genome.fa.s26.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  177  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52801438--52801476	19	2.1	19	90	0	60	51	0	0	48	1.00
52804238--52804281	13	3.4	13	78	12	54	31	0	0	68	0.90
52804476--52804517	17	2.4	18	92	4	68	69	0	2	28	1.01
52805045--52805078	17	2.1	17	88	5	52	64	5	2	26	1.30
52806695--52806725	14	2.1	15	94	5	55	6	3	6	83	0.88
52812111--52812161	25	2.0	25	88	0	75	23	11	7	56	1.61
52819712--52819741	14	2.1	14	93	0	51	40	3	26	30	1.72
52822900--52822963	29	2.1	29	91	5	101	70	10	1	17	1.24
52824029--52824084	19	2.9	21	76	17	66	30	1	1	66	1.12
52830937--52831019	30	2.8	30	83	7	105	28	14	24	32	1.94
52832337--52832976	319	2.0	319	93	1	1088	30	17	13	38	1.88
52834892--52834917	3	8.7	3	100	0	52	69	0	0	30	0.89
52836086--52836133	20	2.5	18	86	10	60	14	2	20	62	1.42
52836502--52836719	54	4.2	54	69	14	188	28	21	17	32	1.96
52836614--52836735	54	2.3	54	85	2	156	32	18	18	30	1.95
52836813--52836983	54	3.3	55	65	12	151	32	18	19	29	1.96
52836772--52836981	103	2.0	103	94	0	366	31	19	20	29	1.97
52836660--52837124	246	1.9	246	90	1	736	29	20	19	29	1.97
52836875--52838795	143	13.4	143	85	1	2418	28	21	19	30	1.98
52839701--52839729	11	2.6	11	100	0	58	34	0	0	65	0.93
52840186--52840242	28	2.0	28	100	0	114	24	3	10	61	1.44
52840190--52840249	28	2.2	28	90	3	95	28	1	11	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52840842--52840971	43	3.0	42	79	8	145	20	16	30	31	1.95
52847983--52848008	3	8.7	3	100	0	52	69	0	0	30	0.89
52849191--52849242	20	2.6	19	74	20	52	13	3	25	57	1.53
52853380--52853431	26	2.0	26	100	0	104	15	19	11	53	1.71
52860796--52861200	202	2.0	202	94	0	711	28	20	20	31	1.97
52862345--52862396	17	2.9	18	75	16	54	40	19	5	34	1.75
52862379--52862450	36	2.0	36	81	2	83	31	23	8	36	1.85
52871406--52872850	730	2.0	728	92	1	2401	35	19	21	23	1.96
52875994--52876177	72	2.6	72	98	0	350	41	23	6	28	1.79
52880418--52880601	72	2.6	72	99	0	359	41	23	6	27	1.79
52880602--52880630	3	9.7	3	100	0	58	68	0	0	31	0.89
52890231--52890368	59	2.3	61	81	6	156	39	5	10	43	1.64
52903628--52903662	16	2.2	16	94	0	61	42	5	25	25	1.77
52903902--52903971	22	3.3	22	73	13	74	57	5	0	37	1.23
52904550--52904590	22	1.9	21	90	5	64	0	14	2	82	0.76
52907786--52907879	14	5.9	16	73	18	54	26	3	3	67	1.21
52907830--52907898	29	2.4	29	76	9	70	28	2	2	65	1.22
52908030--52908112	35	2.4	35	93	0	139	43	2	18	36	1.63
52924363--52924410	25	1.9	25	82	0	60	54	0	0	45	0.99
52932139--52932177	19	2.1	19	85	0	51	64	2	5	28	1.28
52937719--52937776	29	1.9	29	82	6	71	39	5	6	48	1.52
52940403--52940648	35	7.0	35	79	3	262	34	33	4	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52940403--52940648	105	2.3	105	84	2	307	34	33	4	27	1.77
52955512--52955565	16	3.4	16	86	0	81	35	1	33	29	1.69
52955782--52956074	120	2.4	120	92	1	480	50	4	2	43	1.34
52955898--52955949	15	3.6	15	80	12	56	53	1	0	44	1.11
52956115--52956175	28	2.2	28	85	5	81	50	3	0	45	1.17
52956081--52956297	91	2.4	89	83	6	281	46	3	3	46	1.36
52956115--52956257	44	3.2	43	70	20	121	48	2	2	47	1.25
52959263--52959318	12	4.8	12	78	14	55	48	1	8	41	1.45
52960265--52960303	8	5.1	8	81	12	55	64	25	0	10	1.25
52962346--52962410	23	2.6	25	83	11	80	41	7	1	49	1.41
52962587--52962626	11	3.7	11	86	6	64	75	0	25	0	0.81
52962752--52962786	3	11.7	3	93	0	61	2	0	28	68	1.04
52962749--52962787	12	3.2	12	92	0	69	7	0	25	66	1.18
52963633--52963670	18	2.1	18	90	0	58	34	7	44	13	1.72
52965924--52965950	11	2.5	11	100	0	54	40	14	7	37	1.74
52969028--52969114	26	3.4	25	69	23	74	54	11	4	29	1.56
