genome.fa.s26.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  166  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49701241--49701652	198	2.1	198	91	0	664	33	20	17	28	1.95
49702040--49702131	47	2.0	47	84	0	121	46	3	7	42	1.48
49702119--49702167	18	2.6	20	78	15	59	14	6	2	77	1.05
49702204--49702230	14	1.9	14	100	0	54	44	7	0	48	1.31
49702456--49702545	7	12.9	7	82	4	101	31	48	1	18	1.56
49702644--49702668	12	2.1	12	100	0	50	32	52	0	16	1.44
49703061--49703278	114	1.9	113	80	8	255	29	22	15	32	1.95
49703214--49703353	74	1.9	75	88	4	212	29	22	17	30	1.97
49703088--49703488	188	2.1	188	92	0	667	30	22	15	31	1.95
49703270--49703863	227	2.6	226	89	3	885	28	20	16	33	1.95
49703288--49703868	113	5.1	112	73	10	520	29	20	16	33	1.94
49711380--49711625	43	5.6	43	81	6	278	34	28	18	18	1.95
49711377--49711625	85	2.8	86	84	4	284	34	28	18	18	1.95
49712345--49712369	2	12.5	2	100	0	50	52	48	0	0	1.00
49714198--49714248	26	1.9	27	92	4	86	11	23	19	45	1.83
49714815--49715271	109	4.2	109	95	0	835	38	12	15	33	1.86
49714815--49715271	217	2.1	218	96	0	844	38	12	15	33	1.86
49715668--49715773	31	3.2	29	76	21	95	37	43	1	16	1.60
49715714--49715784	20	3.7	19	78	12	83	38	43	1	16	1.57
49715700--49715811	37	3.0	37	93	0	179	34	44	1	18	1.61
49716053--49716095	18	2.3	18	84	8	50	46	32	0	20	1.51
49716074--49716131	15	3.8	15	82	8	64	37	41	0	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49716088--49716176	15	6.1	15	72	16	71	37	42	1	19	1.58
49716074--49716131	31	1.9	30	86	10	82	37	41	0	20	1.53
49716104--49716173	21	3.3	22	71	15	67	40	40	1	18	1.60
49716388--49716960	114	5.0	113	86	4	731	26	26	22	24	2.00
49716409--49716960	229	2.4	228	87	3	770	26	26	22	24	2.00
49720120--49720207	33	2.7	33	77	11	92	45	19	9	26	1.80
49720186--49720252	34	1.9	35	87	3	100	46	11	8	32	1.72
49725350--49725395	16	2.6	17	80	19	51	45	0	32	21	1.52
49725476--49725535	30	2.0	31	83	9	79	43	0	35	21	1.53
49725749--49725794	9	5.1	9	89	0	74	32	10	13	43	1.78
49725838--49725880	9	4.7	9	82	2	50	34	18	13	32	1.90
49725838--49725880	18	2.3	18	92	4	68	34	18	13	32	1.90
49731364--49731409	23	2.0	23	82	0	56	67	10	10	10	1.43
49735802--49735836	3	11.7	3	100	0	70	65	0	0	34	0.93
49744678--49744753	26	2.9	26	80	3	82	21	25	25	28	1.99
49744704--49744753	13	3.8	13	81	0	55	22	28	26	24	1.99
49744707--49744767	26	2.3	26	82	0	77	24	27	27	19	1.99
49747865--49747940	37	2.1	37	100	0	152	31	19	13	35	1.90
49755229--49755261	16	2.0	17	88	5	50	42	0	24	33	1.55
49755537--49755618	25	3.3	25	94	0	137	23	28	15	32	1.95
49755537--49755634	25	3.9	25	90	2	117	21	26	19	32	1.97
49755537--49755634	50	2.0	50	85	4	135	21	26	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49760872--49760908	14	2.6	14	91	0	56	24	5	5	64	1.36
49761705--49761739	13	2.8	13	86	4	54	37	5	0	57	1.23
49761846--49761876	15	2.0	16	93	6	55	41	6	0	51	1.27
49766176--49766206	16	1.9	16	93	0	53	38	19	0	41	1.51
49766974--49767025	10	4.7	12	79	13	58	0	26	0	73	0.84
49766985--49767027	10	4.1	10	82	11	59	0	20	0	79	0.74
49766974--49767025	22	2.4	22	90	0	86	0	26	0	73	0.84
49769453--49769500	21	2.3	21	82	7	62	54	2	25	18	1.55
49770559--49770587	12	2.4	12	100	0	58	34	41	17	6	1.76
49771697--49772047	130	2.7	130	83	4	422	39	11	15	33	1.84
49774529--49774584	29	1.9	29	85	0	76	16	30	16	37	1.90
49780124--49780166	22	1.9	23	90	4	70	67	0	4	27	1.10
49790791--49790840	19	2.4	21	83	9	59	72	0	2	26	0.96
49790895--49790946	27	1.9	27	88	0	77	13	25	30	30	1.94
49799547--49799595	19	2.4	21	83	10	57	20	2	4	73	1.10
49812619--49812679	23	2.7	23	84	0	86	31	26	19	22	1.98
