genome.fa.s26.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  165  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49524573--49524610	3	12.7	3	100	0	76	68	0	0	31	0.90
49525826--49525851	3	8.7	3	100	0	52	69	0	0	30	0.89
49526249--49526291	19	2.3	18	84	4	50	20	0	6	72	1.08
49528294--49528342	17	2.8	18	84	6	64	75	6	4	14	1.14
49529594--49529722	37	3.5	37	95	0	231	25	20	17	36	1.94
49529686--49529888	46	4.3	46	88	7	289	29	21	13	35	1.91
49529729--49529888	52	3.2	52	90	7	242	29	21	12	36	1.90
49529686--49529888	98	2.1	99	91	0	327	29	21	13	35	1.91
49531410--49531510	49	2.1	49	90	0	157	32	29	13	23	1.94
49532699--49532844	37	4.0	37	90	5	226	24	21	16	36	1.94
49532808--49533010	46	4.3	46	88	7	289	29	21	13	35	1.91
49532851--49533010	52	3.2	52	90	7	242	29	21	12	36	1.90
49532808--49533010	98	2.1	99	91	0	327	29	21	13	35	1.91
49536620--49536821	99	2.0	99	99	0	395	19	4	33	43	1.71
49537165--49537858	100	6.9	100	86	1	899	24	19	22	34	1.97
49537150--49537858	50	14.2	50	71	2	465	24	19	22	33	1.97
49538042--49538166	44	2.8	44	82	0	178	30	28	15	26	1.96
49537847--49538161	88	3.6	88	70	11	243	27	24	19	27	1.99
49538127--49538661	88	6.1	89	69	11	194	25	24	20	29	1.99
49538393--49538511	44	2.7	45	80	7	143	28	26	16	27	1.97
49537996--49538661	352	1.9	351	91	0	1089	26	24	19	29	1.99
49540588--49540666	26	3.2	26	68	26	80	39	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49540588--49540681	48	2.0	48	91	0	152	38	1	7	53	1.36
49558551--49558603	21	2.7	20	83	11	65	71	1	3	22	1.12
49562248--49562285	12	2.9	13	80	11	51	0	7	10	81	0.87
49563375--49563437	26	2.4	26	82	10	76	33	3	4	58	1.35
49563375--49563446	27	2.7	27	76	21	71	30	4	4	61	1.34
49568658--49568715	25	2.3	24	82	8	62	46	0	3	50	1.18
49568658--49568783	47	2.6	49	70	11	114	43	2	3	50	1.34
49568890--49568931	15	2.7	16	82	14	52	45	0	2	52	1.13
49568881--49568922	15	2.9	15	82	10	52	47	0	0	52	1.00
49569147--49569214	16	4.2	16	96	0	127	38	35	0	26	1.57
49572443--49572494	12	3.4	17	73	26	62	23	7	7	61	1.49
49575091--49575250	37	4.7	33	72	14	121	43	4	2	50	1.35
49575865--49575922	30	1.9	30	92	0	98	24	32	31	12	1.91
49576953--49576990	5	7.6	5	93	0	67	42	21	0	36	1.53
49578423--49578774	42	8.3	43	81	6	333	29	27	15	26	1.96
49578423--49578766	86	4.0	83	82	6	377	30	27	15	26	1.96
49578873--49578941	34	2.1	33	83	8	86	55	2	1	40	1.24
49580869--49581438	253	2.2	253	91	1	919	28	18	15	37	1.92
49581196--49581591	213	1.9	214	92	0	668	26	15	15	41	1.88
49581671--49581703	12	2.6	13	90	4	50	42	0	0	57	0.98
49582116--49582150	14	2.5	14	80	0	52	54	22	8	14	1.67
49582220--49582269	21	2.4	21	80	6	57	48	40	0	12	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49582243--49582534	161	1.8	158	94	2	521	49	25	1	23	1.58
49582480--49582571	29	3.2	29	64	11	80	48	19	3	28	1.64
49582467--49582592	58	2.2	58	95	1	227	51	15	3	29	1.59
49582494--49582584	29	3.1	29	63	12	78	50	17	3	28	1.62
49582737--49582919	41	4.5	41	80	2	215	31	27	18	22	1.97
49582734--49582919	82	2.3	82	84	0	237	30	28	18	22	1.97
49592761--49592808	10	4.9	10	76	2	53	25	8	0	66	1.19
49594192--49594267	29	2.8	26	74	14	73	28	17	9	44	1.79
49601955--49601998	15	2.9	15	80	6	52	11	11	2	75	1.15
49601970--49602012	21	2.0	21	86	8	61	13	11	0	74	1.07
49603351--49603383	16	2.1	16	94	0	57	60	3	0	36	1.12
49610570--49610789	41	5.4	41	83	2	273	20	24	25	29	1.99
49611215--49611346	39	3.3	39	87	2	165	33	3	0	63	1.10
49612076--49612135	21	2.8	21	80	14	70	26	0	33	40	1.57
49612096--49612139	15	3.0	15	86	3	54	25	0	36	38	1.56
