genome.fa.s26.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  112  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34389417--34389454	14	2.7	15	92	8	62	42	18	2	36	1.64
34389688--34389726	15	2.5	17	76	23	50	56	0	23	20	1.42
34390316--34390404	31	2.8	31	81	3	88	49	7	14	28	1.71
34390380--34390425	24	2.0	24	91	4	76	60	8	8	21	1.53
34392481--34392514	17	2.0	17	88	0	50	29	0	2	67	1.05
34397038--34397088	21	2.4	22	76	3	59	47	0	0	52	1.00
34397051--34397099	22	2.3	22	86	10	66	38	0	2	59	1.09
34397021--34397117	31	3.2	29	78	16	90	42	0	2	55	1.11
34409997--34410050	20	2.8	20	80	5	58	53	7	5	33	1.52
34421324--34421361	3	12.7	3	100	0	76	68	0	0	31	0.90
34422983--34423066	44	1.9	44	82	4	107	23	20	22	33	1.97
34423139--34423407	44	6.2	44	70	10	133	27	21	19	30	1.98
34423047--34423456	174	2.4	174	91	1	660	26	21	20	31	1.98
34423264--34423717	219	2.1	219	90	1	723	26	23	20	29	1.99
34423519--34423630	44	2.5	44	78	5	111	29	17	20	32	1.96
34423755--34423939	44	4.2	44	66	8	124	25	23	21	29	1.99
34425144--34425177	7	5.0	7	92	7	61	14	14	0	70	1.17
34425144--34425173	13	2.3	13	100	0	60	13	13	0	73	1.10
34426021--34426080	30	2.2	26	85	11	75	10	11	8	70	1.35
34434969--34435204	82	2.8	84	78	10	239	44	12	13	28	1.81
34434991--34435302	88	3.6	86	81	8	316	42	11	14	31	1.81
34434991--34435365	87	4.4	86	80	8	365	43	11	14	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34435602--34435642	20	2.0	21	85	4	57	65	0	2	31	1.05
34435666--34435715	21	2.4	20	73	26	50	58	14	12	16	1.64
34435499--34436494	502	2.0	501	93	0	1704	39	14	15	30	1.87
34444467--34444700	68	3.4	68	84	0	315	24	15	30	29	1.95
34444765--34445204	71	6.2	71	77	2	357	21	17	25	35	1.95
34447097--34447121	10	2.5	10	100	0	50	20	8	28	44	1.79
34447367--34447407	20	2.2	19	91	8	66	31	0	19	48	1.49
34449909--34450012	49	2.1	49	87	3	147	30	8	11	49	1.69
34451347--34451606	109	2.2	116	83	10	329	42	1	4	51	1.30
34451734--34451839	44	2.5	41	79	18	135	35	31	3	29	1.75
34451751--34451841	46	2.0	46	93	4	159	38	30	4	26	1.76
34451821--34451889	16	4.3	16	94	0	120	21	33	5	39	1.77
34451914--34452077	71	2.3	71	84	0	220	26	18	23	32	1.97
34452106--34452150	21	2.1	21	95	0	81	33	15	26	24	1.95
34452127--34452701	71	8.2	71	81	3	572	23	14	25	36	1.93
34452557--34452681	64	2.0	64	85	3	171	22	14	25	37	1.92
34452621--34452800	92	2.0	92	83	4	229	25	16	23	35	1.95
34452709--34453070	142	2.5	141	82	2	413	23	17	24	35	1.95
34452709--34453052	71	4.8	71	81	1	357	24	16	23	35	1.95
34454945--34455000	16	3.4	16	78	9	58	69	5	5	19	1.28
34456046--34456077	12	2.7	12	90	0	55	84	0	6	9	0.78
34459302--34459379	38	2.1	38	97	0	147	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34461097--34461162	24	2.8	24	86	6	82	72	1	19	6	1.13
34461096--34461160	6	10.8	6	75	18	55	73	1	18	6	1.11
34465835--34465993	75	2.1	75	83	4	196	28	13	14	43	1.84
34473863--34473949	20	4.3	20	76	15	90	27	9	17	45	1.78
34477529--34477651	41	3.0	41	97	0	237	45	9	2	42	1.50
34488503--34488552	21	2.4	22	80	12	61	62	4	20	14	1.47
34488361--34489182	413	2.0	407	90	3	1310	47	20	10	21	1.81
34491685--34491781	40	2.4	40	81	10	117	35	6	12	46	1.67
34491685--34491771	20	4.3	20	78	10	97	33	6	13	45	1.70
34499264--34499637	185	2.0	185	91	0	604	43	16	13	27	1.85
34500006--34500264	132	2.0	131	87	7	375	38	6	5	49	1.52
34500740--34500800	26	2.3	26	78	18	72	65	1	0	32	1.02
34506192--34506256	16	3.9	16	72	9	58	20	1	30	47	1.59
34506858--34506922	28	2.2	29	76	12	71	60	3	1	35	1.22
34507008--34507038	16	1.9	16	93	0	53	48	0	0	51	1.00
