genome.fa.s26.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  118  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36165994--36166035	18	2.4	18	76	4	50	69	4	16	9	1.33
36168290--36168332	22	2.0	21	90	4	68	65	2	6	25	1.30
36169321--36169360	20	2.0	20	90	0	62	12	27	17	42	1.85
36173641--36173759	62	1.9	62	89	3	186	26	31	20	22	1.98
36176199--36176280	25	3.3	25	87	0	128	39	37	8	14	1.77
36191658--36191744	29	3.0	29	81	1	93	42	21	13	21	1.88
36198095--36198122	8	3.5	8	100	0	56	25	0	0	75	0.81
36198186--36198235	17	3.0	17	91	5	84	24	16	8	52	1.70
36198189--36198238	16	3.1	16	94	2	82	24	14	10	52	1.71
36200664--36200848	101	1.8	101	91	5	311	22	18	28	30	1.97
36200770--36200850	26	3.2	26	62	28	64	23	14	29	32	1.95
36200662--36200856	51	3.9	50	81	3	223	22	17	29	29	1.97
36205232--36205301	27	2.6	27	86	2	86	30	27	14	28	1.95
36208211--36208275	27	2.4	27	78	0	76	26	24	10	38	1.88
36208359--36208412	27	2.0	27	85	10	74	35	22	9	33	1.86
36208368--36208457	27	3.3	27	76	1	90	33	22	10	34	1.87
36210694--36210858	66	2.5	66	77	2	188	32	16	23	28	1.96
36216327--36216367	15	2.8	15	75	17	50	31	2	0	65	1.05
36229582--36229622	18	2.2	19	91	4	66	39	0	0	60	0.96
36229579--36229637	19	3.0	20	80	14	68	40	3	1	54	1.27
36231106--36231236	57	2.3	58	84	9	178	51	6	15	27	1.67
36231207--36231286	7	11.4	7	100	0	160	72	0	13	13	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36236680--36237079	44	9.1	44	89	2	581	29	24	19	26	1.98
36239301--36239336	6	5.7	6	93	6	54	0	13	0	86	0.58
36239301--36239336	7	5.4	7	96	3	58	0	13	0	86	0.58
36239301--36239336	13	2.8	12	88	12	54	0	13	0	86	0.58
36239348--36239396	20	2.6	18	79	20	55	10	6	12	71	1.30
36243862--36243912	9	5.7	9	77	9	50	58	3	7	29	1.44
36243849--36243930	27	2.8	29	76	14	80	54	7	8	29	1.57
36243873--36243924	12	4.1	12	74	13	50	57	0	9	32	1.31
36260461--36260518	28	2.1	28	100	0	116	36	13	29	20	1.91
36262608--36262681	27	2.7	27	91	0	121	40	24	14	20	1.90
36262644--36262718	37	2.0	37	94	0	132	40	30	12	17	1.86
36262681--36262915	27	8.8	27	82	3	278	43	20	16	19	1.88
36262621--36262745	64	2.0	63	88	1	187	40	24	13	20	1.89
36262681--36262915	53	4.4	53	82	7	255	43	20	16	19	1.88
36262681--36262914	80	2.9	80	85	3	292	44	20	16	19	1.87
36264243--36264564	27	12.0	27	80	4	321	21	19	19	39	1.92
36265261--36265320	29	2.0	31	87	6	88	48	11	30	10	1.72
36271277--36271454	27	6.6	27	82	3	196	26	15	28	29	1.96
36271278--36271433	82	1.9	81	86	3	224	26	16	28	28	1.97
36271274--36271454	82	2.2	81	82	2	220	27	16	27	29	1.97
36274057--36274110	28	1.9	28	92	0	90	27	22	22	27	1.99
36274223--36274292	26	2.7	26	95	0	131	38	22	22	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36274474--36274757	27	10.5	27	81	4	154	22	19	18	40	1.92
36274475--36274755	54	5.2	55	82	5	267	22	19	18	40	1.92
36274502--36274757	81	3.2	79	85	6	311	23	19	17	39	1.92
36280742--36280778	18	2.1	18	90	10	58	54	0	5	40	1.24
36287867--36287933	20	3.4	19	76	13	64	74	7	4	13	1.18
36295418--36295452	16	2.2	16	89	0	52	37	25	20	17	1.94
36296243--36296319	25	2.9	26	84	5	93	29	20	19	29	1.97
36301464--36301492	14	2.0	15	93	6	51	37	6	0	55	1.27
36314843--36314975	39	3.4	39	88	0	194	12	30	20	36	1.90
36314863--36314964	20	5.2	20	64	13	59	13	32	17	36	1.89
36314879--36314941	19	3.3	19	70	12	56	11	34	15	38	1.83
36320660--36320754	50	1.9	50	97	0	181	36	4	27	31	1.76
36326067--36326112	21	2.2	21	84	7	58	26	28	15	30	1.96
36326607--36326692	37	2.3	37	78	13	95	16	12	36	34	1.87
36332862--36332895	16	2.1	16	89	10	52	64	0	20	14	1.28