49612890--49612950	10	5.8	10	79	14	61	54	0	4	40	1.22
49613206--49613255	19	2.6	19	79	17	50	42	8	0	50	1.32
49617838--49618027	43	4.4	44	80	4	199	26	16	26	31	1.96
49617822--49618027	87	2.4	86	78	9	231	25	15	26	33	1.95
49618188--49618229	9	4.5	10	77	17	54	7	9	11	71	1.31
49627042--49627091	17	2.7	20	78	18	70	10	0	44	46	1.37
49631681--49631730	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49635616--49635659	19	2.4	19	96	3	81	11	20	11	56	1.64
49635999--49636042	20	2.2	20	88	4	63	4	22	9	63	1.42
49636128--49636158	16	1.9	16	100	0	62	22	6	12	58	1.58
49636187--49636212	10	2.6	10	100	0	52	30	0	19	50	1.48
49639430--49639697	129	2.1	129	95	0	482	41	6	10	41	1.65
49639779--49639813	18	1.9	19	88	11	56	31	0	0	68	0.90
49639794--49639818	13	1.9	13	100	0	50	36	0	0	64	0.94
49639799--49639841	21	2.1	21	86	4	61	41	0	0	58	0.98
49639764--49639841	21	3.7	22	72	18	58	39	0	1	58	1.06
49641252--49642076	298	2.8	299	79	7	782	40	9	12	37	1.75
49646648--49646705	18	3.3	18	79	13	59	41	8	13	36	1.76
49653459--49653483	3	8.3	3	100	0	50	0	32	0	68	0.90
49654568--49654609	19	2.2	19	95	0	75	21	19	47	11	1.81
49655021--49655054	16	2.2	15	89	5	50	55	0	0	44	0.99
49666035--49666074	21	1.9	21	100	0	80	47	10	17	25	1.78
49671611--49671663	27	2.0	27	85	7	72	39	1	3	54	1.29
49672096--49672134	16	2.4	16	91	0	60	38	10	25	25	1.87
49672116--49672208	45	2.1	44	88	6	134	34	3	24	37	1.72
49672317--49672454	57	2.4	56	80	9	134	52	4	0	42	1.26
49672443--49672474	10	3.2	10	90	0	55	62	0	0	37	0.95
49673757--49673832	38	2.0	38	94	0	134	44	19	17	18	1.87
49675116--49675180	12	6.3	11	76	21	61	53	0	3	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49675116--49675145	11	2.6	12	94	5	53	53	0	3	43	1.17
49675201--49675226	11	2.4	11	100	0	52	53	0	7	38	1.30
49676916--49677070	41	3.8	41	91	0	229	17	21	29	32	1.96
49677398--49677435	14	2.7	14	91	0	67	26	0	28	44	1.54
49677522--49677586	14	4.6	14	84	3	78	27	0	36	35	1.57
49677522--49677586	28	2.3	28	86	5	87	27	0	36	35	1.57
49677603--49677746	74	1.9	77	85	4	204	29	1	22	45	1.61
49677736--49677793	7	8.3	7	73	7	55	17	0	48	34	1.47
49677734--49677802	14	4.9	14	77	8	59	15	0	47	36	1.46
49677749--49677793	21	2.1	21	87	0	63	15	0	51	33	1.44
49681215--49681275	28	2.2	28	85	5	79	32	9	24	32	1.88
49681284--49681310	5	5.4	5	100	0	54	18	0	0	81	0.69
49682107--49682336	43	5.3	43	86	0	280	19	16	31	32	1.94
49682400--49682441	22	1.9	22	95	0	75	40	28	21	9	1.84
49684388--49684432	19	2.4	19	88	7	65	31	22	8	37	1.85
49687170--49687231	9	7.0	9	75	3	63	80	12	4	1	0.94
49688690--49688747	24	2.4	24	88	0	89	32	10	25	31	1.89
49689050--49689842	100	7.9	100	93	0	1255	29	21	23	24	1.99
49689898--49690347	82	5.5	82	88	5	544	30	25	20	23	1.98
49689907--49690347	206	2.2	204	93	2	751	30	25	20	23	1.99
49690679--49690719	19	2.2	19	86	8	57	58	34	0	7	1.26
49692312--49692403	43	2.1	43	89	0	139	38	20	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49692709--49692758	21	2.4	21	76	6	57	4	46	16	34	1.65
49698266--49698370	25	4.2	25	76	11	106	32	2	19	45	1.65
49698277--49698527	9	28.8	9	70	12	157	31	3	20	45	1.67
49698672--49698807	53	2.6	53	82	4	184	44	5	11	38	1.62
49698775--49698826	13	4.0	13	92	0	77	42	1	9	46	1.47
49698896--49699507	100	6.1	100	95	1	1091	48	4	6	40	1.49
49698896--49699511	202	3.1	202	95	0	1094	48	4	6	40	1.49
49699908--49699987	7	11.3	7	83	2	106	70	12	13	3	1.31
49699991--49700034	18	2.4	19	84	3	54	56	13	15	13	1.67
49700789--49700813	10	2.5	10	100	0	50	32	8	12	48	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221