genome.fa.s26.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  126  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38796604--38796628	11	2.3	11	100	0	50	48	52	0	0	1.00
38802481--38802509	10	3.0	10	95	5	51	31	37	0	31	1.58
38811500--38811540	21	2.0	21	95	0	73	39	14	12	34	1.84
38816919--38816951	15	2.3	15	94	5	59	33	6	0	60	1.21
38825360--38825407	25	2.0	25	88	12	73	16	10	2	70	1.24
38825387--38825421	12	3.0	12	87	4	54	28	8	0	62	1.24
38825785--38825983	100	2.0	103	87	3	296	31	8	21	39	1.83
38828434--38828502	33	2.2	31	89	10	104	30	21	24	23	1.99
38835254--38835302	17	2.8	17	75	3	53	16	26	36	20	1.93
38835855--38835920	32	2.1	31	86	13	91	30	19	25	24	1.98
38841804--38841836	13	2.4	14	85	5	50	69	0	3	27	1.03
38847221--38847293	24	3.0	24	80	11	85	24	20	17	36	1.94
38847222--38847333	25	4.5	26	76	19	78	25	23	20	31	1.98
38847219--38847333	50	2.3	49	80	7	142	25	23	20	31	1.98
38847273--38847337	25	2.6	25	81	13	80	24	26	21	27	1.99
38855718--38855784	25	2.7	25	80	0	89	26	20	22	29	1.99
38864274--38864394	41	3.0	41	83	2	145	34	25	19	19	1.96
38865845--38866043	29	6.8	29	82	0	209	34	15	26	24	1.94
38869376--38869511	40	3.4	40	89	0	191	26	13	27	31	1.94
38871498--38871651	45	3.4	45	79	6	134	22	23	14	40	1.90
38871666--38871739	24	3.2	24	66	14	66	24	16	14	44	1.85
38877225--38877262	16	2.4	16	86	0	58	31	28	21	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38877531--38877653	45	2.7	45	87	0	174	25	21	15	38	1.92
38877621--38877740	45	2.7	45	83	5	136	23	18	15	43	1.87
38879982--38880048	34	1.9	35	90	3	109	46	10	8	34	1.70
38881511--38881580	29	2.3	30	82	4	79	44	14	11	30	1.80
38887367--38887514	74	2.0	74	89	1	224	41	14	8	36	1.75
38889971--38890004	6	5.7	6	92	0	59	17	26	0	55	1.42
38889971--38890007	12	3.1	12	92	0	65	18	27	0	54	1.44
38898835--38898920	43	2.0	43	90	0	136	52	3	24	19	1.62
38898893--38898943	18	2.7	19	87	6	68	52	1	25	19	1.56
38898908--38898962	27	2.0	27	82	6	67	49	1	25	23	1.60
38898895--38898943	19	2.6	19	87	6	64	53	2	24	20	1.56
38899754--38899893	54	2.6	54	81	1	172	25	25	33	15	1.95
38908250--38908279	11	2.7	11	100	0	60	33	10	10	46	1.71
38914794--38914918	28	4.5	28	90	0	187	32	26	19	21	1.97
38915035--38915114	26	3.1	26	83	3	108	41	23	15	20	1.89
38915034--38915110	25	3.0	25	83	3	100	42	24	14	18	1.87
38915261--38915669	27	15.3	27	79	5	298	17	18	21	42	1.90
38918118--38918144	14	1.9	14	100	0	54	55	0	7	37	1.28
38919371--38919505	11	12.0	11	65	23	52	42	3	2	51	1.35
38920980--38921123	43	3.3	43	86	1	182	30	22	16	29	1.96
38921093--38921280	48	3.9	48	81	1	162	32	18	16	32	1.93
38921093--38921276	96	1.9	96	83	2	235	32	17	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38921272--38921366	30	3.1	30	76	7	109	48	15	5	30	1.67
38930763--38930791	9	3.0	10	90	10	51	58	0	20	20	1.39
38931039--38931087	25	2.0	25	87	0	71	38	12	12	36	1.80
38931510--38931558	24	2.0	24	96	0	89	42	10	16	30	1.81
38936035--38936124	25	3.6	25	79	7	94	32	20	25	22	1.98
38948209--38948351	70	2.0	70	98	0	277	47	4	1	46	1.32
38948218--38948329	35	3.2	35	68	14	113	43	6	0	49	1.34
38950966--38951026	19	3.1	19	81	9	70	49	0	3	47	1.18
38950973--38951026	21	2.7	20	82	8	65	50	0	3	46	1.19
38953841--38953909	24	2.9	24	82	8	79	53	7	4	34	1.48
38956334--38956390	29	2.0	29	93	6	98	36	14	38	10	1.80
38956903--38956991	39	2.3	39	84	2	124	17	3	28	50	1.62
38956970--38956999	13	2.3	13	100	0	60	16	0	43	40	1.48
38960329--38960500	79	2.2	79	81	3	202	26	20	27	25	1.99
38960276--38960498	40	5.6	39	80	8	191	26	21	26	25	1.99
38967285--38967467	39	4.6	39	83	5	183	26	20	28	24	1.99
