genome.fa.s26.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  208  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61172174--61172291	63	1.9	62	84	10	161	33	0	11	54	1.37
61173457--61173490	17	2.0	17	94	0	59	5	2	5	85	0.83
61173492--61173560	28	2.5	28	86	6	104	47	1	10	40	1.46
61174325--61174522	40	5.0	38	72	17	100	0	34	0	65	0.97
61174387--61174487	10	10.5	10	70	16	79	0	33	0	65	1.00
61174394--61174504	18	6.1	18	74	15	95	0	32	0	66	0.98
61174431--61174504	14	5.1	14	72	22	55	0	31	0	68	0.89
61174425--61174504	34	2.8	28	75	24	85	0	32	0	67	0.91
61174436--61174507	10	6.6	10	73	17	54	0	31	0	68	0.90
61174465--61174507	22	1.9	23	85	4	61	0	30	0	69	0.88
61174326--61174508	28	6.2	30	68	19	93	0	32	0	66	0.96
61174324--61174521	42	5.0	40	72	17	105	0	33	0	65	0.97
61174556--61174623	27	2.5	27	92	0	109	19	26	26	27	1.99
61174556--61174634	27	2.9	27	87	7	99	16	26	26	30	1.97
61174688--61174755	28	2.5	28	90	7	104	47	1	10	41	1.47
61175603--61175665	23	2.8	22	73	15	56	42	1	1	53	1.19
61175631--61175670	15	2.5	16	84	8	55	35	2	0	62	1.09
61178534--61178562	13	2.1	14	93	6	51	31	6	13	48	1.69
61183655--61183692	17	2.2	17	100	0	76	47	15	5	31	1.68
61184350--61184631	94	3.0	94	82	5	334	48	8	14	27	1.73
61185805--61185860	27	2.2	24	78	12	60	33	5	7	53	1.51
61188129--61188167	10	3.9	10	82	0	51	82	0	15	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61188424--61188480	30	2.0	27	86	10	78	40	5	7	47	1.53
61188674--61188731	29	2.0	30	86	3	82	55	8	1	34	1.41
61190440--61190473	18	1.9	17	94	5	59	52	8	8	29	1.62
61194573--61194601	11	2.7	11	94	5	51	20	0	34	44	1.52
61194661--61194715	18	3.0	18	87	10	60	29	1	20	49	1.59
61194661--61194708	6	7.7	6	90	9	78	31	2	18	47	1.60
61197720--61197749	6	4.8	6	95	4	51	3	46	0	50	1.18
61198080--61198140	20	3.0	21	74	13	63	60	0	3	36	1.13
61198349--61198420	19	3.5	21	74	11	60	38	8	0	52	1.32
61198380--61198432	9	5.7	9	80	14	63	45	3	0	50	1.19
61198380--61198432	19	2.8	19	88	5	72	45	3	0	50	1.19
61203025--61203052	14	2.0	14	100	0	56	7	14	50	28	1.69
61208521--61208602	20	4.3	20	69	20	59	60	2	4	31	1.30
61213356--61213387	13	2.6	13	90	9	50	43	25	15	15	1.86
61215148--61215339	69	2.8	69	79	1	197	40	12	15	32	1.84
61219807--61219855	22	2.2	22	82	7	64	57	8	12	22	1.61
61219807--61219865	22	2.7	22	76	5	57	59	6	13	20	1.57
61220245--61220320	36	2.1	36	87	5	107	27	17	15	39	1.90
61220550--61220616	5	12.6	5	84	9	64	76	4	0	19	0.96
61220550--61220613	11	5.8	11	83	12	60	75	4	0	20	0.99
61226413--61226452	15	2.6	15	88	4	53	15	15	22	47	1.82
61228233--61228257	13	1.9	13	100	0	50	48	20	8	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61228443--61228572	41	3.2	41	83	6	140	28	23	19	28	1.98
61230189--61230237	25	2.0	25	88	8	73	51	2	0	46	1.12
61235847--61235898	24	2.2	24	89	0	77	55	9	1	32	1.43
61237817--61237868	24	2.2	24	89	0	77	55	9	1	32	1.43
61239902--61240099	9	23.3	9	76	11	204	31	1	22	44	1.62
61239914--61240099	34	5.5	34	86	5	259	30	1	22	45	1.62
61239902--61240099	25	7.8	27	82	7	204	31	1	22	44	1.62
61240853--61240897	12	4.0	12	86	13	69	71	0	0	28	0.87
61240856--61240898	22	2.0	21	95	4	77	74	0	0	25	0.82
61241154--61241207	18	2.9	19	81	15	76	57	18	16	7	1.62
61241151--61241212	18	3.3	17	80	15	61	54	16	19	9	1.68
61242990--61243046	18	3.2	18	92	0	87	28	24	15	31	1.96
61252539--61252787	9	30.3	9	74	17	222	28	1	22	47	1.59
61252539--61252650	25	4.5	25	84	7	122	27	0	24	47	1.58
61252555--61252795	25	9.8	25	83	8	186	29	1	21	47	1.59
61252539--61252795	16	16.2	16	74	18	168	29	1	22	47	1.59
