genome.fa.s26.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  35  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9620337--9620383	10	4.7	10	83	0	58	0	19	0	80	0.70
9620331--9620378	20	2.3	22	85	7	64	0	22	0	77	0.78
9620676--9620720	13	3.8	12	77	22	51	0	20	0	80	0.72
9620667--9620714	22	2.2	21	85	10	62	4	14	0	81	0.84
9620677--9620719	22	2.0	22	90	9	70	0	20	0	79	0.74
9620846--9620897	26	2.0	26	81	7	61	5	38	0	55	1.24
9621027--9621074	12	3.7	12	76	17	51	4	4	12	79	1.02
9621242--9621296	22	2.5	22	76	2	58	10	21	1	65	1.33
9621570--9621602	16	2.1	16	94	0	57	21	0	6	72	1.05
9621932--9622331	79	5.1	79	83	6	467	37	19	15	28	1.92
9621932--9622322	160	2.5	154	82	7	452	36	19	15	28	1.92
9633870--9633935	30	2.2	30	94	0	114	18	4	36	40	1.71
9633885--9633941	18	3.4	18	66	28	54	17	1	36	43	1.60
9635331--9635489	18	9.0	18	71	15	82	47	12	12	27	1.77
9635331--9635441	35	3.2	34	80	11	111	46	11	11	29	1.76
9635334--9635432	17	5.7	17	75	13	85	47	13	13	26	1.79
9635386--9635458	17	4.0	18	75	10	60	46	12	6	34	1.68
9635386--9635494	53	2.0	55	84	7	143	44	12	10	32	1.76
9635616--9635669	28	1.9	28	88	7	83	40	7	9	42	1.65
9636086--9636130	6	7.3	6	80	14	56	0	17	0	82	0.68
9636251--9636318	26	2.7	25	80	13	70	2	30	0	66	1.07
9636650--9636704	22	2.5	22	76	2	58	10	21	1	65	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9636978--9637012	17	2.1	17	94	0	61	20	0	5	74	1.02
9637646--9638038	194	2.0	194	87	3	569	28	23	23	24	2.00
9642097--9642182	13	6.5	14	77	10	58	36	17	2	44	1.62
9642097--9642182	26	3.3	26	75	4	84	36	17	2	44	1.62
9642097--9642182	39	2.2	39	87	2	118	36	17	2	44	1.62
9642162--9642205	13	3.4	13	77	0	52	29	22	0	47	1.51
9648442--9648476	16	2.1	17	89	5	54	62	2	5	28	1.32
9653871--9653932	27	2.2	29	83	11	76	62	1	3	32	1.20
9654271--9654310	16	2.5	17	84	12	57	70	2	0	27	1.01
9660357--9660391	17	2.1	17	89	5	54	48	5	14	31	1.67
9661045--9661370	41	8.0	41	87	4	435	21	17	27	33	1.96
9665557--9665596	20	2.0	20	90	0	62	47	0	5	47	1.24
9665677--9665714	19	2.0	19	100	0	76	47	15	10	26	1.78
9665922--9665953	14	2.3	14	100	0	64	25	9	15	50	1.74
9666681--9666725	23	2.0	23	100	0	90	51	8	4	35	1.54
9669342--9669381	21	1.9	21	89	0	62	65	5	7	22	1.38
9680811--9680866	22	2.6	21	78	10	60	57	1	0	41	1.09
9683636--9683660	4	6.2	4	100	0	50	0	24	0	76	0.80
9686949--9686986	18	2.1	19	90	5	60	52	5	21	21	1.66
9702007--9702059	13	4.1	13	85	0	79	28	7	28	35	1.84
9702330--9702395	33	2.0	34	84	3	89	43	0	3	53	1.16
9702354--9702394	20	2.0	21	85	4	57	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9702511--9702546	13	2.8	13	91	4	56	47	16	0	36	1.47
9713835--9713878	15	2.9	15	79	0	52	47	31	0	20	1.50
9714291--9714329	15	2.7	14	80	7	51	48	12	2	35	1.55
9715086--9715157	31	2.3	32	77	20	82	29	9	16	44	1.80
9721114--9721151	6	6.3	6	96	0	67	28	15	34	21	1.94
9733613--9733641	15	1.9	15	100	0	58	65	6	0	27	1.18
9745479--9745534	19	3.1	18	72	23	55	39	1	3	55	1.28
9745648--9745700	21	2.5	21	90	0	79	30	37	9	22	1.86
9749380--9749423	21	2.2	20	91	4	70	43	9	27	20	1.82
9754809--9754978	40	4.2	40	76	8	157	33	21	21	23	1.97
9755128--9755217	7	12.6	7	75	9	74	22	0	27	50	1.50
9755128--9755224	36	2.7	36	83	0	95	22	0	28	48	1.51
9755129--9755211	29	2.9	28	81	3	94	22	0	27	49	1.50
9755128--9755245	7	16.7	7	76	6	60	21	0	33	45	1.52
9755208--9755245	20	1.9	20	94	0	67	18	0	44	36	1.50
9755966--9756028	21	3.2	20	74	24	55	42	19	1	36	1.61