38967238--38967494	40	6.5	40	79	8	224	26	21	27	24	1.99
38967291--38967467	79	2.2	79	83	4	214	25	21	28	24	1.99
38967291--38967494	79	2.6	80	79	5	211	25	22	27	24	1.99
38971643--38971695	25	2.3	23	78	12	63	54	7	5	32	1.52
38971660--38971703	23	1.9	23	81	9	54	50	6	4	38	1.50
38971728--38971759	16	1.9	17	93	6	57	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38972217--38972293	19	3.8	19	82	6	82	38	16	6	37	1.75
38972217--38972293	38	1.9	40	84	10	104	38	16	6	37	1.75
38972835--38972960	45	2.8	44	83	2	153	24	23	21	30	1.99
38972845--38972960	44	2.6	44	83	6	135	25	22	22	29	1.99
38973258--38973353	44	2.2	44	81	3	104	29	22	20	27	1.99
38973357--38974640	88	14.6	88	84	2	1477	20	23	27	28	1.99
38973373--38974309	133	7.1	132	71	6	712	20	23	27	28	1.99
38973460--38974125	221	3.0	221	78	6	842	20	23	27	29	1.99
38973526--38974195	221	3.0	219	78	3	795	20	23	27	28	1.99
38974300--38974441	43	3.3	43	65	3	113	17	26	28	27	1.98
38976816--38976882	26	2.5	26	80	7	73	56	5	16	20	1.61
38981134--38981173	19	2.2	18	90	4	62	65	0	5	30	1.14
38981612--38981688	19	3.7	21	76	13	68	41	15	5	37	1.70
38981612--38981669	22	2.6	22	81	7	64	41	17	5	36	1.72
38981648--38981701	19	2.8	19	88	0	90	37	14	9	38	1.79
38983951--38983977	7	3.9	7	100	0	54	59	0	11	29	1.32
38984716--38984770	3	18.0	3	81	10	58	65	0	3	30	1.10
38985769--38985839	20	3.5	20	84	0	97	5	22	25	46	1.73
38994468--38994513	20	2.3	20	88	0	65	23	23	32	19	1.97
38995295--38995356	24	2.6	24	86	0	79	37	1	25	35	1.66
38998230--38998254	13	1.9	13	100	0	50	36	0	32	32	1.58
38998440--38998484	22	2.0	22	91	0	72	46	22	2	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38999543--38999585	18	2.3	19	84	4	52	32	20	32	13	1.92
39000753--39000829	13	5.9	13	87	0	118	24	9	27	38	1.85
39008640--39008794	57	2.7	55	84	10	163	50	5	2	41	1.40
39008667--39008794	57	2.2	58	89	6	190	50	4	3	41	1.39
39011423--39011478	27	2.1	27	96	0	103	33	8	14	42	1.77
39013019--39013223	40	5.1	40	82	2	250	22	28	17	31	1.97
39013019--39013240	120	1.9	119	86	6	324	21	28	17	32	1.96
39019880--39020073	40	4.9	40	81	1	212	20	26	18	34	1.96
39019882--39020073	79	2.4	79	85	2	242	20	26	18	34	1.96
39024223--39024260	6	6.3	6	82	11	51	0	50	2	47	1.15
39025396--39025507	56	2.0	56	100	0	224	44	7	14	33	1.72
39025607--39025659	22	2.5	20	72	19	54	64	0	0	35	0.94
39028793--39029269	237	2.0	234	83	7	590	43	7	9	39	1.65
39030783--39030814	2	16.0	2	100	0	64	50	0	50	0	1.00
39032777--39032833	13	4.6	13	74	12	57	43	0	0	56	0.99
39032781--39032827	12	3.9	12	81	8	60	36	0	0	63	0.94
39032782--39032827	11	3.9	11	81	13	56	34	0	0	65	0.93
39034445--39034704	40	6.1	41	70	21	148	30	0	13	55	1.42
39034428--39034613	101	1.9	100	90	3	302	29	0	13	57	1.37
39034447--39034635	41	4.7	40	73	17	167	29	0	13	57	1.36
39034447--39034512	22	3.2	22	81	14	86	27	0	10	62	1.28
39034697--39034781	25	3.3	24	71	22	66	35	0	10	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39034843--39034923	37	2.2	37	93	2	135	53	1	2	43	1.22
39034960--39035001	16	2.7	15	85	7	57	38	2	2	57	1.25
39038564--39038867	47	6.4	47	90	3	416	33	9	30	26	1.88
39044403--39044468	27	2.4	27	80	5	80	21	36	22	19	1.95
39048897--39048945	20	2.7	18	77	22	57	51	4	2	42	1.32
39055902--39055936	18	1.9	18	88	11	54	28	0	8	62	1.24
39055944--39055990	16	2.8	16	78	12	51	31	4	4	59	1.36
39056170--39056211	16	2.7	16	85	3	59	35	0	4	59	1.19
39056170--39056211	14	3.1	13	78	21	50	35	0	4	59	1.19
39056256--39056308	21	2.5	21	81	6	54	32	1	9	56	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221