	87	83	0	339	38	10	26	24	1.88
33452358--33452396	20	2.0	20	90	10	62	15	23	5	56	1.59
33452672--33452791	49	2.4	50	77	2	116	23	28	20	28	1.99
33453180--33453238	30	2.0	30	86	0	82	27	25	6	40	1.80
33461677--33461938	129	2.0	130	94	2	456	32	14	17	36	1.89
33475033--33475059	14	1.9	14	100	0	54	37	7	14	40	1.74
33475502--33475552	23	2.2	23	79	6	59	35	19	9	35	1.85
33483054--33483237	96	1.9	96	82	0	233	21	20	25	33	1.97
33496799--33496838	19	2.0	20	85	9	55	35	12	30	22	1.91
33505916--33505950	18	1.9	18	88	0	52	71	8	8	11	1.31
33520587--33520633	20	2.3	20	85	0	67	21	12	36	29	1.91
33521769--33521874	48	2.2	48	85	9	137	14	24	1	59	1.45
33524451--33524497	20	2.3	20	85	0	67	21	12	36	29	1.91
33525633--33525738	48	2.2	48	85	9	137	14	24	1	59	1.45
33528160--33528206	20	2.3	20	85	0	67	21	12	36	29	1.91
33528395--33528429	18	1.9	18	88	0	52	11	8	8	71	1.31
33531142--33531170	13	2.1	14	93	6	51	68	13	6	10	1.37
33531486--33531532	21	2.3	21	85	3	60	29	25	12	31	1.93
33532912--33532989	39	2.0	39	87	5	113	30	37	6	25	1.81
33545145--33545197	23	2.4	22	76	20	56	9	18	1	69	1.25
33548108--33548154	23	2.1	22	88	4	67	82	2	8	6	0.90
33548108--33548145	10	3.7	10	89	3	58	86	2	7	2	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33550969--33551015	20	2.3	20	81	0	58	29	34	12	23	1.92
33554572--33554618	23	2.1	23	84	7	62	51	12	4	31	1.59
33556695--33556783	46	1.9	46	93	4	153	25	19	19	35	1.95
33559317--33559363	11	3.9	12	86	8	51	74	10	2	12	1.16
33559314--33559361	13	3.8	13	83	10	64	72	10	4	12	1.24
33559402--33559446	13	3.5	13	96	3	83	68	0	11	20	1.19
33565046--33565082	12	3.2	11	85	14	56	21	2	8	67	1.29
33565048--33565079	13	2.5	13	95	5	57	12	3	6	78	1.06
33569519--33569582	22	2.9	22	78	0	83	35	6	31	26	1.81
33573411--33573447	14	2.6	14	95	0	65	54	2	0	43	1.14
33578914--33578953	20	2.0	20	85	9	55	77	0	17	5	0.94
33579165--33579203	20	1.9	21	89	5	62	23	28	12	35	1.91
33580729--33580778	20	2.4	21	86	6	66	84	0	4	12	0.76
33580729--33580777	10	4.7	10	82	7	53	83	0	4	12	0.77
33581729--33581820	18	5.3	18	75	11	84	73	2	18	5	1.12
33581783--33581819	13	2.7	14	88	12	51	78	0	13	8	0.96
33581783--33581828	14	3.1	15	87	9	60	76	0	13	10	1.03
33581729--33581820	6	14.8	6	73	6	76	73	2	18	5	1.12
33581838--33581877	18	2.3	18	82	4	55	65	5	20	10	1.42
33581838--33581887	17	2.9	17	77	8	57	62	4	24	10	1.44
33582581--33582767	45	4.2	45	94	0	313	38	15	20	25	1.92
33584553--33584783	45	5.2	45	95	0	401	38	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33590944--33591175	45	5.2	45	94	1	394	38	15	20	25	1.92
33590941--33591175	89	2.6	90	93	0	400	38	15	20	26	1.92
33591545--33591591	20	2.3	20	81	0	58	29	34	14	21	1.93
33594209--33594314	48	2.2	47	85	9	135	59	1	24	14	1.45
33595985--33596031	20	2.3	20	85	0	67	29	36	12	21	1.91
33597743--33597804	10	5.9	10	74	10	52	33	32	3	30	1.74
33597743--33597805	21	3.0	21	88	2	90	33	33	3	30	1.74
33598829--33598862	15	2.3	15	89	0	50	35	29	32	2	1.73
33602599--33602660	10	5.9	10	74	10	52	33	32	3	30	1.74
33602599--33602661	21	3.0	21	88	2	90	33	33	3	30	1.74
33604329--33604367	20	1.9	21	89	5	62	23	28	12	35	1.91
33610025--33610162	39	3.9	32	81	12	107	45	21	3	29	1.68
33610048--33610173	39	3.3	39	86	5	186	48	21	3	26	1.65
33610056--33610169	37	3.0	37	88	5	183	46	21	3	28	1.68
33610779--33610814	18	2.0	18	94	0	63	41	27	11	19	1.85
33611724--33612250	269	2.0	269	97	0	1000	31	10	25	32	1.89
33613320--33613366	20	2.3	20	88	0	76	21	10	36	31	1.88
