genome.fa.s26.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  98  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29931128--29931179	16	3.2	16	91	0	86	28	0	32	38	1.57
29931395--29931449	15	3.4	16	80	16	53	50	1	0	47	1.11
29931415--29931449	18	2.0	17	88	5	52	54	0	0	45	0.99
29931535--29931569	18	2.0	17	88	5	52	54	0	0	45	0.99
29931430--29931620	61	3.2	60	67	20	155	48	5	2	43	1.38
29931393--29931676	120	2.4	120	90	2	446	48	4	1	44	1.34
29933577--29933613	19	1.9	19	94	0	65	29	18	18	32	1.96
29934643--29934672	15	2.0	15	93	0	51	50	20	23	6	1.71
29935003--29935102	28	3.6	28	94	1	175	42	6	0	52	1.26
29938402--29938451	27	1.9	25	84	8	64	64	2	0	34	1.05
29944978--29945056	37	2.1	37	85	0	104	25	29	18	26	1.98
29945178--29945555	47	8.0	47	93	1	585	27	32	9	30	1.89
29948999--29949234	40	5.9	40	94	0	391	24	27	22	25	2.00
29949540--29949618	29	2.7	29	86	5	106	27	32	15	24	1.95
29951497--29951575	37	2.1	37	88	0	113	25	30	18	25	1.98
29951699--29952134	49	8.9	48	87	7	558	28	31	8	30	1.88
29951694--29952137	47	9.1	47	86	8	584	28	31	8	31	1.87
29951694--29952134	106	4.5	100	85	8	570	28	31	8	31	1.87
29958310--29958343	7	4.5	8	92	7	54	70	0	17	11	1.16
29958311--29958353	14	3.1	14	86	6	52	65	0	20	13	1.27
29959710--29959996	44	6.5	44	72	9	210	31	18	20	29	1.97
29959710--29960109	219	1.8	219	90	1	649	33	17	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29960133--29961297	50	23.3	50	69	8	639	31	24	21	23	1.98
29960103--29961393	100	12.9	100	87	1	1453	31	24	21	23	1.98
29961161--29961316	50	3.1	50	67	15	142	29	25	21	23	1.99
29961188--29961343	50	3.1	50	66	15	133	28	23	25	22	1.99
29979531--29979688	43	3.7	42	78	7	113	31	26	17	24	1.97
29984159--29984219	29	2.1	29	90	3	97	29	14	27	27	1.95
29984171--29984332	28	5.7	29	85	5	163	27	12	32	27	1.93
29984183--29984332	57	2.6	57	81	8	189	28	12	32	27	1.92
29984200--29984332	28	4.7	28	87	6	171	27	12	33	27	1.92
29984183--29984332	56	2.6	56	82	10	187	28	12	32	27	1.92
29986230--29986320	42	2.2	42	96	2	166	14	20	24	40	1.90
29998066--29998105	18	2.2	18	86	0	53	45	25	22	7	1.78
29999628--29999669	13	3.0	14	86	10	59	71	0	21	7	1.09
30003368--30003445	29	2.7	28	80	11	95	25	14	30	29	1.94
30005135--30005212	38	2.1	38	97	0	147	28	21	14	35	1.92
30008882--30009265	50	7.6	50	79	2	374	25	17	26	30	1.97
30008933--30009265	101	3.3	100	86	2	427	25	18	26	29	1.98
30013409--30013539	39	3.4	39	89	1	192	25	22	28	23	2.00
30013409--30013565	78	2.0	78	83	2	199	23	24	28	24	2.00
30017167--30017342	46	3.8	46	75	10	171	22	19	26	30	1.98
30017163--30017334	93	1.8	93	91	4	285	23	20	26	29	1.99
30020391--30020415	13	1.9	13	100	0	50	76	16	0	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30024281--30024330	25	2.0	25	100	0	100	32	12	16	40	1.84
30030344--30030394	21	2.4	21	84	12	61	23	3	37	35	1.74
30030598--30030652	22	2.5	23	82	8	62	16	0	30	52	1.44
30030706--30030757	23	2.2	23	82	6	59	46	5	0	48	1.26
30031096--30031163	7	9.3	7	82	6	73	60	0	0	39	0.97
30031095--30031163	22	3.1	22	79	4	84	60	0	0	39	0.97
30031069--30031156	7	10.9	8	77	18	67	61	2	0	36	1.09
30031093--30031152	30	2.0	30	90	6	95	65	0	0	35	0.93
30034746--30035101	23	15.5	22	77	8	270	33	6	23	36	1.81
30034756--30035104	69	5.1	68	77	7	321	33	6	23	36	1.81
30035937--30036052	42	2.7	43	87	2	171	24	31	20	23	1.98
30037439--30037580	40	3.6	41	85	4	202	28	26	21	23	1.99
30045094--30045345	40	6.3	40	89	3	330	23	19	27	28	1.98
30050895--30050968	29	2.6	29	86	4	96	25	31	16	27	1.96
30052612--30052694	40	2.1	40	95	0	148	28	26	21	22	1.99
30059301--30059560	40	6.5	40	94	1	416	27	27	22	22	1.99
