Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  148  of  221  ( 26413 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45168875--45169011
17
7.6
18
72
18
99
43
10
10
36
1.73
45168875--45169014
18
7.7
19
72
20
97
42
10
10
36
1.73
45168864--45169010
35
4.1
36
82
10
176
43
10
10
34
1.75
45169711--45169794
9
9.1
9
79
7
80
0
20
0
79
0.73
45169697--45169794
25
4.0
25
76
15
62
4
17
0
78
0.90
45169712--45169794
15
5.1
15
81
11
76
0
20
0
79
0.73
45169738--45169798
3
20.0
3
88
6
63
0
26
0
73
0.83
45169725--45169797
15
4.5
17
88
10
100
0
23
0
76
0.78
45170154--45170312
29
5.4
29
77
3
149
44
6
16
32
1.73
45170154--45170312
87
1.8
87
86
2
230
44
6
16
32
1.73
45170154--45170313
59
2.8
57
80
7
180
43
6
16
33
1.73
45170310--45170343
10
3.4
10
100
0
68
17
0
8
73
1.08
45174077--45174170
48
2.0
48
91
0
152
39
14
14
30
1.87
45175084--45175123
6
6.7
6
88
8
55
12
5
0
82
0.82
45176112--45176165
24
2.2
24
78
12
58
42
5
3
48
1.44
45176249--45176305
16
3.4
17
78
9
55
31
7
3
57
1.42
45176348--45176424
35
2.2
33
82
13
93
40
7
1
50
1.39
45176456--45176698
120
2.0
120
97
0
459
35
12
5
46
1.66
45188673--45188788
49
2.4
49
94
0
196
29
19
19
31
1.97
45190631--45190700
30
2.3
31
80
11
81
40
11
1
47
1.49
45190900--45190976
35
2.2
33
84
13
102
38
7
1
51
1.39
45192531--45192599
22
3.0
23
80
8
77
37
8
0
53
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45192529--45192599
24
3.0
24
81
8
92
38
8
0
53
1.31
45192715--45192773
30
2.0
29
90
3
91
30
11
5
52
1.59
45194705--45194747
19
2.3
19
84
8
52
23
20
16
39
1.92
45196916--45196966
7
7.7
7
95
4
81
76
0
15
7
1.00
45198761--45198896
43
3.2
43
63
15
100
27
27
22
22
1.99
45198583--45199753
88
13.4
88
88
2
1347
27
23
23
25
2.00
45199140--45199730
44
13.4
43
61
17
117
27
24
22
25
2.00
45199710--45199798
45
2.0
45
81
0
106
31
23
22
22
1.98
45199748--45199865
62
1.9
62
83
0
155
32
22
24
20
1.98
45199925--45200130
95
2.2
95
89
1
306
32
15
21
30
1.94
45199974--45200149
95
1.9
94
84
4
221
33
16
19
30
1.94
45200117--45200388
132
2.1
132
88
0
400
34
19
21
25
1.96
45202153--45202221
24
3.0
24
80
6
79
37
10
0
52
1.36
45202337--45202395
30
2.0
29
90
3
91
30
11
5
52
1.59
45206420--45206935
109
4.7
109
88
5
749
34
19
16
30
1.93
45206420--45206935
217
2.4
218
90
3
799
34
19
16
30
1.93
45207360--45207408
3
16.0
3
82
4
62
59
0
4
36
1.17
45209092--45209270
95
1.9
94
91
1
295
31
23
16
29
1.96
45209477--45209879
44
9.2
44
63
15
152
23
24
24
27
2.00
45209459--45209926
88
5.3
88
93
0
776
24
25
23
26
2.00
45209521--45209923
44
9.2
44
66
12
209
25
25
23
26
2.00
45211159--45211209
22
2.3
22
90
6
77
13
15
0
70
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45211159--45211209
15
3.5
14
87
12
68
13
15
0
70
1.17
45211159--45211209
7
7.0
7
87
12
68
13
15
0
70
1.17
45211168--45211210
8
5.6
8
94
5
63
11
13
0
74
1.07
45211987--45212019
17
1.9
17
93
0
57
0
15
0
84
0.61
45211987--45212016
8
3.6
8
91
8
51
0
13
0
86
0.57
45211987--45212019
9
3.8
9
84
8
50
0
15
0
84
0.61
45213246--45213271
13
2.0
13
100
0
52
15
23
23
38
1.92
45216175--45216216
18
2.4
17
84
11
57
30
9
7
52
1.61
45216651--45216689
3
13.0
3
88
0
60
66
0
2
30
1.05
45218470--45218621
83
1.8
82
90
1
241
37
5
12
44
1.65
45221037--45221077
18
2.3
19
83
12
59
24
9
0
65
1.22
45221109--45221180
33
2.2
33
94
0
126
37
8
0
54
1.31
45221120--45221181
18
3.6
18
74
12
67
40
9
0
50
1.35
45221100--45221162
3
21.0
3
88
0
72
33
6
1
58
1.33
45223405--45223749
46
7.6
46
91
2
522
28
21
15
34
1.94
45225237--45225300
3