9757442--9757485	23	1.9	22	82	17	54	38	22	0	38	1.55
9757530--9757623	45	2.1	45	89	0	143	29	23	20	26	1.99
9757620--9757756	51	2.7	51	81	3	161	29	28	17	24	1.97
9761142--9761272	47	2.8	47	83	0	154	26	12	9	50	1.72
9761272--9761363	47	1.9	48	86	4	132	25	9	10	54	1.65
9761344--9761407	30	2.1	30	88	0	92	26	9	12	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9761298--9761449	77	2.0	77	86	2	216	23	10	13	52	1.71
9761374--9761466	47	2.0	47	86	0	132	25	8	12	52	1.68
9761445--9761487	21	2.0	21	90	0	68	25	6	16	51	1.69
9761400--9761534	68	2.0	68	92	0	225	26	8	14	51	1.70
9762763--9762865	43	2.4	42	81	1	134	25	18	24	32	1.97
9769078--9769138	32	1.9	32	90	9	99	34	4	11	49	1.61
9770934--9770979	14	3.4	14	84	3	58	30	2	10	56	1.46
9774975--9775010	16	2.2	17	90	9	58	66	0	19	13	1.24
9774993--9775031	20	2.0	19	90	5	60	64	0	25	10	1.25
9776303--9778845	132	19.3	132	88	1	3478	29	18	23	28	1.98
9778108--9778302	44	4.5	43	66	6	131	31	18	25	25	1.98
9778822--9778919	44	2.2	45	85	1	126	33	14	24	27	1.94
9781028--9781073	14	3.4	14	84	3	58	30	2	10	56	1.46
9784468--9784497	14	2.1	14	93	0	51	40	6	6	46	1.56
9785024--9785078	3	18.3	3	100	0	110	65	0	0	34	0.93
9785567--9785626	13	4.4	14	70	17	54	20	5	33	41	1.74
9787556--9787601	21	2.3	20	85	10	60	36	0	2	60	1.09
9792530--9792572	15	2.7	16	82	7	52	67	2	2	27	1.15
9794282--9794332	21	2.4	22	80	9	61	11	3	11	72	1.25
9794296--9794338	21	2.0	21	81	4	50	13	9	9	67	1.42
9799687--9799749	12	4.8	12	77	22	65	47	7	0	44	1.32
9799687--9799749	14	4.8	13	77	14	67	47	7	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9799687--9799749	26	2.4	24	82	15	72	47	7	0	44	1.32
9799684--9799738	11	4.4	12	81	16	51	50	7	0	41	1.30
9799826--9799882	30	1.9	30	92	7	98	29	12	15	42	1.84
9807546--9807776	44	5.2	44	89	1	331	25	24	22	27	2.00
9818281--9818313	17	1.9	17	93	0	57	18	0	6	75	1.00
9818281--9818313	9	3.8	9	88	8	50	18	0	6	75	1.00
9818391--9818430	6	6.5	6	82	5	53	80	2	15	2	0.93
9822282--9822328	24	2.0	24	91	0	76	14	21	25	38	1.92
9822862--9822888	7	3.9	7	100	0	54	85	0	0	14	0.61
9824915--9824952	20	1.9	20	88	0	58	47	0	5	47	1.24
9825078--9825108	16	2.0	16	93	6	55	41	0	0	58	0.98
9831049--9831107	31	1.9	31	86	10	86	33	3	8	54	1.48
9835082--9835112	16	1.9	16	93	0	53	16	9	3	70	1.26
9836761--9836813	20	2.8	19	76	18	58	37	1	1	58	1.20
9838927--9838974	24	2.0	24	95	0	87	27	25	6	41	1.79
9845865--9845950	21	4.1	21	72	1	66	47	13	19	18	1.82
9845819--9845950	42	3.2	41	78	5	131	45	15	21	17	1.85
9846022--9846069	24	2.0	24	91	0	78	25	27	4	43	1.72
9850452--9850517	26	2.5	26	92	0	114	21	24	27	27	1.99
9850509--9850570	25	2.5	25	84	5	81	24	16	24	35	1.95
9857079--9857139	28	2.1	29	84	3	79	21	19	21	37	1.94
9857079--9857157	29	2.8	29	82	5	81	25	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9869953--9869994	20	2.0	20	86	4	57	42	0	2	54	1.13
9870575--9870693	60	2.0	60	91	0	193	32	0	13	52	1.46
9873038--9873108	33	2.2	33	82	5	81	14	42	11	32	1.81
9876661--9877049	192	2.0	196	89	5	594	41	10	13	34	1.79
9882097--9882150	7	7.7	7	91	0	90	27	12	0	59	1.34
9882084--9882157	21	3.5	21	81	0	76	28	21	0	50	1.49
9882175--9882209	15	2.2	16	90	5	54	14	8	8	68	1.38
9883880--9884095	54	3.8	54	74	10	189	30	30	7	31	1.86
9883929--9884132	63	3.4	62	75	13	219	31	32	8	27	1.86
9883858--9884122	117	2.3	117	94	0	467	31	32	8	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221