genome.fa.s26.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  160  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48281638--48281673	12	3.0	12	91	0	54	2	36	16	44	1.63
48287168--48287357	9	22.4	9	74	12	143	30	2	21	45	1.65
48287169--48287445	25	11.0	25	72	11	108	32	2	18	46	1.64
48287195--48287278	34	2.5	34	94	0	141	28	5	21	44	1.76
48287157--48287357	16	12.5	16	71	15	105	30	2	20	46	1.64
48287263--48287357	41	2.3	41	85	7	122	31	1	18	48	1.56
48287290--48287397	41	2.6	41	85	2	126	34	1	15	48	1.56
48287379--48287448	24	2.8	25	78	8	70	34	1	12	51	1.49
48287676--48287728	23	2.2	23	83	6	61	50	5	3	39	1.44
48288358--48288384	7	3.9	7	100	0	54	14	29	25	29	1.95
48288807--48288930	41	3.1	41	86	4	164	32	3	41	22	1.70
48288865--48288944	40	2.0	40	85	4	108	35	5	43	16	1.69
48288898--48288949	24	2.2	24	86	6	70	36	3	40	19	1.70
48289482--48289534	22	2.5	22	90	3	81	39	22	3	33	1.72
48289487--48289579	29	3.2	29	74	8	82	38	29	3	29	1.73
48290108--48290695	114	5.1	115	64	19	368	29	18	19	31	1.96
48290007--48290916	229	4.0	229	93	2	1484	29	19	19	31	1.96
48290167--48290766	115	5.2	115	66	14	421	30	19	19	31	1.96
48290657--48290734	39	2.0	39	82	0	93	35	14	17	32	1.90
48292418--48292528	37	3.0	37	78	13	115	41	2	3	52	1.33
48297395--48297767	183	2.0	183	81	5	423	32	27	10	30	1.90
48299489--48299555	27	2.5	26	76	7	71	19	13	2	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48311006--48311205	43	4.7	41	77	7	186	34	25	18	22	1.96
48310980--48311202	42	5.3	42	74	8	184	35	24	17	23	1.95
48310980--48311205	85	2.7	85	87	0	310	34	24	16	23	1.95
48318605--48318927	85	3.8	85	92	1	497	34	26	17	21	1.96
48318613--48318924	42	7.4	42	77	9	321	34	26	17	21	1.95
48318901--48318953	26	2.0	26	96	0	97	24	33	22	18	1.97
48322921--48322966	23	2.0	23	100	0	92	30	21	8	39	1.84
48330675--48330719	22	2.0	22	83	8	56	37	0	0	62	0.96
48346940--48347114	7	24.6	7	67	12	52	44	32	1	21	1.62
48346963--48347002	21	1.9	21	94	0	71	42	40	0	17	1.49
48346990--48347038	22	2.3	22	85	3	64	48	32	0	18	1.48
48347169--48347217	15	3.4	15	86	8	66	46	36	0	16	1.47
48347169--48347222	22	2.5	21	81	3	63	48	33	0	18	1.49
48346919--48347280	14	24.9	14	65	14	110	45	31	1	20	1.62
48347650--48347902	41	6.1	42	74	10	173	30	28	20	21	1.98
48347662--48347896	123	1.9	122	81	6	278	30	27	20	21	1.98
48347691--48347902	82	2.6	78	76	10	201	30	28	19	21	1.98
48347969--48348053	39	2.2	40	85	6	111	27	20	17	35	1.95
48350126--48350205	40	2.0	40	87	2	115	21	23	23	31	1.98
48350127--48350238	41	2.8	40	82	6	120	20	24	25	30	1.99
48350677--48350709	7	4.7	7	100	0	66	15	0	54	30	1.41
48350684--48350717	14	2.4	14	90	0	50	20	0	50	29	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48350677--48350717	21	2.0	21	90	0	64	19	0	51	29	1.47
48350746--48350892	63	2.3	63	86	4	195	31	0	21	45	1.57
48350957--48351025	28	2.5	28	83	4	77	20	0	40	39	1.52
48351643--48351687	21	2.2	20	88	11	65	80	0	6	13	0.91
48353201--48353263	33	1.9	33	93	0	108	20	0	14	65	1.27
48354161--48354193	16	2.1	16	100	0	66	51	0	18	30	1.46
48354256--48354731	9	52.1	9	68	24	109	46	13	1	38	1.52
48354291--48354323	16	2.1	16	100	0	66	45	24	0	30	1.53
48354310--48354705	31	12.5	31	80	8	447	47	12	1	38	1.52
48354323--48354703	65	5.9	65	85	5	510	47	12	1	38	1.51
48354684--48354731	16	2.8	17	87	12	71	43	22	0	33	1.54
48358376--48358415	12	3.3	12	85	0	53	42	15	37	5	1.68
48358822--48359072	43	5.9	43	83	6	282	26	23	20	29	1.99
48358823--48359071	85	2.9	86	81	7	260	26	24	20	28	1.99
48358822--48359078	128	2.0	127	82	8	308	26	23	19	30	1.98
48362085--48362239	43	3.6	42	76	6	143	30	28	16	23	1.96