34507465--34507490	13	2.0	13	100	0	52	46	7	23	23	1.78
34510088--34510135	19	2.6	19	78	18	57	60	0	2	37	1.09
34510088--34510150	13	5.2	12	70	22	51	61	0	3	34	1.12
34510357--34510417	30	2.0	31	90	3	97	44	0	36	19	1.51
34515154--34515192	20	2.0	19	85	5	51	48	0	0	51	1.00
34520406--34520628	43	5.2	43	82	2	259	29	28	18	23	1.98
34523272--34523553	78	3.6	78	94	2	467	39	3	13	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34523723--34523903	78	2.3	78	80	5	199	38	2	17	41	1.61
34524301--34524608	41	7.5	41	92	0	465	27	22	27	22	1.99
34524301--34524608	82	3.8	82	95	0	517	27	22	27	22	1.99
34530191--34530240	24	2.0	25	85	11	68	62	2	2	34	1.18
34530277--34530315	13	3.1	12	85	7	51	33	0	0	66	0.92
34531046--34531124	38	2.1	37	83	6	97	58	1	1	39	1.14
34531054--34531118	19	3.4	19	73	12	53	63	1	0	35	1.04
34531067--34531125	18	3.2	18	74	9	55	59	0	1	38	1.08
34531187--34531225	12	3.4	11	85	7	51	87	0	10	2	0.65
34533292--34533350	20	2.9	21	73	9	59	35	5	0	59	1.20
34533276--34533345	31	2.3	30	83	9	88	40	2	0	57	1.14
34553797--34553836	21	1.9	21	89	0	62	75	2	12	10	1.15
34553968--34554040	29	2.5	29	78	17	80	46	12	13	27	1.79
34554111--34554142	14	2.3	14	94	0	55	0	15	0	84	0.63
34555439--34555478	21	1.9	21	85	10	55	35	10	5	50	1.58
34560931--34560974	23	1.9	23	90	0	70	38	29	15	15	1.89
34562074--34562101	12	2.3	12	100	0	56	32	0	17	50	1.47
34571894--34571932	20	2.0	20	100	0	78	41	5	12	41	1.65
34574890--34574949	20	3.1	19	72	15	59	58	0	3	38	1.15
34575297--34575372	9	8.4	9	85	0	98	42	21	9	27	1.83
34575304--34575372	27	2.6	27	92	0	111	40	23	10	26	1.86
34577493--34577534	21	1.9	23	85	9	61	35	0	35	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34579768--34579808	21	2.0	21	90	0	64	43	21	19	14	1.87
34582229--34582318	30	3.2	27	75	7	90	17	18	17	45	1.86
34582229--34582326	28	3.5	28	76	6	108	18	18	17	45	1.85
34582478--34582622	77	1.9	77	97	0	272	40	6	16	35	1.75
34593563--34593625	31	2.0	31	100	0	126	42	12	22	22	1.87
34596461--34596505	23	2.0	23	91	4	74	46	17	4	31	1.68
34596458--34596515	22	2.6	22	86	7	82	43	18	3	34	1.68
34596471--34596528	19	2.8	20	84	10	64	39	17	6	36	1.76
34596737--34596772	5	7.2	5	87	0	54	44	16	16	22	1.86
34597686--34597722	9	4.1	9	92	0	65	29	10	13	45	1.77
34607307--34607435	36	3.6	35	89	4	168	42	31	11	14	1.82
34610932--34611014	37	2.2	38	82	4	98	31	18	13	37	1.89
34611864--34611918	22	2.4	23	85	8	69	45	12	5	36	1.66
34614349--34614466	41	2.9	41	93	0	191	21	18	31	28	1.97
34614853--34615244	201	2.0	200	87	5	576	29	2	26	41	1.69
34615375--34615408	14	2.4	14	90	9	52	23	2	44	29	1.68
34615794--34615944	73	2.1	71	92	4	250	50	9	8	31	1.65
34618714--34618881	86	2.0	86	84	0	219	32	10	16	41	1.82
34618282--34619015	349	2.1	338	79	6	751	30	11	14	43	1.81
34619085--34619343	86	3.0	85	88	1	347	30	8	18	43	1.79
34619329--34619361	12	2.8	12	95	0	57	45	9	9	36	1.68
34620088--34620127	21	2.0	20	85	5	53	30	2	12	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34622281--34622328	17	2.9	17	82	11	55	16	4	2	77	1.03
34622301--34622392	37	2.5	37	77	18	102	21	9	1	67	1.26
34625458--34625507	19	2.5	20	83	6	57	40	8	12	40	1.72
34625486--34625530	23	2.0	23	86	4	65	37	6	17	37	1.76
34625472--34625533	19	3.0	21	79	11	65	37	6	16	40	1.74
34632369--34633262	132	6.8	132	94	0	1506	28	18	24	29	1.98
34633588--34633698	19	5.8	19	86	0	168	40	9	13	36	1.76
34633595--34633698	38	2.7	38	96	0	190	41	8	12	37	1.74
34633839--34633868	16	1.9	16	93	6	53	66	0	30	3	1.07
34636614--34636668	26	2.1	26	93	0	92	30	5	5	58	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221