genome.fa.s26.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  139  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42723471--42723612	40	3.5	40	86	5	180	22	23	4	49	1.69
42726648--42726698	24	2.1	24	92	0	84	21	31	33	13	1.92
42726654--42726706	24	2.2	24	89	0	79	16	30	35	16	1.92
42728824--42728929	52	2.0	52	100	0	212	54	9	9	26	1.63
42731377--42731468	25	3.7	25	78	5	78	26	23	21	28	1.99
42734079--42734140	7	8.9	7	77	7	63	56	0	6	37	1.25
42734079--42734111	13	2.5	13	95	5	57	60	0	0	39	0.97
42734079--42734138	22	2.9	21	85	5	77	58	0	6	35	1.24
42734144--42734177	7	4.9	7	88	0	50	35	0	32	32	1.58
42734133--42734177	14	3.3	14	90	3	65	33	0	33	33	1.58
42735844--42735896	27	1.9	28	88	11	83	20	9	13	56	1.64
42736548--42736590	19	2.3	19	83	0	50	32	2	9	55	1.44
42740729--42740764	10	3.5	10	88	7	54	27	0	0	72	0.85
42740731--42740761	11	2.8	11	100	0	62	25	0	0	74	0.82
42744935--42745032	40	2.5	40	96	0	178	27	22	20	29	1.98
42747159--42747218	24	2.5	23	83	5	66	51	31	1	15	1.53
42757557--42757592	16	2.2	16	90	0	54	41	2	5	50	1.40
42760943--42761002	30	2.0	30	93	0	102	56	16	3	23	1.55
42762149--42762198	22	2.3	21	80	10	55	72	0	0	28	0.86
42762639--42762706	23	3.0	23	73	16	61	42	23	16	17	1.88
42766774--42766832	30	2.0	30	96	3	111	30	20	22	27	1.98
42767695--42767794	12	8.6	12	69	22	54	46	1	2	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42767665--42767791	37	3.6	37	77	11	106	44	1	3	49	1.30
42767885--42767977	44	2.1	44	88	6	134	37	24	3	34	1.72
42788460--42788495	18	2.1	18	89	5	56	22	2	5	69	1.22
42789356--42789412	30	1.9	30	86	10	82	40	3	26	29	1.73
42789624--42789655	13	2.5	13	94	0	55	31	0	12	56	1.37
42789750--42789991	50	4.7	50	86	4	297	26	24	29	19	1.99
42789750--42789999	100	2.4	103	88	6	364	26	24	29	20	1.99
42795580--42795899	159	2.0	159	95	0	577	39	6	18	35	1.78
42796827--42796865	17	2.4	16	86	4	51	69	2	0	28	1.02
42798856--42799019	43	3.8	44	72	2	143	23	28	22	25	1.99
42798856--42799266	87	4.7	87	82	5	325	24	26	21	27	2.00
42798896--42799036	43	3.3	43	73	2	147	22	24	26	25	2.00
42798943--42799257	174	1.8	174	84	5	431	24	25	22	27	2.00
42801375--42801438	30	2.2	29	83	5	76	14	9	6	70	1.33
42801366--42801455	28	3.1	27	78	12	81	14	7	7	70	1.34
42806302--42806339	16	2.4	16	95	0	67	71	0	2	26	1.00
42807886--42807940	23	2.4	23	81	6	58	32	16	10	40	1.83
42811539--42811615	26	3.0	26	92	0	118	37	20	23	18	1.94
42811756--42811814	27	2.2	27	84	0	73	23	18	22	35	1.96
42811766--42811825	27	2.2	27	90	0	93	16	18	21	43	1.88
42814252--42814289	20	1.9	20	88	0	58	52	0	10	36	1.36
42816415--42816460	25	1.9	24	86	8	67	60	4	4	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42817051--42817163	19	5.8	19	83	4	154	34	16	10	38	1.84
42817051--42817162	40	2.8	40	91	2	174	34	16	10	38	1.83
42817044--42817163	59	2.1	56	84	6	152	35	16	10	38	1.82
42817373--42817494	44	2.8	44	78	13	117	27	24	18	28	1.98
42817367--42817494	45	2.9	45	78	12	147	28	25	17	28	1.98
42817596--42817711	45	2.6	44	79	12	130	26	23	20	29	1.99
42817366--42818238	217	4.1	217	89	3	1289	27	22	19	30	1.98
42817799--42818137	44	7.7	45	70	15	160	27	23	19	30	1.98
42817366--42818215	426	2.0	426	90	0	1326	27	22	19	30	1.98
42818231--42818712	132	3.7	131	92	2	788	25	23	19	31	1.98
42818518--42818702	44	4.2	44	64	13	110	27	24	18	29	1.98
42819923--42819967	6	7.2	6	82	9	54	2	22	0	75	0.91
42819924--42819979	20	2.9	19	84	7	69	1	19	0	78	0.84
42819931--42819978	12	3.8	12	84	13	53	0	20	0	79	0.74
42819931--42819979	13	3.8	13	82	15	57	0	20	0	79	0.73
42824879--42824925	25	2.0	24	87	8	69	57	4	8	29	1.48
