genome.fa.s26.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  158  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47843364--47843400	18	2.1	18	94	0	65	32	37	13	16	1.87
47843383--47843572	50	3.8	50	88	0	263	22	31	21	25	1.98
47845018--47845050	17	1.9	17	93	0	57	15	15	39	30	1.88
47845075--47845117	22	2.0	22	95	0	77	9	27	18	44	1.80
47847000--47847265	103	2.6	104	91	0	426	19	20	30	29	1.97
47851189--47851269	25	3.2	25	83	0	99	37	22	22	18	1.95
47851206--47851280	25	3.0	25	84	0	96	33	20	28	18	1.96
47867799--47867962	43	3.8	43	77	7	181	22	19	29	28	1.98
47873527--47873576	22	2.2	23	89	10	77	30	18	2	50	1.58
47873968--47874094	64	2.0	64	87	0	182	31	25	22	20	1.98
47877164--47877203	3	13.3	3	100	0	80	67	0	0	32	0.91
47879343--47879376	18	1.9	18	88	5	52	50	0	5	44	1.26
47880117--47880163	16	2.9	16	81	15	60	34	4	4	57	1.38
47882015--47882144	63	2.0	65	88	2	192	25	16	6	50	1.70
47898163--47898366	56	3.8	56	85	5	260	27	19	29	24	1.98
47898163--47898416	56	4.8	51	80	8	244	27	19	27	24	1.98
47905906--47905945	19	2.1	19	85	0	53	32	2	5	60	1.32
47906931--47907017	25	3.5	25	80	1	86	18	22	17	41	1.90
47906959--47907037	25	3.2	25	87	0	95	17	20	17	44	1.87
47907122--47907194	27	2.8	25	82	8	92	17	26	21	34	1.96
47907122--47907194	25	2.9	27	82	11	84	17	26	21	34	1.96
47907120--47907244	24	5.1	23	70	16	83	18	27	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47911730--47911776	16	2.9	16	75	9	51	57	2	0	40	1.11
47914120--47914219	17	5.8	18	69	17	61	38	3	5	54	1.38
47922272--47922323	24	2.2	24	85	0	68	17	19	21	42	1.89
47922824--47922930	40	2.6	42	92	2	166	62	0	2	34	1.10
47922832--47922930	14	7.2	14	67	20	50	62	0	3	34	1.11
47922885--47922947	28	2.2	30	86	10	89	69	0	1	28	0.97
47922885--47922947	29	2.2	28	86	8	83	69	0	1	28	0.97
47928039--47928079	17	2.4	18	84	12	59	26	4	0	68	1.10
47928155--47928197	15	2.7	16	78	7	52	32	6	0	60	1.23
47928183--47928249	23	2.8	23	78	10	64	34	7	0	58	1.26
47929338--47929396	21	2.8	21	78	2	64	15	5	6	72	1.23
47929340--47929397	11	5.5	10	78	8	53	13	5	6	74	1.20
47932709--47932765	21	2.7	21	83	2	60	19	5	3	71	1.19
47942025--47942796	44	16.8	44	66	14	204	29	20	20	30	1.97
47942116--47942226	41	2.7	41	95	2	197	29	17	21	31	1.96
47942231--47942931	143	4.9	143	85	1	858	28	20	19	30	1.98
47955003--47955123	43	2.8	42	79	10	120	28	28	21	21	1.99
47955598--47955648	21	2.4	21	86	0	66	5	47	13	33	1.67
47955533--47955701	87	1.9	87	85	2	232	14	28	16	39	1.88
47960975--47961550	9	67.4	9	65	19	173	36	2	17	43	1.62
47960988--47961469	16	30.1	16	64	21	99	36	2	16	44	1.61
47961005--47961395	25	15.2	25	71	12	179	36	2	16	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47961091--47961336	41	5.9	41	79	6	235	37	2	16	43	1.61
47961097--47961375	41	6.9	41	77	12	168	37	2	16	43	1.60
47961359--47961436	41	1.9	41	94	0	138	39	2	15	42	1.61
47961258--47961548	25	11.6	25	76	9	193	36	1	18	43	1.59
47962243--47962315	21	3.3	21	68	17	58	60	4	4	31	1.34
47962727--47962751	10	2.5	10	100	0	50	44	20	8	28	1.79
47962693--47962796	45	2.3	44	85	11	131	42	18	6	32	1.76
47962696--47962776	19	4.9	18	68	28	65	44	18	6	30	1.74
47964810--47964894	7	12.0	7	74	7	73	45	38	0	15	1.46
47964811--47964906	14	6.8	14	77	11	79	46	36	0	16	1.47
47964820--47964904	22	4.0	22	70	6	75	47	35	0	17	1.48
47964811--47964875	29	2.2	28	81	7	76	46	40	0	13	1.44
47965427--47965689	114	2.3	113	90	2	411	23	21	19	35	1.96
47970863--47970887	13	1.9	13	100	0	50	36	0	8	56	1.29
47975662--47975693	15	2.1	15	94	0	55	68	9	6	15	1.36