52969142--52969166	9	2.8	9	100	0	50	0	24	0	76	0.80
52969153--52969233	19	4.3	18	71	25	53	0	34	0	65	0.93
52969200--52969263	4	16.0	4	82	12	69	0	31	0	68	0.90
52969169--52969272	36	2.9	35	78	13	104	0	34	0	65	0.93
52969189--52969273	18	4.4	18	70	15	64	0	36	0	63	0.95
52969385--52969450	25	2.5	26	90	4	98	50	0	12	37	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52974231--52974324	44	2.1	44	96	0	170	36	12	7	43	1.71
52974249--52974319	22	3.2	22	63	21	58	42	12	7	38	1.70
52974303--52974346	22	2.0	22	86	4	63	43	11	4	40	1.61
52975175--52975201	7	3.9	7	100	0	54	25	0	29	44	1.54
52975200--52975225	7	3.7	7	100	0	52	26	15	15	42	1.87
52977572--52977628	20	2.9	20	69	10	55	40	0	0	59	0.97
52980676--52980771	48	2.0	48	93	0	165	37	9	21	31	1.85
52985035--52985071	18	2.0	19	89	5	58	32	10	13	43	1.79
53007508--53007600	39	2.5	37	80	7	98	26	29	22	21	1.99
53007570--53007654	38	2.2	38	93	0	152	32	24	18	23	1.97
53008919--53008959	8	5.0	8	94	5	73	60	0	0	39	0.96
53011844--53011895	26	2.0	26	100	0	104	23	19	11	46	1.82
53012224--53012272	25	2.0	26	84	11	68	36	10	8	44	1.68
53017729--53017811	42	2.0	42	97	0	157	30	14	14	40	1.86
53018638--53018715	26	3.1	26	76	12	65	19	20	21	38	1.94
53021484--53021574	25	3.5	25	66	21	69	48	14	1	36	1.51
53025482--53025548	30	2.2	29	82	12	82	38	10	8	41	1.71
53025482--53025560	31	2.6	29	82	11	88	36	10	8	44	1.70
53029423--53029649	125	1.8	125	95	0	409	29	16	22	31	1.96
53032788--53032857	17	3.9	17	68	17	52	48	4	5	41	1.46
53032679--53032916	115	2.1	115	93	1	406	43	9	8	37	1.69
53032910--53033288	21	16.2	22	72	23	141	29	0	26	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53032981--53033164	28	6.2	29	75	17	164	28	0	27	43	1.55
53032921--53033136	93	2.3	93	95	0	389	28	0	27	43	1.55
53032983--53033263	122	2.3	122	93	5	487	28	0	27	44	1.55
53033200--53033265	28	2.3	30	86	7	100	28	0	25	45	1.54
53033196--53033265	29	2.4	28	88	4	104	28	0	27	44	1.55
53033281--53033418	25	5.7	25	79	14	173	43	14	0	41	1.50
53033291--53033472	44	4.0	44	79	12	213	46	13	0	39	1.48
53033281--53033462	95	1.9	94	96	1	337	45	13	0	40	1.48
53033895--53033929	18	1.9	18	94	0	61	34	8	31	25	1.86
53034579--53034610	7	4.6	7	92	0	55	56	12	3	28	1.51
53034781--53034818	20	1.9	20	84	10	51	55	7	2	34	1.43
53035712--53035754	11	3.8	12	81	6	54	58	0	0	41	0.98
53035759--53035789	11	2.8	11	90	0	53	51	6	22	19	1.69
53036320--53036436	10	12.4	9	68	16	60	65	3	1	29	1.18
53036364--53036436	29	2.5	29	84	4	94	67	4	2	26	1.22
53037993--53038028	3	12.0	3	100	0	72	66	0	0	33	0.92
53046359--53046422	19	3.4	19	86	0	92	37	9	12	40	1.75
53049242--53049287	24	1.9	24	86	0	65	47	15	26	10	1.78
53053206--53054229	132	7.8	132	94	0	1721	28	18	23	29	1.98
53053287--53054158	44	19.8	44	63	16	166	29	18	23	29	1.98
53054555--53054623	19	3.6	19	92	0	120	37	10	14	37	1.80
53054555--53054653	19	4.9	21	83	6	84	38	8	16	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53056397--53056435	20	1.9	20	84	5	51	69	0	7	23	1.14
53056582--53056618	20	1.9	20	88	5	58	67	5	0	27	1.12
53062110--53062155	22	2.1	22	100	0	92	17	8	39	34	1.80
53064359--53064388	14	2.1	14	93	0	51	30	10	0	60	1.30
53077790--53077827	14	2.6	15	83	4	51	44	7	5	42	1.56
53089775--53089818	21	2.1	21	100	0	88	27	29	11	31	1.91
53091928--53091970	18	2.4	18	92	0	68	27	25	20	25	1.99
53096323--53096350	6	4.7	6	100	0	56	85	0	14	0	0.59
53099931--53099995	27	2.4	27	78	0	76	26	26	12	35	1.91
53100106--53100157	27	1.9	27	84	0	68	34	26	9	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221