42825555--42825667	19	5.8	19	83	4	154	34	16	10	38	1.84
42825555--42825666	40	2.8	40	91	2	174	34	16	10	38	1.83
42825548--42825667	59	2.1	56	84	6	152	35	16	10	38	1.82
42826631--42826797	23	7.1	23	80	4	199	20	16	20	41	1.90
42826612--42827086	47	9.8	46	77	9	239	25	14	19	40	1.89
42826612--42826964	70	5.2	70	80	11	369	23	15	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42826671--42826917	127	1.9	126	87	3	361	21	14	21	42	1.89
42826801--42827088	70	4.0	71	81	5	296	27	12	18	40	1.87
42826804--42827089	47	6.0	47	80	7	272	27	12	18	40	1.87
42826804--42827089	23	12.0	23	76	6	266	27	12	18	40	1.87
42829360--42829385	12	2.2	12	100	0	52	11	7	7	73	1.26
42831372--42831423	20	2.8	18	78	21	63	51	1	1	44	1.23
42834703--42834745	23	2.0	23	86	9	63	23	0	9	67	1.19
42842439--42842503	9	6.9	9	76	10	51	58	1	1	38	1.17
42844178--42844211	18	1.9	17	88	5	50	67	2	0	29	1.05
42845653--42845694	19	2.3	19	80	15	52	50	2	2	45	1.27
42852483--42852724	68	3.6	67	75	4	216	23	21	17	36	1.94
42852471--42852723	136	1.9	136	78	1	283	22	21	18	37	1.94
42852648--42852901	122	2.1	122	89	1	384	25	23	16	33	1.96
42853323--42853403	38	2.1	38	97	0	153	45	25	12	16	1.82
42856399--42856427	14	2.1	14	100	0	58	58	27	6	6	1.50
42858191--42858223	10	3.4	10	87	8	50	21	9	12	57	1.62
42859125--42859149	12	2.1	12	100	0	50	16	0	16	68	1.22
42861448--42861480	3	11.0	3	100	0	66	66	0	0	33	0.92
42881319--42881365	24	1.9	25	86	4	69	44	0	2	53	1.12
42882832--42883157	165	2.0	160	84	7	426	38	13	12	35	1.83
42884618--42884673	21	2.9	21	75	21	59	35	23	37	3	1.72
42885311--42885505	98	2.0	96	92	4	320	48	17	6	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42886039--42886074	6	5.8	6	87	6	54	0	0	13	86	0.58
42890276--42890335	25	2.4	25	85	0	84	43	18	20	18	1.88
42891235--42891478	50	4.9	50	84	1	267	22	29	20	27	1.99
42898667--42898723	22	2.7	22	82	15	75	33	0	36	29	1.58
42899041--42899094	10	5.0	10	81	18	56	74	0	0	25	0.83
42899058--42899085	13	2.2	13	100	0	56	71	0	0	28	0.86
42908169--42908273	38	2.8	38	86	2	131	15	16	31	37	1.89
42908248--42908300	22	2.4	23	81	15	67	20	15	26	37	1.92
42913927--42914054	50	2.6	50	84	0	157	40	14	14	31	1.85
42919355--42919583	50	4.6	50	84	0	278	26	20	29	23	1.99
42922584--42922906	176	1.8	175	91	3	533	32	8	26	31	1.87
42922873--42923236	194	1.9	194	82	4	466	29	14	20	35	1.92
42925013--42925062	19	2.7	18	85	14	75	70	0	2	28	0.99
42925015--42925068	21	2.8	19	86	8	65	68	0	1	29	1.00
42925062--42925101	17	2.2	19	91	8	66	47	0	2	50	1.14
42925098--42925139	10	4.6	9	82	11	50	78	2	2	16	0.96
42925098--42925140	20	2.2	19	88	12	61	79	2	2	16	0.95
42925318--42925420	29	3.7	26	79	15	116	32	3	0	63	1.19
42925343--42925445	19	5.6	18	74	19	79	30	1	0	66	1.08
42925335--42925469	38	3.5	35	75	14	99	34	1	0	63	1.09
42925366--42925469	48	2.1	49	87	5	149	34	0	0	63	1.07
42925344--42925445	28	3.6	27	82	12	100	29	1	0	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42925335--42925463	10	13.4	10	74	9	90	34	1	0	63	1.09
42925546--42925742	88	2.3	87	82	11	219	35	7	18	39	1.79
42928201--42928239	21	1.9	20	89	5	60	46	2	10	41	1.51
42929480--42929514	2	17.5	2	93	0	61	48	48	2	0	1.16
42935541--42935699	51	3.0	52	81	13	180	27	33	1	38	1.65
42935662--42935725	27	2.4	27	87	10	87	32	35	1	29	1.67
42936078--42936115	19	2.0	19	94	0	67	26	7	31	34	1.85
42937008--42937044	9	4.1	9	92	0	65	45	13	10	29	1.77
42937403--42937463	19	3.2	18	73	13	52	22	36	0	40	1.55
42942337--42942451	31	3.8	30	76	7	99	40	22	14	22	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221