30059991--30060049	11	5.4	11	100	0	118	0	37	0	62	0.95
30065958--30066129	46	3.7	46	77	13	190	20	19	29	30	1.97
30070088--30070149	30	2.1	29	90	3	97	30	3	9	56	1.47
30074100--30074145	21	2.0	21	84	12	56	50	6	6	36	1.54
30085540--30085642	51	2.0	51	84	3	136	36	29	13	20	1.91
30091028--30091120	40	2.3	40	88	0	141	33	24	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30095566--30095594	14	2.0	15	93	6	51	27	0	20	51	1.47
30095808--30095852	25	1.9	23	82	13	56	55	4	4	35	1.40
30096864--30096905	15	2.7	15	92	3	66	19	23	28	28	1.98
30117749--30117785	16	2.3	16	90	0	56	21	8	8	62	1.49
30120389--30120566	27	6.6	27	83	3	196	26	15	28	29	1.96
30120390--30120540	82	1.9	81	88	4	232	27	16	27	28	1.97
30141132--30141167	13	2.8	13	100	0	72	25	30	22	22	1.99
30142695--30142719	13	1.9	13	100	0	50	32	0	32	36	1.58
30145101--30145133	17	1.9	17	93	0	57	18	0	18	63	1.31
30154133--30154172	20	2.0	20	85	9	55	37	10	12	40	1.77
30162399--30162432	16	2.1	17	94	5	61	41	5	17	35	1.74
30166275--30166322	25	1.9	25	87	8	71	43	10	14	31	1.79
30169024--30169353	114	2.9	114	89	1	518	27	23	14	34	1.93
30172512--30172542	11	2.7	11	95	5	53	19	0	22	58	1.40
30172568--30172611	23	1.9	23	85	0	61	29	2	6	61	1.34
30181510--30181593	39	2.2	39	84	0	105	32	5	19	42	1.75
30181530--30181626	39	2.5	39	79	0	113	29	4	21	44	1.71
30187577--30187762	40	4.7	40	87	5	234	26	26	22	24	2.00
30191904--30192414	218	2.3	219	84	4	658	28	23	17	30	1.97
30195716--30195845	65	2.0	65	100	0	260	30	21	15	32	1.94
30200371--30200410	21	1.9	21	84	0	53	22	30	0	47	1.52
30205199--30205250	21	2.5	19	80	17	59	59	7	5	26	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30209837--30210143	27	11.4	26	83	6	337	17	18	21	41	1.90
30209837--30210143	54	5.7	54	89	2	393	17	18	21	41	1.90
30209826--30210130	81	3.8	81	87	0	387	18	18	22	40	1.91
30211513--30211803	50	5.7	51	86	5	322	26	20	29	22	1.99
30211566--30211909	50	6.9	50	83	1	388	27	20	28	22	1.99
30219764--30219826	32	2.0	32	96	3	119	49	12	6	31	1.66
30224944--30224969	6	4.3	6	100	0	52	84	0	0	15	0.62
30225018--30225064	20	2.4	19	89	6	76	0	14	10	74	1.07
30225604--30225668	32	2.1	32	97	2	123	47	12	9	30	1.72
30240093--30240148	17	3.2	17	78	14	60	12	23	3	60	1.47
30240150--30240197	15	3.3	14	80	8	60	4	18	0	77	0.93
30240150--30240208	21	2.8	21	87	5	75	6	22	0	71	1.09
30241209--30241251	12	3.7	11	84	9	59	16	2	0	81	0.79
30241204--30241240	13	2.9	13	80	19	51	21	8	0	70	1.13
30241210--30241252	11	3.9	10	82	17	50	18	2	0	79	0.85
30250541--30250581	18	2.4	17	83	4	55	73	2	7	17	1.17
30252533--30252587	27	2.0	28	86	6	78	50	14	10	23	1.74
30254278--30254319	18	2.3	18	87	0	66	57	7	7	28	1.52
30259447--30259491	21	2.1	21	100	0	90	33	4	15	46	1.66
30261137--30261213	38	2.0	38	100	0	154	38	18	7	35	1.79
30266051--30266193	62	2.3	62	84	2	171	42	8	13	35	1.74
30267945--30267990	23	2.0	24	86	4	67	23	6	8	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30273331--30273603	145	1.9	144	94	0	483	30	23	15	30	1.96
30273586--30273653	29	2.3	29	82	5	84	27	29	13	29	1.94
30273443--30273803	175	2.1	174	97	0	677	30	24	14	29	1.95
30273756--30273834	29	2.7	30	82	13	110	30	30	13	25	1.94
30277585--30277660	9	8.4	9	86	0	107	38	26	9	26	1.86
30290954--30291163	29	7.2	29	81	3	206	22	25	12	38	1.90
30310179--30310240	20	3.1	20	73	0	61	14	27	16	41	1.87
30310249--30310293	20	2.2	21	80	11	58	8	31	26	33	1.87
30311800--30311875	38	2.0	38	94	0	134	15	18	13	52	1.74
30312509--30312556	25	1.9	25	95	0	87	31	8	10	50	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221