Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  134  of  221  ( 26413 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41284876--41284925
11
4.6
11
75
9
50
4
16
10
70
1.30
41290861--41291049
27
7.1
27
76
7
172
20
17
19
41
1.90
41290848--41291042
79
2.5
80
79
5
218
22
16
20
41
1.90
41291008--41291090
42
2.0
41
90
2
130
12
18
31
38
1.87
41291050--41291121
26
2.7
27
89
4
110
12
16
29
41
1.85
41297346--41297394
15
3.3
15
91
5
73
73
6
0
20
1.04
41298289--41298327
11
3.6
11
89
3
53
10
7
0
82
0.86
41301359--41301508
36
4.2
36
81
3
194
40
29
12
18
1.87
41306258--41306290
17
1.9
17
88
11
50
51
9
0
39
1.34
41309658--41309702
17
2.6
17
75
0
54
40
4
15
40
1.67
41314928--41314968
21
2.0
21
85
0
55
29
2
19
48
1.61
41319672--41319759
40
2.2
40
87
0
122
42
18
28
11
1.85
41319672--41319733
20
3.1
20
69
0
52
43
16
29
11
1.82
41332226--41332275
19
2.6
19
90
0
73
38
16
10
36
1.82
41332623--41333355
44
16.8
43
68
14
232
28
23
19
28
1.98
41332630--41333430
217
3.7
217
87
0
1098
28
23
19
28
1.98
41333426--41333706
132
2.1
132
91
1
447
25
25
20
28
1.99
41341271--41341329
29
2.0
29
100
0
118
37
6
13
42
1.71
41341676--41341734
4
14.8
4
77
13
50
72
5
0
22
1.03
41342309--41342366
22
2.6
22
84
7
73
43
17
3
36
1.66
41342345--41342419
19
3.8
19
87
6
114
37
16
8
38
1.78
41342356--41342418
21
3.1
21
88
9
103
38
14
7
39
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41346529--41346553
12
2.1
12
100
0
50
76
0
0
24
0.80
41348719--41348777
30
2.0
30
89
0
91
32
13
22
32
1.92
41357603--41358194
138
4.3
138
90
1
891
45
5
8
40
1.58
41357693--41358047
71
5.1
71
63
21
185
45
6
8
39
1.60
41364162--41364204
22
2.0
22
86
9
61
39
2
0
58
1.11
41364476--41364536
13
4.7
13
72
0
50
37
24
6
31
1.81
41390784--41390828
23
2.0
23
91
8
74
15
11
4
68
1.34
41390851--41390884
18
1.9
18
88
5
52
32
5
2
58
1.37
41393315--41393346
14
2.3
14
94
0
55
21
0
28
50
1.49
41395441--41395567
66
1.9
65
82
1
155
17
10
25
46
1.79
41396396--41396443
9
5.6
9
80
9
64
43
18
2
35
1.62
41396394--41396472
16
5.0
16
77
13
83
44
15
1
39
1.54
41396477--41396530
17
3.1
18
79
17
69
40
0
1
57
1.09
41396616--41397008
9
44.0
9
65
17
63
50
19
1
28
1.57
41396622--41396981
34
10.6
34
68
16
142
50
19
1
28
1.57
41396683--41396722
12
3.3
12
85
0
53
50
17
0
32
1.47
41396616--41396792
97
1.8
95
97
2
336
55
16
1
26
1.49
41396775--41396982
16
13.1
16
70
19
127
46
21
1
30
1.62
41396771--41397003
25
9.3
25
81
5
283
46
21
1
30
1.61
41400167--41400343
87
2.0
87
86
0
246
40
16
29
12
1.87
41400294--41400342
21
2.3
21
85
0
62
34
20
38
6
1.77
41400692--41401003
43
7.3
43
79
3
306
28
19
25
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41401097--41401140
22
2.0
22
86
0
61
43
27
20
9
1.82
41401578--41401610
14
2.2
15
89
10
50
54
0
0
45
0.99
41402755--41403123
41
9.0
40
84
3
407
20
20
28
30
1.98
41402754--41403123
82
4.5
82
84
1
474
20
20
29
30
1.98
41402754--41403123
123
3.0
121
86
3
481
20
20
29
30
1.98
41403105--41403142
19
2.0
19
100
0
76
26
31
26
15
1.96
41403516--41403565
14
3.5
14
76
15
57
20
0
36
44
1.52
41403856--41403889
14
2.4
14
90
0
50
23
0
44
32
1.54
41404352--41404379
14
2.0
14
100
0
56
50
0
0
50
1.00
41404522--41404724
83
2.4
81
82
4
226
45
12
11
30
1.78
41407127--41407170
21
2.1
21
100
0
88
22
9
9
59
1.56
41409095--41409293
43
4.7
43
86
3
251
24
20
28
26
1.99
41409095--41409273
85
2.1
86
89
3
272
24
20
29
25
1.99
41409881--41410017
57
2.4
57
85
1
175
29
10
16
43
1.80
41412419--41412607
50
3.7
51
81
6
197
29
22
26
21
1.99
41412526--41412646
49
2.4