36333877--36333910	15	2.2	16	94	5	61	73	0	0	26	0.83
36334840--36334956	35	3.3	35	78	3	119	18	12	27	41	1.87
36349450--36349481	11	2.9	11	95	0	55	28	0	15	56	1.40
36349633--36349663	16	1.9	16	93	0	53	51	3	29	16	1.59
36356128--36356297	40	4.3	40	90	0	225	27	28	21	23	1.99
36356164--36356350	80	2.3	79	81	6	207	27	28	20	23	1.99
36356282--36356359	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36357995--36358055	30	2.0	30	100	0	122	45	13	21	19	1.84
36360076--36360169	41	2.3	41	86	0	125	39	24	15	20	1.92
36362927--36362973	20	2.3	20	85	0	67	29	36	12	21	1.91
36365086--36365120	17	2.0	18	88	5	54	17	31	31	20	1.95
36366888--36366920	14	2.3	15	89	5	50	18	0	0	81	0.68
36367434--36367474	13	3.2	13	86	10	57	36	7	7	48	1.59
36370275--36370930	220	3.0	220	94	0	1149	29	16	18	35	1.93
36374283--36374425	43	3.3	43	80	5	139	34	21	13	30	1.93
36389485--36389564	30	2.7	30	84	3	101	28	22	25	23	1.99
36389679--36389755	26	3.0	26	86	0	100	40	24	19	15	1.90
36389931--36390372	27	16.4	26	82	7	360	20	19	16	43	1.88
36389930--36390372	54	8.2	53	80	7	423	20	18	16	43	1.88
36389930--36390372	81	5.5	81	82	5	488	20	18	16	43	1.88
36393673--36393715	13	3.2	14	83	6	54	53	16	16	13	1.73
36394152--36394201	13	3.8	13	81	0	55	4	28	34	34	1.76
36396681--36396728	18	2.7	18	87	3	62	10	12	6	70	1.32
36397949--36397995	15	3.3	15	72	22	55	36	10	2	51	1.49
36397941--36397995	28	2.1	27	90	10	87	36	9	3	50	1.51
36397948--36398012	28	2.4	27	87	5	94	33	9	4	52	1.54
36398951--36399005	27	2.0	27	100	0	110	21	27	18	32	1.96
36412271--36412443	72	2.4	74	79	10	196	54	12	6	26	1.63
36412860--36412907	18	2.7	18	93	0	78	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36414737--36414769	16	2.0	17	88	5	50	24	24	12	39	1.89
36417570--36417613	21	2.1	21	95	0	79	36	13	27	22	1.92
36420091--36420125	11	3.2	11	95	0	61	48	28	22	0	1.51
36420179--36420208	14	2.1	14	93	0	51	56	20	23	0	1.42
36422972--36423072	20	4.9	20	74	7	78	43	19	23	12	1.86
36430151--36430216	33	2.0	33	100	0	132	36	21	15	27	1.93
36431924--36432045	54	2.3	54	78	2	129	19	27	27	26	1.99
36442246--36442271	3	8.7	3	100	0	52	65	0	0	34	0.93
36452105--36452168	16	4.2	15	75	15	60	81	4	14	0	0.85
36452109--36452159	26	2.0	26	84	7	68	82	5	11	0	0.83
36452109--36452168	22	2.7	22	80	12	77	81	5	13	0	0.84
36452576--36452702	42	3.0	41	86	4	173	22	18	23	35	1.96
36452921--36452978	3	19.3	3	100	0	116	34	32	0	32	1.58
36453340--36453637	146	2.0	147	88	3	440	43	5	9	42	1.58
36457912--36457989	23	3.4	22	87	8	111	43	38	3	14	1.63
36462521--36462636	61	1.9	58	81	8	135	47	3	6	43	1.45
36462621--36462678	25	2.3	26	82	11	68	48	5	1	44	1.35
36464948--36464990	18	2.6	16	77	7	50	25	18	4	51	1.66
36468310--36468354	22	2.2	20	92	8	72	37	4	4	53	1.41
36470179--36470219	19	2.1	20	86	4	57	31	9	2	56	1.45
36477193--36477233	19	2.1	19	86	4	55	31	9	0	58	1.31
36479478--36479524	18	2.5	19	79	10	60	29	0	4	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36479521--36479553	16	2.0	17	88	5	50	27	3	0	69	1.03
36479689--36479764	25	3.0	24	84	5	80	56	5	13	25	1.57
36480908--36480992	19	4.6	19	73	15	63	58	5	1	34	1.30
36480925--36481005	8	9.1	9	74	14	62	55	3	0	40	1.17
36487599--36487636	20	2.0	20	89	5	60	57	7	2	31	1.41
36488247--36488346	51	2.0	50	80	9	114	54	3	2	41	1.27
36489222--36489283	24	2.6	22	76	14	61	56	3	20	19	1.56
36491419--36491449	11	2.7	12	90	10	55	32	0	0	67	0.91
36491423--36491450	11	2.5	11	100	0	56	32	0	0	67	0.91
36491568--36491628	30	2.1	29	87	3	86	55	13	3	27	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221