genome.fa.s26.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  161  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48520101--48520193	21	4.4	21	86	0	123	5	45	16	33	1.70
48520101--48520213	21	5.4	21	85	0	100	5	42	16	35	1.71
48520184--48520330	66	2.2	66	86	4	199	12	28	18	40	1.86
48520204--48520353	66	2.3	66	86	4	205	14	24	19	42	1.88
48523295--48523367	25	2.7	25	81	10	74	34	1	16	47	1.55
48523350--48523814	9	52.9	9	67	19	107	39	2	13	44	1.56
48523354--48523501	34	4.5	31	70	18	84	37	1	18	43	1.59
48523488--48524183	34	21.2	32	73	17	313	42	1	11	44	1.50
48523284--48523814	16	30.2	18	65	21	114	38	2	14	45	1.56
48523641--48524249	34	19.2	34	71	19	437	41	2	11	44	1.52
48523674--48523837	22	7.7	22	67	24	75	38	3	11	46	1.56
48523488--48524249	128	6.1	130	77	14	569	41	1	11	45	1.52
48523739--48523841	22	4.9	22	68	21	76	38	1	11	47	1.51
48523860--48523918	17	3.2	17	70	25	57	42	0	6	50	1.28
48523886--48524102	56	3.6	56	78	18	263	43	1	10	44	1.47
48523764--48524008	94	2.7	90	90	6	397	42	1	10	45	1.47
48523979--48524148	90	1.9	94	92	5	294	41	1	11	46	1.47
48523984--48524182	90	2.2	87	83	12	222	42	1	11	45	1.46
48524169--48524221	16	3.3	16	79	12	56	32	1	22	43	1.64
48524172--48524218	23	2.0	23	95	0	85	31	2	21	44	1.64
48529028--48529412	41	9.4	41	83	5	429	34	25	23	15	1.94
48529028--48529412	82	4.7	82	87	2	479	34	25	23	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48545857--48545894	18	2.2	17	90	4	58	34	2	0	63	1.09
48545979--48546016	18	2.2	17	95	4	67	34	0	0	65	0.93
48545979--48546043	16	4.2	16	75	16	66	38	0	0	61	0.96
48546214--48546254	18	2.3	18	87	4	57	43	0	2	53	1.13
48546222--48546375	18	7.9	18	67	22	71	42	0	2	54	1.19
48545784--48546395	241	2.5	240	94	2	1079	41	1	4	53	1.27
48545784--48546395	122	5.1	120	96	1	1079	41	1	4	53	1.27
48546545--48546634	44	2.0	44	86	4	126	35	30	5	28	1.80
48546616--48546668	16	3.3	16	83	0	79	26	32	5	35	1.80
48547426--48547485	13	4.6	13	77	10	61	48	36	1	13	1.52
48549040--48549074	14	2.5	14	90	0	52	20	0	0	80	0.72
48549090--48549123	6	5.3	6	93	6	50	17	0	0	82	0.67
48549092--48549122	7	4.6	7	96	4	55	12	0	0	87	0.55
48550054--48550144	17	5.3	17	85	6	112	46	10	10	31	1.74
48550054--48550433	18	21.0	18	71	14	185	43	9	13	33	1.77
48550579--48550662	10	8.6	10	83	12	72	0	19	0	80	0.70
48550584--48550648	22	3.0	22	86	6	96	0	16	0	83	0.66
48550578--48550662	36	2.4	36	88	9	124	0	18	0	81	0.70
48550787--48550856	6	11.3	6	71	10	52	0	27	0	72	0.84
48550786--48550838	13	4.2	13	75	4	54	0	24	0	75	0.80
48550812--48550863	18	3.2	17	82	17	67	0	30	0	69	0.89
48551328--48551483	30	5.2	29	83	9	190	41	1	21	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48551328--48551483	59	2.6	60	85	6	219	41	1	21	36	1.61
48551652--48551857	78	2.6	76	86	6	288	36	22	16	23	1.94
48551826--48551894	35	2.0	35	100	0	138	37	17	15	28	1.91
48551748--48551967	110	2.0	113	90	4	349	36	20	16	27	1.93
48551670--48552049	188	2.0	190	88	3	570	36	20	16	25	1.94
48551861--48552407	78	7.1	76	86	5	690	34	21	17	26	1.95
48551638--48552117	266	1.8	266	87	5	727	35	21	17	25	1.95
48551861--48552407	157	3.5	153	83	8	689	34	21	17	26	1.95
48552374--48552436	29	2.2	29	100	0	126	20	36	22	20	1.95
48553327--48553390	30	2.1	30	88	0	92	6	4	4	84	0.87
48553334--48553390	10	5.7	10	82	0	69	5	3	5	85	0.80
48556902--48557227	46	7.6	45	81	15	406	34	14	21	29	1.93
48556938--48557138	36	5.0	36	76	21	204	35	15	19	29	1.93
48556902--48557227	82	3.9	82	87	8	469	34	14	21	29	1.93
48556902--48557227	128	2.6	127	78	19	406	34	14	21	29	1.93