51
81
4
138
33
19
23
23
1.97
41412419--41412656
50
4.7
51
78
7
184
29
21
26
22
1.99
41415057--41415090
15
2.3
15
94
0
59
41
17
5
35
1.74
41417871--41417950
21
3.8
21
94
0
133
11
27
35
26
1.90
41418107--41418150
22
2.0
22
100
0
88
31
4
13
50
1.62
41422353--41422424
16
4.5
16
87
0
108
38
5
26
29
1.79
41422612--41422659
19
2.7
18
87
6
62
54
2
0
43
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41422561--41422689
56
2.3
56
78
9
136
50
4
0
44
1.28
41424207--41424250
20
2.2
20
84
8
54
68
2
22
6
1.25
41425229--41425266
15
2.5
15
83
8
51
39
2
0
57
1.12
41425553--41425586
17
2.0
17
88
11
52
38
2
5
52
1.41
41429041--41429093
21
2.5
21
90
0
88
26
7
35
30
1.84
41436186--41436238
22
2.4
22
84
6
63
32
1
7
58
1.37
41437892--41437955
21
3.0
21
88
4
94
40
20
4
34
1.73
41458370--41458477
29
3.8
28
67
8
83
33
16
25
25
1.96
41458314--41458476
57
2.9
57
84
0
209
33
16
25
23
1.96
41459398--41459461
26
2.4
26
92
2
101
29
4
15
50
1.65
41463389--41463440
25
2.1
25
100
0
104
28
19
23
28
1.98
41465227--41465256
15
2.0
15
93
0
51
70
13
0
16
1.18
41471372--41471402
9
3.4
9
95
0
53
80
6
3
9
0.99
41471408--41471447
6
6.8
6
85
5
55
77
0
22
0
0.77
41471408--41471448
11
3.6
11
90
6
64
75
0
24
0
0.80
41471407--41471447
12
3.5
12
93
6
75
75
0
24
0
0.80
41471415--41471450
18
2.0
18
94
0
63
75
0
25
0
0.81
41473633--41474259
45
13.9
45
86
0
831
30
15
22
31
1.95
41474271--41474609
132
2.6
132
89
3
520
28
20
25
25
1.99
41474635--41474775
50
2.8
50
78
0
156
36
19
17
26
1.94
41474787--41474929
44
3.2
43
75
10
128
30
16
26
25
1.97
41474813--41474955
45
3.2
45
76
9
139
29
19
25
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41475162--41475191
15
2.0
15
93
0
51
70
13
0
16
1.18
41475292--41475327
18
1.9
19
88
5
56
44
38
0
16
1.48
41477386--41477507
60
2.0
60
98
0
235
37
16
17
28
1.91
41482574--41482628
17
3.3
17
70
12
51
43
1
7
47
1.41
41484958--41484997
21
1.9
21
85
10
55
12
7
5
75
1.18
41487409--41487463
17
3.3
17
70
12
51
43
1
7
47
1.41
41489793--41489832
21
1.9
21
85
10
55
12
7
5
75
1.18
41492242--41492296
17
3.3
17
70
12
51
43
1
7
47
1.41
41494626--41494663
20
1.9
20
84
10
51
13
7
5
73
1.22
41497075--41497129
17
3.3
17
70
12
51
43
1
7
47
1.41
41501911--41501965
17
3.3
17
70
12
51
43
1
7
47
1.41
41504297--41504336
21
1.9
21
85
10
55
12
7
5
75
1.18
41506749--41506803
17
3.3
17
70
12
51
43
1
7
47
1.41
41508952--41509050
43
2.3
44
91
1
164
27
16
25
31
1.96
41517569--41517729
40
4.1
39
79
12
159
26
22
27
24
2.00
41517935--41518292
47
7.6
47
95
1
626
32
8
30
29
1.87
41517935--41518292
143
2.5
142
95
0
628
32
8
30
29
1.87
41518411--41518489
37
2.1
37
90
0
122
24
18
31
25
1.98
41520950--41521040
40
2.3
40
90
3
139
26
13
21
38
1.90
41530967--41531106
40
3.5
40
74
5
106
40
22
17
20
1.91
41531113--41531395
98
3.0
95
85
6
403
26
24
20
28
1.99
41531216--41531391
91
1.9
91
92
0
298
27
23
19
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41531549--41531626
41
1.9
41
86
5
113
20
20
28
30
1.98
41531655--41531716
8
7.1
8
76
16
61
37
0
4
58
1.20
41531663--41531730
19
3.6
20
79
16
83
38
0
5
55
1.24
41531659--41531752
38
2.4
38
79
13
93
40
1
6
52
1.34
41534095--41534125
16
1.9
16
93
0
53
35
25
6
32
1.82
41541651--41541701
21
2.4
21
90
0
75
35
17
43
3
1.68
41541585--41541782
87
2.3
87
85
3
256
37
18
31
11
1.87
41541758--41541807
21
2.4
21
89
0
82
30
14
46
10
1.77
41542142--41542606
43
10.8
42
87
1
457
25
22
28
23
1.99
41542141--41542628
86
5.7
86
85
2
529
26
22
28
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221