21.3
3
77
6
67
64
4
1
29
1.23
45226776--45227206
50
8.6
50
70
1
297
21
24
23
30
1.99
45226714--45227206
100
4.9
100
90
0
754
21
24
23
29
1.99
45227229--45228605
88
15.6
88
89
1
2001
23
26
21
27
1.99
45229238--45229313
37
2.1
37
97
0
143
28
26
6
38
1.81
45229907--45229954
7
6.7
7
79
11
53
12
8
0
79
0.94
45229906--45229953
20
2.3
19
83
16
60
14
8
0
77
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45229915--45229954
20
2.0
20
90
5
62
12
7
0
80
0.91
45229921--45229954
13
2.5
13
85
4
50
14
2
0
82
0.79
45230448--45230536
1
89.0
1
75
0
70
7
3
2
86
0.76
45230463--45230516
21
2.5
21
88
11
83
12
0
0
87
0.56
45230448--45230536
14
6.7
13
81
10
83
7
3
2
86
0.76
45230463--45230508
7
6.7
7
97
2
85
13
0
0
86
0.56
45230448--45230536
15
6.2
14
80
12
83
7
3
2
86
0.76
45235261--45235330
3
23.3
3
79
5
79
62
2
2
31
1.24
45244850--45244901
3
18.0
3
77
15
56
36
0
1
61
1.07
45244808--45244901
22
4.2
22
72
20
61
30
1
4
63
1.20
45244847--45244904
8
6.9
8
78
18
64
36
0
1
62
1.06
45244847--45244898
23
2.2
23
86
13
70
36
0
1
61
1.07
45253771--45254096
50
6.5
50
68
2
206
28
21
25
25
1.99
45253789--45254096
100
3.1
100
86
3
415
28
21
25
25
1.99
45254138--45254342
82
2.5
82
84
3
243
33
15
20
30
1.94
45255520--45255570
3
17.0
3
80
11
52
37
0
1
60
1.08
45255478--45255570
22
4.2
22
71
19
59
31
1
4
63
1.21
45255517--45255582
25
2.6
25
85
9
80
36
1
1
60
1.15
45255518--45255573
19
2.8
21
72
27
59
37
0
1
60
1.07
45261788--45261860
22
3.4
22
87
7
98
27
5
2
64
1.29
45261779--45261860
43
2.0
41
83
13
105
26
4
2
65
1.25
45262063--45262131
16
4.2
16
92
3
120
24
1
37
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45262063--45262131
33
2.1
32
94
2
120
24
1
37
36
1.65
45262365--45262399
18
2.0
17
88
5
52
54
0
0
45
0.99
45262348--45262607
118
2.2
119
97
2
488
48
6
1
43
1.37
45274526--45274627
1
102.0
1
86
0
132
92
0
0
7
0.40
45275690--45275731
18
2.3
18
100
0
84
50
26
0
23
1.50
45275708--45275817
33
3.3
33
81
8
152
46
14
7
31
1.72
45278795--45279052
119
2.2
117
95
4
457
44
1
6
48
1.37
45278976--45279007
15
2.1
16
94
5
57
50
0
6
43
1.27
45279200--45279288
43
2.0
44
82
2
108
37
29
6
26
1.82
45279269--45279336
16
4.2
16
88
7
111
36
38
1
23
1.64
45279539--45279598
20
3.2
19
84
15
81
80
1
5
13
0.96
45279539--45279584
20
2.2
21
96
3
85
80
2
4
13
0.95
45279555--45279632
25
3.2
25
74
3
68
79
2
2
15
0.95
45279520--45279642
62
1.9
65
84
11
166
73
3
3
20
1.12
45279577--45279634
24
2.4
25
82
5
75
79
1
1
17
0.90
45279577--45279667
36
2.5
35
80
12
85
73
1
1
24
0.96
45279615--45279686
36
2.0
36
83
5
92
66
2
0
30
1.06
45281553--45281646
48
2.0
48
86
0
134
30
15
15
37
1.90
45282823--45282863
21
2.0
21
85
9
57
63
9
9
17
1.51
45285546--45285580
17
2.0
18
88
5
54
62
0
5
31
1.18
45285721--45285770
3
18.0
3
76
15
54
62
2
0
36
1.07
45285718--45285773
8
6.9
8
77
18
62
62
1
0
35
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45285718--45285773
11
4.6
11
76
20
58
62
1
0
35
1.06
45285724--45285750
13
2.1
13
100
0
54
62
0
0
37
0.95
45286942--45287139
82
2.4
82
83
5
231
31
21
15
31
1.94
45286981--45287146
82
2.0
82
87
2
235
32
20
13
33
1.92
45287188--45287495
100
3.1
100
86
3
406
25
25
21
28
1.99
45287188--45287513
50
6.5
50
69
2
179
25
25
21
28
1.99
45306167--45306196
14
2.1
15
93
6
53
43
16
0
40
1.48
45306386--45306417
13
2.4
14
85
15
50
37
12
0
50
1.41
45306327--45306434
52
2.1
52
86
8
148
37
7
1
53
1.40
45306547--45306681
64
2.1
62
80
11
148
50
2
8
38
1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221