48562304--48562342	20	2.0	20	84	0	51	38	10	12	38	1.78
48564710--48565020	47	6.6	47	91	1	487	32	8	30	28	1.87
48564870--48564945	22	3.3	22	64	10	62	30	10	31	27	1.90
48565139--48565217	37	2.1	37	88	0	113	24	17	31	26	1.97
48565982--48566206	18	12.2	18	73	10	161	44	9	14	31	1.77
48566035--48566078	22	2.0	22	81	0	52	38	6	11	43	1.67
48565996--48566132	37	3.7	35	71	15	98	43	8	14	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48565997--48566207	54	3.8	55	80	6	212	44	9	14	31	1.78
48566249--48566326	17	4.2	18	73	15	70	35	11	7	44	1.69
48566250--48566325	39	2.0	39	84	2	100	36	11	7	43	1.71
48566249--48566308	21	3.1	19	72	11	52	35	11	6	46	1.67
48566288--48566357	17	3.9	18	72	7	63	44	8	14	32	1.75
48566727--48566783	17	3.7	15	80	17	55	68	3	1	26	1.15
48566888--48566940	10	5.3	10	81	6	54	1	11	1	84	0.77
48566887--48566943	9	6.3	9	84	10	55	1	14	1	82	0.83
48566915--48566957	9	4.9	9	80	2	52	0	20	0	79	0.74
48566896--48566955	16	3.5	18	78	13	56	1	15	1	81	0.85
48566924--48566957	15	2.4	15	90	9	54	0	20	0	79	0.73
48567085--48567172	6	14.2	6	70	13	54	0	25	1	73	0.90
48567135--48567179	12	3.7	12	78	3	54	0	31	0	68	0.89
48567085--48567179	18	5.8	17	71	21	69	0	26	1	72	0.91
48567413--48567456	21	2.1	22	83	8	56	2	11	11	75	1.15
48567629--48567833	30	6.9	31	82	7	203	40	3	20	35	1.71
48567628--48567833	59	3.5	59	82	0	241	40	3	20	35	1.71
48585861--48585998	43	3.3	41	75	9	118	32	23	16	26	1.96
48585846--48585968	43	2.9	43	76	8	135	32	23	17	26	1.96
48585975--48586024	26	1.9	26	92	8	84	30	30	20	20	1.97
48592679--48592744	31	2.1	31	94	0	114	22	25	25	25	2.00
48593453--48593555	28	3.7	28	88	2	145	30	23	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48593925--48594339	81	5.1	81	79	6	394	20	17	20	42	1.90
48593934--48594332	27	14.8	27	79	4	324	20	18	20	41	1.91
48598999--48599085	43	2.0	43	95	0	156	36	33	13	16	1.88
48601695--48601743	25	2.0	25	83	0	62	34	18	12	34	1.88
48608627--48608661	18	1.9	18	88	0	52	25	14	11	48	1.77
48611276--48611362	43	2.0	43	86	4	122	44	19	5	29	1.74
48611318--48611394	39	2.0	39	82	10	95	44	19	2	33	1.65
48620298--48620349	18	3.1	17	81	8	61	44	5	0	50	1.26
48620325--48620354	15	1.9	16	93	6	53	43	0	0	56	0.99
48622755--48622891	40	3.5	40	89	3	206	39	21	19	18	1.93
48623402--48623444	14	3.0	14	86	3	50	30	2	30	37	1.70
48623588--48623639	7	7.6	7	82	8	63	15	0	51	32	1.43
48623588--48623652	14	4.7	14	75	3	60	18	0	47	33	1.49
48623614--48623677	21	3.0	21	78	13	60	25	0	37	37	1.56
48623766--48623793	7	4.0	7	100	0	56	14	0	57	28	1.38
48624572--48624604	12	2.8	12	86	13	50	15	0	3	81	0.80
48632746--48632785	20	2.0	20	85	5	53	22	30	0	47	1.52
48633733--48633763	5	6.2	5	92	0	53	19	19	16	45	1.86
48638587--48638657	37	1.9	37	91	0	115	49	2	1	46	1.25
48644870--48644912	7	6.3	7	89	5	61	9	0	41	48	1.35
48645041--48645261	96	2.3	96	85	4	295	41	2	17	38	1.64
48645294--48645582	126	2.3	126	82	5	350	34	14	20	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48649470--48649551	36	2.3	36	93	0	146	21	10	21	45	1.83
48652107--48652182	31	2.5	31	86	0	98	50	17	14	18	1.79
48655097--48655940	108	7.9	107	74	14	597	34	19	17	29	1.94
48655092--48656087	107	9.5	103	75	12	723	33	18	16	30	1.94
48656569--48656613	15	3.0	15	84	9	56	15	55	8	20	1.66
48656585--48656612	5	5.6	5	100	0	56	17	60	0	21	1.36
48660789--48660896	54	2.0	54	96	0	198	28	11	16	43	1.82
48660805--48660889	27	3.2	26	65	6	62	27	14	16	42	1.86
48663531--48663558	3	9.3	3	100	0	56	32	0	0	67	0.91
48663683--48663729	24	2.0	24	84	8	62	42	0	4	53	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221