49812910--49812948	18	2.2	17	86	13	53	46	20	0	33	1.51
49813895--49813926	13	2.3	15	89	10	50	56	18	0	25	1.42
49816181--49816232	26	2.0	26	96	0	95	34	9	26	28	1.88
49817307--49817361	23	2.4	23	78	3	58	52	5	0	41	1.24
49826301--49826450	78	1.9	78	82	2	185	44	12	12	31	1.79
49828743--49828866	30	4.1	30	93	1	203	25	24	6	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49828753--49828860	15	7.2	15	67	12	78	25	22	7	44	1.79
49833436--49833559	30	4.1	30	92	1	194	26	21	6	45	1.76
49833439--49833553	15	7.6	15	68	12	74	26	20	6	46	1.76
49837050--49837158	42	2.6	42	91	0	173	18	32	24	24	1.97
49837321--49837380	29	2.1	29	100	0	120	33	33	3	30	1.74
49837752--49837822	35	2.0	35	100	0	142	29	22	8	39	1.83
49840246--49840492	126	1.9	128	82	4	313	32	17	11	37	1.86
49845816--49845840	5	5.0	5	100	0	50	60	0	40	0	0.97
49847105--49847217	57	2.0	57	91	3	183	30	19	26	23	1.98
49847691--49847785	46	2.1	46	100	0	190	52	6	20	21	1.68
49848902--49848962	5	12.0	5	76	13	54	1	24	0	73	0.92
49851636--49851692	23	2.5	23	91	0	96	63	15	0	21	1.31
49852943--49852981	19	2.1	19	85	9	53	48	5	7	38	1.54
49854016--49854091	41	1.9	40	84	10	102	35	0	3	60	1.15
49854938--49855004	16	4.3	15	70	10	55	1	23	1	73	1.00
49854925--49854973	16	3.1	16	80	8	55	2	24	2	71	1.07
49856274--49856462	36	5.0	36	82	12	234	30	20	12	37	1.89
49856313--49856503	82	2.3	82	96	0	346	28	21	12	37	1.90
49856231--49856467	118	2.0	118	92	0	393	29	21	13	35	1.91
49859712--49859756	22	2.0	22	83	8	56	40	4	0	55	1.20
49868857--49868899	10	4.1	10	82	8	50	72	4	20	2	1.14
49873165--49873208	23	1.9	23	86	9	63	36	13	9	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49875769--49875834	34	1.9	34	87	6	98	33	6	15	45	1.70
49875801--49875838	15	2.6	15	83	4	51	31	7	15	44	1.75
49878357--49878390	17	2.0	17	94	0	59	47	2	11	38	1.55
49878997--49879040	19	2.3	19	92	7	72	70	2	0	27	0.99
49880309--49880339	13	2.4	13	100	0	62	38	25	12	22	1.90
49880373--49880459	21	4.1	21	78	7	95	35	22	22	18	1.95
49880373--49880459	44	2.0	41	82	6	102	35	22	22	18	1.95
49880764--49880795	16	1.9	17	93	6	57	25	21	0	53	1.46
49881502--49881541	3	13.7	3	94	5	73	65	0	0	35	0.93
49881674--49881738	30	2.3	27	84	7	76	44	3	0	52	1.16
49881704--49881740	16	2.3	17	81	13	51	48	0	0	51	1.00
49882197--49882326	67	1.9	67	93	0	224	39	6	20	34	1.77
49882948--49883012	21	3.0	21	71	8	60	53	3	0	43	1.16
49886857--49886954	49	2.0	49	100	0	196	28	14	14	42	1.84
49890285--49890565	43	6.6	43	82	3	316	30	18	14	35	1.91
49890328--49890565	128	1.9	127	85	2	334	31	17	14	36	1.90
49900508--49900561	28	1.9	28	88	0	81	48	18	16	16	1.82
49901307--49901385	23	3.4	23	92	0	131	13	13	26	45	1.82
49901351--49901420	35	2.0	35	91	0	113	14	14	24	47	1.81
49901328--49901443	58	2.0	58	87	0	169	12	12	25	48	1.78
49901386--49901443	23	2.5	23	91	0	89	13	10	25	50	1.74
49901386--49901450	23	2.8	23	83	4	69	15	10	24	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49905045--49905086	17	2.5	17	84	3	50	61	0	4	33	1.17
49923416--49923454	21	1.9	21	89	5	62	33	25	0	41	1.56
49936986--49937037	9	6.0	9	80	6	54	0	36	3	59	1.16
49937780--49937815	7	5.1	7	100	0	72	41	0	44	13	1.44
49939431--49939467	16	2.2	17	90	4	58	29	0	0	70	0.88
49947641--49947667	6	4.5	6	100	0	54	85	0	0	14	0.61
49948533--49948736	44	4.7	43	70	11	157	26	19	19	33	1.96
49948506--49948824	129	2.5	129	88	1	460	27	17	20	33	1.96
49948888--49949404	44	11.8	44	69	7	248	29	22	18	30	1.97
49948844--49949404	218	2.6	219	86	2	770	29	22	17	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221