genome.fa.s26.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  188  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55501487--55501689	53	3.9	53	74	14	181	46	3	8	40	1.53
55501569--55501665	48	2.0	48	85	0	131	47	3	10	39	1.53
55508746--55508812	15	4.3	16	81	9	77	64	1	2	31	1.18
55508768--55508814	3	15.7	3	100	0	94	65	0	0	34	0.93
55508817--55508864	25	1.9	25	83	8	62	52	6	10	31	1.60
55509792--55509817	4	6.5	4	100	0	52	73	0	0	26	0.84
55515677--55515718	15	2.8	16	75	10	52	42	4	0	52	1.22
55515708--55515767	28	2.1	28	96	0	111	28	16	5	50	1.66
55517162--55517217	26	2.1	28	80	12	73	66	1	8	23	1.30
55517164--55517217	27	2.1	26	86	6	74	66	1	9	22	1.30
55517305--55517341	17	2.2	17	90	0	56	62	2	0	35	1.10
55519110--55519421	44	6.8	44	73	11	232	26	25	19	28	1.99
55519166--55519569	144	2.8	144	88	0	569	26	23	20	29	1.99
55531413--55531664	45	5.6	45	94	2	427	33	15	23	27	1.95
55531413--55531664	91	2.8	90	94	3	429	33	15	23	27	1.95
55531413--55531664	136	1.9	134	93	3	434	33	15	23	27	1.95
55532880--55532918	17	2.3	17	90	0	60	64	2	0	33	1.08
55532997--55533090	22	4.2	22	67	14	57	57	3	6	32	1.40
55534293--55534325	14	2.3	15	89	5	50	9	0	15	75	1.03
55535889--55535935	24	2.0	24	82	0	58	63	0	31	4	1.13
55536588--55536634	23	2.1	22	84	7	60	42	17	2	38	1.61
55539514--55539736	41	5.4	41	89	0	338	28	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55548611--55548679	22	3.1	22	85	0	93	43	15	23	17	1.87
55551721--55551759	16	2.4	16	91	0	60	35	7	2	53	1.43
55552951--55553001	26	2.0	25	85	7	68	60	9	1	27	1.39
55553103--55553192	42	2.2	40	84	9	112	57	7	1	33	1.34
55560145--55560207	30	2.1	30	93	0	108	57	14	3	25	1.52
55560289--55560317	12	2.3	13	94	5	51	82	0	0	17	0.66
55564664--55564717	24	2.3	24	80	3	65	24	3	7	64	1.35
55564663--55564706	24	1.9	23	90	9	72	22	2	9	65	1.32
55572037--55572096	19	3.2	18	78	17	61	50	0	1	48	1.11
55572037--55572096	18	3.2	18	80	13	68	50	0	1	48	1.11
55573196--55573237	17	2.5	17	88	7	59	26	2	0	71	0.98
55576117--55576165	17	2.9	17	81	0	62	57	0	8	34	1.29
55577379--55577456	40	2.0	40	85	10	106	24	3	2	69	1.18
55578153--55578205	25	2.1	25	89	0	79	60	0	0	39	0.97
55578672--55578711	18	2.2	19	90	4	64	57	2	0	40	1.12
55578813--55578858	11	4.0	11	78	10	56	45	0	0	54	0.99
55580936--55580966	16	1.9	16	100	0	62	77	0	3	19	0.90
55586599--55586711	44	2.6	44	81	2	129	26	20	18	34	1.96
55586721--55587712	399	2.5	400	84	3	1250	27	24	16	31	1.96
55586748--55587881	89	12.8	89	87	2	1244	27	23	17	31	1.97
55589145--55589184	13	3.0	13	89	10	55	15	17	0	67	1.23
55589145--55589185	21	2.0	20	90	4	64	14	17	0	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55589145--55589185	6	6.0	7	78	16	50	14	17	0	68	1.22
55590443--55590479	9	4.1	9	85	0	56	27	10	16	45	1.80
55593289--55593333	19	2.4	19	85	7	56	44	8	20	26	1.80
55595559--55595596	4	9.0	4	88	11	58	73	0	2	23	0.95
55595559--55595595	18	2.1	17	95	5	65	75	0	2	21	0.92
55606593--55606641	25	1.9	26	87	4	73	61	2	8	28	1.36
55615214--55615286	35	2.1	34	90	7	112	49	8	2	39	1.47
55615233--55615286	16	3.0	19	68	15	60	46	9	3	40	1.54
55615198--55615387	93	2.1	91	90	5	294	47	6	4	40	1.51
55615432--55615472	16	2.6	16	92	0	64	43	4	4	46	1.46
55615446--55615507	22	2.7	23	87	5	81	48	1	1	48	1.21
55615964--55616033	3	23.3	3	97	0	131	32	1	0	65	1.01
55616097--55616168	26	2.8	26	82	12	78	37	5	1	55	1.32
55616097--55616168	24	2.7	28	82	16	82	37	5	1	55	1.32
55619774--55619861	25	3.5	24	75	9	70	35	21	23	19	1.96
55622177--55622214	10	3.7	10	86	13	51	71	7	21	0	1.11