33616349--33616395	20	2.3	20	85	0	67	21	12	36	29	1.91
33619336--33619391	12	4.4	12	73	18	51	17	5	5	71	1.24
33620870--33620916	20	2.3	20	85	0	67	21	12	36	29	1.91
33623773--33623819	20	2.3	20	85	0	67	21	12	36	29	1.91
33628115--33628166	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33633673--33633697	6	4.2	6	100	0	50	16	0	0	84	0.63
33634892--33634953	13	4.6	13	77	13	63	72	3	8	16	1.21
33634932--33634997	29	2.4	27	78	12	71	72	6	16	4	1.21
33635978--33636084	6	17.7	6	67	12	58	71	3	17	6	1.22
33635982--33636040	18	3.3	18	82	0	73	74	6	13	5	1.19
33644557--33644589	13	2.6	13	95	4	59	78	6	3	12	1.04
33644627--33644666	13	3.0	13	85	7	62	62	0	12	25	1.30
33644627--33644666	14	2.9	14	88	3	64	62	0	12	25	1.30
33646399--33646446	20	2.4	20	67	0	51	33	18	27	20	1.96
33648074--33648149	27	2.8	27	80	11	68	9	22	1	67	1.27
33648112--33648231	12	10.0	12	69	19	63	8	17	3	70	1.25
33648068--33648133	13	4.7	14	74	10	55	9	22	1	66	1.28
33648075--33648148	14	5.3	14	73	15	55	9	20	1	68	1.24
33648110--33648217	6	17.7	6	69	9	67	6	17	3	72	1.21
33649299--33649323	12	2.1	12	100	0	50	16	0	8	76	1.02
33650839--33650886	20	2.4	20	67	0	51	33	18	27	20	1.96
33655507--33655564	10	5.7	10	76	11	64	29	27	13	29	1.94
33655507--33655567	20	3.0	20	83	9	79	27	26	13	32	1.93
33656915--33656987	11	6.1	11	70	17	56	71	6	6	15	1.29
33656927--33656985	27	2.2	27	84	0	73	72	3	8	15	1.21
33656963--33657037	27	2.6	28	77	10	89	68	8	13	10	1.40
33663178--33663347	40	4.3	40	84	0	198	24	29	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33667763--33667820	10	5.7	10	76	11	64	29	27	13	29	1.94
33667763--33667823	20	3.0	20	83	9	79	27	26	13	32	1.93
33671043--33671093	11	4.5	11	78	4	57	17	1	3	76	1.03
33676490--33676514	13	1.9	13	100	0	50	16	32	16	36	1.90
33677842--33677875	18	1.9	18	88	5	52	52	2	35	8	1.47
33679753--33679777	13	1.9	13	100	0	50	16	32	16	36	1.90
33682506--33682553	13	3.5	13	78	16	53	2	20	0	77	0.88
33685508--33685584	12	6.4	12	69	16	52	62	1	24	11	1.37
33685531--33685564	15	2.3	15	89	0	50	67	0	29	2	1.05
33695846--33695883	10	3.8	10	83	13	51	21	18	31	28	1.97
33695823--33695883	20	3.0	20	83	9	63	27	14	27	29	1.95
33695847--33695884	20	1.9	20	94	0	67	18	18	34	28	1.95
33703298--33703430	24	5.5	24	84	7	153	24	7	22	45	1.78
33708282--33708333	23	2.3	22	75	21	54	9	23	1	65	1.32
33709655--33709688	9	3.7	9	92	4	50	8	5	11	73	1.24
33724011--33724040	11	2.7	11	100	0	60	80	6	6	6	1.04
33724010--33724070	13	4.8	13	84	9	72	75	3	6	14	1.13
33724033--33724071	14	2.8	14	100	0	78	74	0	5	20	1.01
33730846--33730870	13	1.9	13	100	0	50	36	16	32	16	1.90
33733085--33733119	18	1.9	18	88	11	54	22	20	0	57	1.41
33734050--33734116	13	4.7	14	77	15	66	14	7	2	74	1.16
33734036--33734116	14	5.7	13	77	15	72	12	8	4	74	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33734095--33734128	11	2.8	12	91	8	52	8	2	8	79	1.03
33734051--33734127	13	5.6	13	71	17	57	12	6	3	76	1.12
33735159--33735183	13	1.9	13	100	0	50	36	16	32	16	1.90
33740077--33740123	20	2.3	20	85	0	67	21	12	36	29	1.91
33741794--33741899	48	2.2	48	85	9	137	14	24	1	59	1.45
33741963--33742018	21	2.7	21	72	5	51	8	17	1	71	1.21
33741962--33742018	14	4.1	14	75	16	57	8	17	1	71	1.19
33742025--33742083	18	3.3	18	80	0	73	5	16	6	71	1.26
33741980--33742087	6	17.7	6	68	5	65	6	19	3	70	1.25
33743156--33743189	10	3.3	10	91	4	50	14	2	8	73	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221