48364383--48364423	20	2.0	20	90	0	64	56	2	4	36	1.34
48366068--48366357	44	6.6	44	72	7	196	25	24	20	30	1.99
48366194--48366360	87	1.9	87	91	0	271	24	23	20	30	1.99
48366063--48366315	131	1.9	131	85	3	348	25	24	20	29	1.99
48366068--48366357	131	2.2	131	81	3	334	25	24	20	30	1.99
48366557--48366888	44	7.6	44	74	6	262	28	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48366448--48367045	212	2.8	218	87	3	865	29	20	17	32	1.95
48403606--48403688	26	3.2	26	87	0	121	42	24	18	15	1.89
48403865--48403944	27	3.0	27	83	7	108	28	17	16	37	1.91
48403908--48404099	27	7.1	27	79	10	180	21	14	16	46	1.83
48403908--48404099	54	3.6	53	83	5	226	21	14	16	46	1.83
48403908--48404099	80	2.4	81	76	9	194	21	14	16	46	1.83
48406800--48406838	20	2.0	20	94	0	69	74	0	0	25	0.82
48407941--48408018	29	2.7	28	84	11	104	25	15	30	28	1.96
48407971--48408298	174	1.9	174	96	0	611	30	14	24	30	1.94
48421527--48421724	45	4.5	45	80	5	188	24	15	25	34	1.94
48421522--48421685	89	1.8	90	85	1	231	26	14	23	34	1.94
48425986--48426024	20	2.0	20	94	0	69	74	0	0	25	0.82
48428211--48428237	13	2.1	13	100	0	54	40	14	7	37	1.74
48432036--48432061	13	2.0	13	100	0	52	38	7	7	46	1.61
48438795--48439099	43	7.1	42	89	2	425	19	17	32	30	1.95
48439970--48439994	11	2.3	11	100	0	50	60	0	24	16	1.36
48452466--48452509	16	2.9	14	78	21	52	45	9	0	45	1.35
48452466--48452537	32	2.3	31	83	9	83	45	11	0	43	1.39
48463222--48463566	180	1.9	180	88	1	521	22	31	10	35	1.88
48470426--48470457	13	2.5	13	95	5	57	53	18	0	28	1.45
48473579--48473676	43	2.3	43	90	0	160	55	2	3	39	1.27
48476990--48477022	15	2.1	16	88	5	50	6	18	3	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48485921--48485965	13	3.5	13	90	0	72	33	44	20	2	1.63
48489226--48489282	20	2.8	20	100	0	114	40	0	5	54	1.23
48490824--48490879	27	2.1	27	83	3	69	33	23	26	16	1.95
48490694--48491065	105	3.6	104	89	2	568	30	28	20	19	1.97
48491394--48491458	30	2.2	29	81	8	76	30	27	6	35	1.81
48491401--48491458	30	1.9	30	85	0	80	31	24	6	37	1.82
48492280--48492318	16	2.4	16	86	0	60	30	30	5	33	1.79
48495118--48495199	25	3.4	25	70	21	66	17	29	21	31	1.96
48495065--48495233	26	6.8	24	71	11	92	16	25	23	34	1.95
48495285--48495332	25	1.9	25	86	0	69	25	29	14	31	1.95
48497738--48497861	46	2.8	46	91	3	200	27	22	16	33	1.96
48497738--48497933	37	4.7	45	85	10	203	27	21	15	35	1.94
48497823--48497962	37	3.8	37	95	0	235	27	21	12	38	1.90
48500344--48500488	74	2.0	73	94	4	256	34	17	20	27	1.95
48500885--48501024	41	3.3	41	73	14	138	54	2	6	37	1.38
48500850--48500980	51	2.6	48	75	10	118	53	1	7	37	1.39
48500843--48501033	45	4.2	44	74	17	160	54	1	6	37	1.35
48501007--48501087	33	2.5	33	74	16	80	43	2	8	45	1.48
48503065--48503232	50	3.4	50	75	0	165	24	23	23	28	2.00
48503050--48503230	100	1.8	100	87	0	272	24	22	22	30	1.99
48515093--48515237	74	2.0	73	90	1	227	37	17	18	26	1.93
48515612--48515646	10	3.5	10	100	0	70	42	0	8	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48515602--48515655	20	2.7	21	77	8	67	51	0	7	40	1.30
48515716--48515745	14	2.1	14	93	0	51	50	0	10	40	1.36
48515913--48515939	3	9.0	3	100	0	54	33	0	33	33	1.58
48517942--48518184	50	4.7	50	84	3	288	24	21	30	23	1.99
48518433--48518471	4	9.8	4	82	0	51	51	2	23	23	1.61
48518766--48518890	60	2.1	60	98	0	241	41	8	20	29	1.81
48519531--48519750	43	5.1	43	77	3	185	28	29	17	25	1.97
48519488--48519750	86	3.1	84	81	8	280	27	28	18	26	1.98
48519440--48519750	86	3.6	86	78	7	276	26	27	20	26	1.99
48519589--48519768	85	2.1	86	85	3	238	26	30	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221