55627473--55627716	72	3.4	72	87	1	337	26	22	26	24	2.00
55627616--55627987	119	3.2	114	89	4	539	26	23	25	25	2.00
55628237--55628266	15	2.0	15	93	0	51	20	0	43	36	1.52
55628555--55628595	21	2.0	20	85	4	55	19	0	41	39	1.52
55628566--55628648	29	2.9	29	74	15	91	22	0	39	37	1.55
55629209--55629780	254	2.3	243	87	4	797	45	12	12	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55629700--55629752	24	2.2	25	82	3	63	69	5	0	24	1.09
55632177--55632365	95	2.0	94	90	1	297	13	25	16	44	1.84
55633748--55633953	43	4.8	43	82	3	247	24	18	29	26	1.98
55633748--55633953	85	2.4	85	85	1	270	24	18	29	26	1.98
55639745--55639792	23	2.1	23	100	0	96	35	0	12	52	1.40
55644769--55644874	41	2.6	41	92	0	176	23	21	23	31	1.99
55647248--55647486	25	9.6	25	81	2	221	26	15	21	35	1.94
55647249--55647446	74	2.7	75	81	5	222	27	15	21	35	1.94
55647248--55647486	75	3.2	74	79	5	248	26	15	21	35	1.94
55647348--55647504	50	3.1	49	77	8	156	24	14	24	36	1.93
55655766--55656237	125	3.8	126	93	2	810	29	16	21	31	1.96
55658751--55659060	29	10.9	29	72	20	228	28	0	26	45	1.54
55658797--55658851	21	2.5	22	88	5	85	27	0	23	49	1.51
55658751--55659076	96	3.2	104	83	12	337	28	0	26	45	1.54
55658751--55659060	130	2.4	122	87	10	412	28	0	26	45	1.54
55658898--55659080	96	1.9	97	96	1	341	27	0	26	45	1.54
55658751--55659060	154	2.0	159	91	5	515	28	0	26	45	1.54
55659076--55659213	25	5.7	25	78	14	164	42	15	0	41	1.52
55659086--55659267	44	4.0	44	76	12	195	46	13	0	39	1.48
55660376--55660400	7	3.6	7	100	0	50	60	12	0	28	1.32
55661592--55661629	11	3.4	11	96	3	67	47	0	36	15	1.46
55665133--55665307	9	18.7	9	67	15	88	58	3	2	35	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55665233--55665307	29	2.6	29	81	10	84	58	4	2	34	1.31
55665882--55665948	28	2.3	29	82	12	86	28	1	1	68	1.07
55665882--55666197	9	33.9	9	67	15	137	31	2	3	62	1.24
55665901--55665944	20	2.2	20	88	8	63	25	2	2	70	1.10
55665885--55666000	8	13.0	8	72	16	54	29	2	2	65	1.19
55665983--55666066	30	2.9	28	75	10	78	34	0	5	59	1.22
55666043--55666112	28	2.6	27	82	17	83	30	0	2	67	1.05
55666032--55666113	37	2.2	38	77	12	91	34	0	2	63	1.08
55667003--55667054	16	3.2	16	94	0	86	28	0	36	34	1.58
55667035--55667129	45	2.1	44	88	1	136	34	5	27	32	1.79
55667267--55667321	25	2.2	25	84	9	69	52	1	0	45	1.11
55675926--55675969	3	15.0	3	95	4	81	34	0	0	65	0.93
55675930--55675969	20	2.0	20	100	0	80	35	0	0	65	0.93
55677909--55677944	17	2.1	17	89	0	54	16	16	22	44	1.86
55678392--55678431	19	2.0	20	85	4	55	22	20	10	47	1.79
55680295--55680335	20	2.0	20	90	9	66	14	14	4	65	1.42
55682504--55682845	132	2.6	132	88	1	490	30	18	22	28	1.97
55682854--55683288	44	9.8	44	72	9	254	31	17	23	28	1.97
55682851--55683294	89	5.0	89	91	1	656	31	16	23	27	1.97
55683436--55683928	44	11.2	44	67	12	251	30	19	23	26	1.98
55683345--55683998	132	5.0	131	88	1	950	30	18	23	27	1.98
55683981--55684175	44	4.4	45	81	1	223	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55683981--55684175	89	2.2	89	91	0	309	29	15	27	27	1.96
55688167--55688205	15	2.7	14	88	7	60	58	10	5	25	1.51
55688175--55688206	15	2.1	15	100	0	64	62	6	6	25	1.42
55688725--55688763	3	13.0	3	100	0	78	66	0	0	33	0.92
55698860--55698975	43	2.7	43	90	0	178	23	16	34	25	1.95
55699327--55699421	41	2.3	41	80	7	113	23	13	26	36	1.92
55699239--55699421	82	2.2	80	78	11	192	21	15	26	36	1.94
55700252--55700299	7	6.7	7	78	4	51	18	0	45	35	1.50
55700252--55700353	15	6.9	14	75	7	69	22	1	43	32	1.65
55700234--55700299	29	2.3	29	84	5	80	19	0	45	34	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221