47981742--47981776	6	5.7	6	89	3	52	17	2	2	77	1.02
47981742--47981796	12	4.5	12	78	17	51	12	3	5	78	1.06
47981742--47981797	25	2.2	24	84	6	67	12	3	5	78	1.05
47981764--47981820	21	2.7	21	76	10	62	10	3	10	75	1.16
47982201--47982245	24	1.9	24	86	4	65	13	0	26	60	1.34
47985818--47985856	6	6.5	6	91	8	62	35	0	0	64	0.94
47985801--47985856	18	3.2	18	82	12	71	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47985969--47985999	13	2.4	13	94	0	53	22	29	3	45	1.68
47986555--47986622	21	3.2	21	79	4	82	47	5	11	35	1.65
47988715--47988753	19	2.1	19	85	9	53	46	7	15	30	1.74
47990770--47990801	15	2.1	15	94	0	55	68	9	6	15	1.36
47991808--47991883	29	2.6	29	89	2	107	43	0	38	18	1.50
47991814--47991898	29	2.9	29	84	3	100	42	0	38	18	1.51
47997098--47997127	15	2.0	15	93	0	51	30	33	16	20	1.94
48001385--48001433	20	2.7	18	77	22	57	51	4	2	42	1.32
48011657--48011716	15	3.8	15	75	12	57	36	0	6	56	1.26
48014632--48014712	36	2.2	36	80	0	90	11	37	9	41	1.74
48018016--48018050	6	5.7	6	89	3	52	51	2	0	45	1.16
48020233--48020291	25	2.4	25	97	0	109	45	6	20	27	1.76
48027819--48027864	12	3.9	11	81	13	56	32	6	0	60	1.22
48029834--48030076	130	1.9	130	96	0	450	20	24	16	38	1.92
48030186--48030222	19	1.9	19	100	0	74	10	27	21	40	1.86
48033301--48033342	15	2.7	16	82	14	52	45	0	2	52	1.13
48033292--48033333	15	2.9	15	82	10	52	47	0	0	52	1.00
48033555--48033592	16	2.4	16	86	0	58	28	34	2	34	1.71
48034138--48034172	18	2.0	17	88	5	52	54	0	0	45	0.99
48034153--48034463	61	5.2	61	69	14	259	47	6	2	43	1.41
48034258--48034292	18	2.0	17	88	5	52	54	0	0	45	0.99
48034376--48034412	16	2.2	17	86	13	51	54	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48034496--48034532	16	2.2	17	86	13	51	54	0	2	43	1.14
48034479--48034532	15	3.4	16	80	19	53	51	0	1	46	1.11
48034454--48034536	28	2.8	29	70	12	71	53	1	2	43	1.21
48034130--48034533	120	3.4	120	97	0	745	48	4	2	44	1.36
48034574--48034716	44	3.2	43	69	13	126	48	2	2	46	1.31
48034581--48034724	47	3.1	45	68	11	123	49	3	2	44	1.33
48034540--48034755	91	2.4	91	91	0	351	46	4	3	46	1.38
48034596--48034740	47	3.2	46	70	9	143	48	4	2	44	1.36
48039706--48039740	15	2.3	15	90	0	52	60	2	0	37	1.12
48043356--48043650	156	1.9	156	83	2	387	27	13	17	40	1.88
48049290--48049348	30	2.0	30	89	0	91	11	23	35	28	1.91
48059254--48059279	6	4.3	6	100	0	52	80	0	0	19	0.71
48061253--48061768	89	5.8	88	73	6	387	29	23	16	31	1.96
48061263--48061791	133	4.0	133	87	1	711	29	23	16	30	1.96
48061253--48061792	44	12.2	44	71	8	324	29	23	16	30	1.96
48074964--48075011	15	3.1	15	82	8	53	79	12	2	6	1.01
48080172--48080196	12	2.1	12	100	0	50	36	8	16	40	1.77
48081992--48082036	23	2.0	23	90	0	72	57	4	6	31	1.44
48082133--48082376	70	3.6	66	72	16	169	53	4	6	34	1.48
48082095--48082329	24	10.3	23	69	17	111	55	3	6	34	1.45
48082691--48082742	27	2.0	26	81	11	61	65	0	13	21	1.26
48083892--48083951	21	2.9	21	82	9	86	28	0	1	70	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48086721--48086778	24	2.3	25	85	8	82	25	8	15	50	1.73
48088223--48088326	47	2.2	48	77	11	106	43	0	1	54	1.11
48088121--48088376	120	2.1	120	97	0	485	42	0	3	53	1.22
48088189--48088384	61	3.2	61	73	13	215	40	0	4	54	1.25
48101600--48102026	44	9.6	44	80	1	449	30	16	23	29	1.96
48101600--48102026	89	4.8	89	90	1	633	30	16	23	29	1.96
48102103--48102182	42	1.9	41	87	7	117	30	17	23	28	1.97
48103423--48103460	3	12.7	3	83	10	51	28	0	2	68	1.03
48103932--48104527	227	2.6	227	88	3	862	34	16	20	29	1.94
48103927--48104509	114	5.1	113	72	8	495	33	15	20	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221