genome.fa.s26.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  142  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43600469--43601128	84	7.7	86	68	13	292	25	19	22	32	1.97
43601623--43601678	24	2.3	24	90	0	85	32	23	7	37	1.82
43602615--43602669	6	9.3	6	77	15	53	0	16	0	83	0.64
43602619--43602667	16	3.4	15	86	13	68	0	16	0	83	0.64
43602614--43602675	16	4.0	16	79	12	67	0	16	1	82	0.75
43606111--43606295	40	4.7	40	79	6	198	25	22	27	25	2.00
43606164--43606328	79	2.1	79	80	6	183	26	20	27	25	1.99
43608632--43608671	19	2.1	19	100	0	80	20	5	25	50	1.68
43611565--43611647	43	2.0	41	85	4	112	53	1	10	34	1.44
43611836--43611915	31	2.6	31	82	3	83	50	2	11	36	1.52
43623696--43623774	40	2.0	39	85	7	106	46	12	10	30	1.75
43623706--43623775	20	3.5	20	75	12	65	45	12	8	32	1.73
43623805--43623856	21	2.7	19	73	11	52	30	15	17	36	1.91
43627859--43627896	19	2.0	19	94	0	67	26	18	26	28	1.98
43637304--43637361	20	2.9	20	86	0	71	32	12	8	46	1.71
43649723--43649761	16	2.4	16	91	0	69	46	10	15	28	1.78
43660608--43660669	3	20.7	3	76	0	61	58	4	4	32	1.40
43662185--43662251	8	8.1	8	72	6	53	46	1	5	46	1.36
43662194--43662251	17	3.5	17	80	4	82	44	1	5	48	1.35
43662209--43662269	16	3.8	16	76	4	68	47	6	4	40	1.51
43662194--43662268	33	2.3	33	95	0	132	45	5	5	44	1.49
43663689--43663764	15	5.1	15	70	10	57	46	6	21	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43663685--43663764	30	2.7	30	90	0	124	47	6	21	25	1.73
43668354--43668429	15	5.1	15	67	10	57	46	6	22	25	1.76
43668350--43668429	30	2.7	30	94	0	133	47	6	22	23	1.74
43671478--43671517	20	2.0	20	90	9	64	25	7	2	65	1.32
43683330--43683372	22	1.9	22	85	4	59	58	6	6	27	1.50
43685319--43685678	114	3.2	113	79	6	363	25	21	25	27	1.99
43685592--43685765	73	2.4	72	78	8	181	24	22	26	27	2.00
43686043--43686086	18	2.4	18	100	0	88	22	0	50	27	1.50
43686914--43686974	32	2.0	32	87	6	90	52	8	1	37	1.41
43687207--43687252	21	2.2	21	96	0	83	15	4	36	43	1.66
43687236--43687306	31	2.4	29	85	4	88	21	1	39	38	1.62
43689008--43689119	16	7.0	16	70	20	83	31	14	18	35	1.91
43689012--43689119	28	3.4	34	76	18	140	32	13	17	36	1.89
43690510--43690817	88	3.6	87	80	12	409	37	15	5	40	1.72
43690475--43690729	83	3.0	83	76	15	322	37	15	8	38	1.79
43690475--43690817	171	2.0	171	98	0	668	37	15	7	39	1.76
43690681--43690854	47	3.8	47	79	11	227	37	15	3	43	1.64
43690891--43690999	49	2.2	49	85	6	150	46	15	0	37	1.46
43690941--43691046	17	6.4	17	70	20	82	46	12	0	41	1.41
43690940--43691046	9	11.9	9	69	20	64	45	13	0	41	1.43
43692654--43692724	21	3.4	21	86	0	106	32	18	47	1	1.57
43693071--43693194	43	2.9	42	80	4	131	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43693165--43693227	33	1.9	33	93	0	108	28	17	30	23	1.97
43699111--43699226	43	2.7	42	79	2	124	34	26	14	24	1.94
43703411--43703583	92	1.8	96	90	4	282	30	11	8	49	1.68
43705032--43705065	14	2.4	14	90	0	50	32	41	0	26	1.56
43705042--43705083	15	2.9	15	85	3	50	35	45	0	19	1.50
43705063--43705112	24	2.0	26	88	7	77	42	34	0	24	1.55
43705106--43705147	14	2.9	14	82	6	57	35	35	0	28	1.58
43705102--43705148	15	3.3	15	82	8	62	40	31	0	27	1.57
43705658--43705823	74	2.3	71	90	5	260	28	26	19	25	1.99
43705729--43705937	114	1.8	113	87	1	310	25	25	22	26	2.00
43705837--43706004	73	2.3	73	86	2	230	23	23	23	29	1.99
43705663--43706129	191	2.5	186	86	3	630	27	25	21	26	1.99
43705910--43706214	115	2.6	115	89	4	452	26	25	21	26	2.00
43706276--43706301	12	2.2	12	100	0	52	46	30	15	7	1.74
43709074--43709347	40	6.9	40	81	0	307	35	18	26	20	1.95
43709237--43709327	20	4.6	19	68	8	56	38	18	26	16	1.92