61253648--61253690	18	2.4	17	81	14	50	55	11	20	11	1.66
61253675--61253730	14	4.0	15	77	11	57	66	8	19	5	1.39
61253720--61253762	19	2.3	19	100	0	86	60	18	11	9	1.57
61256487--61256594	15	7.2	15	69	12	78	27	21	7	43	1.79
61256477--61256600	30	4.1	30	91	1	194	27	23	6	42	1.78
61261127--61261234	15	7.2	15	67	12	78	25	22	7	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61261117--61261240	30	4.1	30	93	1	203	25	24	6	43	1.78
61263156--61263357	69	2.9	69	84	0	269	41	14	15	29	1.86
61277224--61277248	12	2.1	12	100	0	50	24	32	0	44	1.54
61283171--61283200	13	2.4	13	94	5	53	46	0	0	53	1.00
61283246--61283344	44	2.3	44	78	1	119	41	10	2	46	1.49
61293126--61293160	18	1.9	18	88	0	52	40	5	0	54	1.24
61298183--61298220	18	2.1	18	90	0	58	63	5	0	31	1.17
61298659--61298854	108	1.8	108	93	2	340	51	9	8	31	1.63
61304746--61304779	12	2.8	12	91	8	52	8	17	5	67	1.37
61307318--61307347	7	4.4	7	91	8	53	86	0	0	13	0.57
61307318--61307347	13	2.2	14	94	5	53	86	0	0	13	0.57
61307989--61308052	23	2.8	22	79	6	65	43	6	4	45	1.50
61319051--61319075	6	4.2	6	100	0	50	16	0	0	84	0.63
61321180--61321301	24	5.0	25	78	7	90	23	20	21	34	1.97
61321224--61321281	25	2.3	24	82	8	80	25	15	24	34	1.95
61324145--61324185	6	6.7	6	85	2	55	41	17	21	19	1.90
61324166--61324408	45	5.6	45	80	10	290	40	20	18	20	1.92
61324166--61324408	127	1.9	129	87	5	355	40	20	18	20	1.92
61324524--61324570	6	7.7	6	81	11	51	42	17	21	19	1.89
61324551--61324839	45	6.3	45	80	7	323	40	19	18	21	1.91
61324025--61324806	385	2.0	383	92	4	1311	37	20	17	24	1.94
61324729--61324755	6	4.5	6	100	0	54	48	14	18	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61324551--61324811	139	1.9	133	86	4	369	40	19	18	21	1.91
61329019--61329065	21	2.3	21	81	3	60	53	0	4	42	1.20
61331404--61331486	38	2.3	38	85	6	109	37	3	6	53	1.43
61331559--61331593	17	2.1	18	89	10	56	60	0	0	40	0.97
61337559--61337603	24	2.0	22	82	8	54	53	2	0	44	1.13
61344799--61344848	27	1.9	26	84	8	66	52	0	6	42	1.26
61354531--61354574	20	2.2	19	84	15	54	18	2	18	61	1.45
61357600--61357740	40	3.6	40	73	10	119	26	17	22	32	1.97
61365749--61365810	27	2.3	27	97	0	115	29	22	33	14	1.94
61365972--61366015	21	2.1	21	91	4	72	70	0	2	27	0.99
61366177--61366214	19	2.0	19	89	0	58	50	7	5	36	1.54
61366313--61366384	27	2.7	27	93	0	117	52	12	0	34	1.39
61366423--61366596	47	3.6	48	83	8	223	32	1	13	53	1.47
61366432--61366596	74	2.3	69	81	16	194	32	1	13	52	1.49
61366639--61366676	19	2.0	19	89	0	58	36	5	7	50	1.54
61366896--61366972	27	2.9	28	90	3	115	19	38	24	16	1.92
61367020--61367051	16	1.9	16	93	6	55	56	3	0	40	1.15
61373982--61374016	9	3.9	9	100	0	70	31	0	45	22	1.53
61384954--61385007	27	2.0	27	100	0	108	40	22	7	29	1.81
61384956--61385014	27	2.2	27	93	0	100	42	20	8	28	1.81
61393481--61393521	18	2.2	19	86	4	57	73	2	21	2	1.07
61399988--61400161	52	3.0	62	78	16	233	41	21	5	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61401858--61401920	13	4.9	13	77	14	69	80	1	12	4	0.93
61401858--61401921	6	10.2	6	78	18	60	79	1	14	4	0.96
61402807--61403470	88	7.5	88	78	5	527	27	16	26	29	1.97
61402812--61403425	132	4.7	132	91	0	944	27	15	26	29	1.96
61403433--61403841	88	4.6	91	66	11	218	26	20	22	30	1.98
61403390--61404099	134	5.3	134	96	0	1244	27	19	23	30	1.98
61404226--61404504	46	6.1	46	66	10	151	26	20	23	30	1.98
61404174--61404459	135	2.1	134	94	1	500	25	21	22	30	1.99
61413469--61413571	51	2.0	51	98	0	197	33	20	17	28	1.95
61415723--61415747	12	2.1	12	100	0	50	52	8	0	40	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221