genome.fa.s26.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  132  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40685423--40685517	26	3.9	23	78	13	84	32	20	25	22	1.97
40686553--40686592	19	2.2	18	86	13	55	42	10	2	45	1.51
40690830--40690910	42	1.9	42	94	0	144	48	16	6	29	1.70
40690830--40690923	42	2.2	41	87	5	134	48	15	5	29	1.67
40690941--40690980	19	2.2	18	90	4	62	42	12	2	42	1.56
40696331--40696370	21	2.0	20	85	14	55	27	12	22	37	1.90
40707385--40707435	22	2.3	23	76	10	61	15	1	43	39	1.58
40728949--40729007	24	2.4	24	74	20	59	52	3	3	40	1.35
40729901--40729936	17	2.2	16	90	9	56	80	2	8	8	0.99
40732311--40732348	14	3.0	13	88	11	53	31	0	0	68	0.90
40732409--40732463	15	3.6	15	80	4	65	27	3	0	69	1.05
40732503--40732550	10	4.8	10	81	0	60	27	0	6	66	1.15
40754179--40754204	13	2.0	13	100	0	52	53	0	0	46	1.00
40761184--40761231	16	3.1	16	85	8	55	54	0	0	45	0.99
40771330--40771358	13	2.1	14	93	6	51	68	13	6	10	1.37
40783553--40783590	16	2.4	16	82	4	51	23	0	5	71	1.07
40785692--40786634	105	9.1	104	83	3	1006	23	16	21	37	1.93
40785731--40786634	315	2.9	313	83	1	1112	23	16	21	38	1.93
40789812--40789840	5	6.0	5	96	4	51	82	0	0	17	0.66
40799376--40799441	23	2.9	23	95	0	114	22	18	28	30	1.97
40799373--40799448	23	3.3	23	83	12	102	23	18	27	30	1.98
40799652--40799699	23	2.0	25	84	8	64	39	0	22	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40800105--40800134	15	2.0	15	100	0	60	53	6	20	20	1.67
40806091--40806203	42	2.7	42	83	2	120	15	23	18	43	1.87
40806129--40806197	21	3.3	21	72	8	59	15	24	17	42	1.88
40809576--40809644	21	3.2	21	66	22	61	21	17	11	49	1.78
40812014--40812054	16	2.6	16	100	0	82	48	0	39	12	1.41
40812358--40812444	27	3.2	27	78	0	102	37	16	25	20	1.93
40816986--40817083	25	4.0	25	73	13	71	27	20	24	27	1.99
40817801--40817868	34	2.0	34	100	0	136	20	17	17	44	1.87
40827812--40827858	21	2.2	21	96	0	85	25	10	25	38	1.88
40830200--40830362	45	3.7	43	75	4	146	43	12	16	27	1.84
40830156--40830311	45	3.5	44	76	3	125	42	14	16	26	1.86
40837435--40837469	4	8.8	4	93	0	61	25	0	22	51	1.48
40837591--40837647	26	2.2	26	81	9	62	24	5	12	57	1.55
40839185--40839224	20	2.0	20	95	0	71	25	22	2	50	1.62
40846600--40846737	9	13.6	10	68	18	56	56	1	4	37	1.28
40846608--40846675	21	3.2	21	67	8	57	57	1	2	38	1.23
40846653--40846743	10	9.6	9	75	15	69	60	1	4	34	1.24
40846991--40847096	9	11.1	9	74	13	79	33	2	1	62	1.21
40846992--40847089	18	5.2	18	78	12	108	32	3	1	63	1.17
40846992--40847089	27	3.8	27	73	20	93	32	3	1	63	1.17
40847031--40847081	21	2.4	21	90	3	75	33	1	0	64	1.05
40847739--40847779	21	1.9	21	85	5	55	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40847742--40847814	28	2.6	27	85	8	85	63	1	1	34	1.12
40847779--40847808	11	2.7	11	89	0	51	56	0	3	40	1.16
40848472--40848518	6	7.8	6	87	0	67	65	0	4	29	1.11
40849431--40849474	24	1.9	24	90	9	74	36	0	2	61	1.09
40849565--40849590	9	2.9	9	100	0	52	57	11	0	30	1.34
40849632--40849677	9	5.1	9	100	0	92	56	10	0	32	1.34
40849564--40849751	86	2.2	83	94	4	333	50	9	3	37	1.50
40849750--40849791	16	2.6	16	92	0	66	42	7	2	47	1.43
40849765--40849826	23	2.7	23	82	2	72	48	1	1	48	1.21
40849645--40849783	66	2.2	65	80	14	175	48	8	2	40	1.46
40855792--40855826	18	1.9	18	94	0	61	17	11	37	34	1.85
40863004--40863039	19	1.9	19	94	5	65	22	8	0	69	1.15
40864063--40864092	14	2.1	15	93	6	53	13	43	13	30	1.82
40868010--40868047	20	1.9	20	88	0	58	13	2	39	44	1.57
40868343--40868414	31	2.3	31	87	0	108	33	22	4	40	1.73
40869719--40869766	22	2.2	22	88	0	69	56	4	16	22	1.58