43709899--43709957	24	2.5	24	88	0	82	40	5	40	13	1.67
43712454--43712492	20	2.0	20	84	0	51	12	7	2	76	1.09
43714807--43714855	16	3.1	16	81	0	53	38	18	24	18	1.93
43716954--43716999	22	2.1	22	100	0	92	45	19	8	26	1.79
43719655--43720072	209	2.0	209	96	0	766	29	17	24	28	1.98
43736240--43736284	21	2.1	21	83	0	54	35	20	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43736391--43736525	71	1.9	71	90	0	216	31	28	14	25	1.94
43739394--43739431	11	3.5	11	92	0	58	0	15	2	81	0.80
43745191--43745245	17	3.2	16	78	19	58	80	10	7	1	0.99
43745211--43745239	15	1.9	15	100	0	58	82	10	6	0	0.83
43745192--43745224	10	3.4	10	95	4	59	84	6	9	0	0.76
43745255--43745290	16	2.2	16	90	5	54	83	0	16	0	0.65
43747421--43747697	50	5.5	50	74	4	261	33	24	19	22	1.97
43747389--43747748	100	3.6	100	87	2	515	31	23	20	23	1.98
43747389--43747747	50	7.1	50	72	3	236	32	23	20	23	1.98
43747673--43747822	74	2.0	75	92	1	248	34	22	20	23	1.97
43747765--43748071	50	6.1	51	75	6	272	33	23	18	24	1.96
43747573--43747922	174	2.0	175	88	2	517	33	22	19	24	1.97
43747748--43748055	100	3.1	100	88	0	483	35	23	17	23	1.96
43747472--43748021	274	2.0	276	89	0	834	33	23	19	23	1.97
43748047--43748096	25	2.0	25	88	0	73	34	20	20	26	1.96
43747949--43748196	125	2.0	125	88	1	372	35	22	17	24	1.96
43748072--43748252	50	3.6	49	73	4	166	33	20	19	26	1.97
43748072--43748252	100	1.8	100	87	2	274	33	20	19	26	1.97
43747847--43748252	225	1.8	225	83	3	539	33	21	18	25	1.97
43748072--43748279	100	2.1	100	83	5	260	33	20	19	25	1.97
43748980--43749005	11	2.4	11	100	0	52	0	7	7	84	0.77
43748980--43749018	17	2.4	16	82	4	51	0	12	5	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43758192--43758422	27	8.6	27	77	4	207	38	18	19	23	1.93
43758192--43758422	54	4.3	54	79	2	241	38	18	19	23	1.93
43758192--43758426	81	2.9	81	81	5	262	37	19	19	22	1.94
43758329--43758442	54	2.1	53	82	4	140	36	20	21	21	1.95
43758461--43758557	24	4.0	24	82	2	106	22	6	23	47	1.74
43758492--43758565	24	3.1	24	86	0	103	20	8	22	48	1.75
43758741--43758865	32	3.9	32	86	0	169	22	20	17	39	1.93
43763343--43763391	22	2.1	24	82	14	59	55	30	0	14	1.40
43764579--43764624	21	2.3	20	78	14	51	45	17	6	30	1.73
43768822--43768883	30	2.1	30	84	6	81	50	11	8	30	1.67
43778258--43778283	11	2.4	11	100	0	52	7	7	7	76	1.15
43782820--43782846	14	1.9	14	100	0	54	14	25	22	37	1.93
43784072--43784112	16	2.6	16	84	11	57	53	0	0	46	1.00
43784072--43784122	15	3.5	15	84	10	61	52	0	0	47	1.00
43784210--43784246	16	2.2	17	86	13	51	54	0	2	43	1.14
43784162--43784362	54	3.5	54	73	17	163	48	4	3	43	1.41
43784050--43784392	120	2.9	115	85	5	463	47	4	2	44	1.39
43784290--43784491	91	2.2	93	85	5	286	48	4	3	43	1.41
43784078--43784432	115	3.0	114	81	11	391	48	4	2	44	1.38
43787383--43787486	33	3.2	33	62	20	81	50	12	9	27	1.71
43787390--43787498	30	3.4	30	64	18	76	49	14	8	27	1.72
43787376--43787529	66	2.3	68	94	3	267	51	12	7	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43787622--43787687	33	2.0	33	93	0	114	36	9	15	39	1.79
43788572--43788637	25	2.6	26	95	4	118	22	19	10	46	1.80
43790460--43790509	25	2.0	25	100	0	100	28	12	40	20	1.87
43790572--43790678	33	2.9	33	79	18	115	55	12	28	3	1.54
43790572--43790657	43	2.0	43	97	0	163	60	9	26	3	1.44
43790610--43790678	33	2.1	33	94	0	120	53	13	28	4	1.58
43794352--43794425	36	2.1	36	100	0	148	44	18	8	28	1.78
43794851--43794903	27	2.0	27	85	7	72	30	26	15	28	1.96
43794893--43794957	28	2.3	28	83	0	76	27	15	18	38	1.91
43794918--43795006	28	3.2	28	79	6	90	26	19	15	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221