40883854--40883897	21	2.1	21	95	0	79	11	20	29	38	1.87
40883989--40884339	43	8.2	42	76	6	215	27	29	19	24	1.98
40884662--40884721	21	2.9	21	79	0	66	8	43	15	33	1.76
40884703--40884871	66	2.6	64	83	4	196	15	27	15	41	1.88
40885066--40885125	30	2.0	30	100	0	120	36	16	16	30	1.91
40887759--40888104	9	40.9	9	66	21	128	32	1	19	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40887772--40888111	25	13.8	25	68	16	149	32	1	19	46	1.59
40887760--40887891	50	2.6	50	85	3	174	34	2	19	43	1.64
40887876--40887952	32	2.3	34	80	17	97	41	0	15	42	1.47
40887901--40887943	12	4.0	11	77	17	54	41	0	11	46	1.40
40887928--40887952	13	1.9	13	100	0	50	36	0	16	48	1.46
40888003--40888082	16	4.9	16	78	6	61	30	1	21	47	1.59
40888091--40888135	23	1.9	24	90	4	74	40	0	17	42	1.50
40888104--40888297	32	6.2	32	69	21	117	35	0	15	48	1.50
40888131--40888269	21	6.0	21	67	19	73	33	0	16	49	1.51
40887774--40888226	220	2.1	219	92	2	757	33	1	18	46	1.56
40888131--40888290	49	3.3	49	75	13	186	33	0	16	49	1.51
40888101--40888323	96	2.3	97	87	6	321	34	0	15	48	1.49
40888178--40888249	36	2.0	36	89	5	110	37	0	12	50	1.41
40888093--40888267	12	16.1	11	69	20	68	35	0	16	48	1.50
40888329--40888373	19	2.3	19	85	11	56	53	2	0	44	1.13
40888340--40888392	21	2.5	22	78	9	65	56	0	1	41	1.10
40890953--40890982	4	7.5	4	92	0	51	26	0	0	73	0.84
40890994--40891060	20	3.2	21	75	14	59	49	0	7	43	1.31
40891079--40891111	11	3.1	11	86	8	50	18	3	0	78	0.87
40891745--40891809	15	4.2	16	79	13	73	32	44	0	23	1.53
40891748--40891815	8	9.1	7	77	13	50	33	44	0	22	1.53
40891745--40891802	7	7.4	8	79	13	59	32	43	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40891770--40891811	17	2.6	16	85	10	59	35	40	0	23	1.55
40891914--40891987	33	2.1	36	80	9	91	40	39	1	18	1.60
40892051--40892257	63	3.3	63	95	0	360	47	22	0	29	1.51
40892351--40892383	14	2.3	15	94	5	59	36	33	0	30	1.58
40892771--40893022	41	6.2	41	81	3	269	32	23	22	21	1.98
40895731--40895768	17	2.2	17	90	0	58	0	57	0	42	0.98
40895731--40895768	11	3.4	11	88	3	58	0	57	0	42	0.98
40898954--40898993	20	2.0	20	90	0	62	50	10	10	30	1.69
40898942--40899008	34	1.9	35	87	3	100	46	11	8	32	1.72
40898977--40899016	14	2.9	14	84	0	53	42	15	7	35	1.75
40901111--40901146	2	18.0	2	94	0	63	50	2	47	0	1.15
40914503--40914580	28	2.8	28	82	7	104	56	1	10	32	1.41
40914846--40914890	23	1.9	24	81	4	56	51	4	8	35	1.54
40915573--40915628	20	2.8	19	81	7	58	67	7	21	3	1.30
40916486--40917178	174	4.0	171	89	5	1026	29	19	17	33	1.95
40916808--40917049	46	5.5	46	69	12	184	30	19	17	32	1.95
40917074--40917296	118	1.9	118	91	0	365	31	18	17	32	1.94
40917275--40917517	46	5.5	46	67	16	136	30	18	17	32	1.95
40916693--40917646	467	2.0	468	96	0	1739	29	19	18	32	1.95
40916900--40917471	293	2.0	292	92	0	964	30	19	17	32	1.95
40917192--40917832	175	3.7	175	93	1	1088	29	20	17	32	1.95
40917260--40917832	44	13.0	46	66	16	218	28	20	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40935319--40935545	40	5.7	40	94	0	400	29	20	28	21	1.98
40943418--40943465	25	1.9	25	82	0	60	50	10	16	22	1.76
40944447--40944524	28	2.8	28	82	7	104	55	1	11	32	1.44
40944784--40944828	23	1.9	24	81	4	56	51	4	8	35	1.54
40946088--40946134	15	3.3	14	76	11	51	17	0	4	78	0.90
40960886--40960923	17	2.2	17	95	0	67	18	5	0	76	0.97
40962032--40962073	18	2.3	18	83	4	57	64	2	0	33	1.07
40967802--40967840	12	3.2	12	82	13	53	20	41	10	28	1.85
40968077--40968124	23	2.0	24	84	8	62	39	22	8	29	1.83
40968716--40968817	42	2.4	42	90	0	168	29	22	23	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221