genome.fa.s26.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  163  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49006860--49006922	27	2.3	26	76	10	63	50	11	0	38	1.38
49006889--49006918	15	2.0	15	93	0	51	40	10	0	50	1.36
49007985--49008049	25	2.6	24	73	4	58	21	26	12	40	1.88
49007960--49008099	50	2.8	50	76	6	140	20	23	17	38	1.93
49008068--49008115	25	1.9	25	83	8	62	27	25	20	27	1.99
49008153--49008225	24	3.0	24	74	9	67	21	28	17	31	1.97
49008278--49008316	19	2.2	19	86	9	55	46	5	12	35	1.65
49009046--49009100	26	2.1	26	100	0	110	30	7	23	38	1.82
49010507--49010604	19	5.2	19	92	7	164	37	10	16	35	1.82
49010497--49010604	36	2.9	35	78	20	112	37	10	15	36	1.82
49013245--49013284	17	2.4	17	86	0	53	20	22	27	30	1.98
49021007--49021250	114	2.2	112	79	7	275	33	20	18	27	1.96
49024559--49024598	19	2.1	19	100	0	80	50	25	0	25	1.50
49028622--49028793	93	1.8	93	94	0	308	27	30	21	20	1.98
49028615--49028790	46	3.8	46	79	12	207	28	30	21	19	1.98
49031185--49031262	15	5.2	15	74	11	79	56	15	16	11	1.67
49033337--49033508	93	1.8	93	94	0	308	27	30	21	20	1.98
49033330--49033505	46	3.8	46	79	12	207	28	30	21	19	1.98
49037282--49037691	48	8.7	47	74	11	229	24	30	18	26	1.98
49037283--49037691	46	8.6	45	72	16	196	24	30	18	26	1.98
49037282--49037694	94	4.4	95	76	13	372	24	30	18	26	1.98
49039154--49039192	19	2.1	19	85	4	53	25	0	2	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49039465--49039789	43	7.6	43	86	0	418	24	17	27	30	1.97
49044090--49044140	25	2.1	24	86	13	70	43	9	0	47	1.36
49049271--49049340	27	2.6	27	95	2	113	31	28	12	27	1.93
49049271--49049368	28	3.5	28	90	2	135	31	28	13	26	1.94
49057129--49057198	27	2.6	27	95	2	113	31	28	12	27	1.93
49057129--49057226	28	3.5	28	90	2	135	31	28	13	26	1.94
49061435--49061542	24	4.5	24	78	0	90	28	8	18	44	1.79
49061658--49061717	26	2.3	26	88	0	93	16	18	25	40	1.91
49061717--49061901	32	5.8	32	85	2	255	22	19	20	37	1.94
49061717--49061898	64	2.8	64	89	0	292	22	19	20	37	1.94
49061719--49061916	96	2.1	95	87	2	281	22	19	19	38	1.93
49064297--49064341	18	2.5	17	82	10	54	64	2	2	31	1.18
49067520--49067595	21	3.7	21	92	3	120	36	9	14	39	1.78
49067540--49067618	21	3.6	24	89	6	91	35	8	13	41	1.76
49067889--49067918	7	4.4	7	95	4	53	30	0	0	70	0.88
49068093--49068127	17	2.1	17	89	10	54	34	11	0	54	1.37
49068287--49068344	31	1.9	31	85	3	82	32	3	3	60	1.30
49068450--49068477	14	2.0	14	100	0	56	21	0	7	71	1.09
49073555--49073786	44	5.3	44	64	8	130	25	25	25	23	2.00
49073506--49073819	88	3.6	88	87	0	432	28	27	23	21	1.99
49074260--49074381	44	2.8	44	82	2	138	31	19	19	29	1.97
49074816--49074872	21	2.7	21	94	0	96	36	8	14	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49074830--49074895	21	2.9	24	86	8	86	36	7	13	42	1.73
49075550--49075607	31	1.9	31	89	3	91	34	3	3	58	1.32
49075750--49075777	14	2.0	14	100	0	56	21	0	7	71	1.09
49092082--49093659	790	2.0	791	96	0	2942	41	19	18	20	1.91
49099643--49099693	23	2.2	23	89	0	75	27	11	21	39	1.88
49101289--49101416	56	2.4	52	83	10	154	25	30	19	25	1.98
49101289--49101413	50	2.4	50	84	10	144	24	31	20	24	1.98
49104142--49104192	23	2.2	23	89	0	75	27	7	21	43	1.80
49117229--49117294	20	3.3	20	64	8	53	31	21	33	13	1.92
49117223--49117312	40	2.2	40	94	0	153	28	21	30	20	1.98
49128363--49128400	19	2.0	19	85	10	51	21	42	0	36	1.53
49163878--49164247	124	3.0	124	88	2	555	29	16	21	32	1.95
49167369--49167436	17	3.8	17	71	16	57	48	1	5	44	1.36
49167255--49167498	116	2.1	116	94	1	427	44	6	9	39	1.63
49167493--49168464	23	43.2	23	72	16	607	26	0	24	48	1.54
49167615--49167654	18	2.2	18	100	0	80	25	0	22	52	1.47
49167628--49168461	91	9.2	91	79	12	822	26	0	25	47	1.54
49167493--49168468	68	14.5	66	75	16	621	26	0	25	47	1.54
49168056--49168124	30	2.3	30	92	0	120	27	0	24	47	1.52
49168116--49168205	44	2.2	37	71	23	90	26	0	25	47	1.52
49168339--49168468	45	2.9	45	78	12	115	26	0	25	48	1.51
49168498--49168550	25	2.3	23	78	15	63	41	15	0	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49168507--49168553	25	1.9	25	95	4	87	40	14	0	44	1.46
49168982--49169021	18	2.2	18	90	0	62	40	7	27	25	1.82
49169664--49169688	7	3.6	7	100	0	50	60	12	0	28	1.32
49170791--49170835	12	3.8	12	82	5	56	57	0	0	42	0.98
49170842--49170870	11	2.6	11	100	0	58	44	6	27	20	1.77
49171598--49171654	9	6.0	9	72	11	51	63	5	1	29	1.27
49173218--49173248	15	2.1	15	100	0	62	32	22	12	32	1.92
49181953--49181983	9	3.4	9	90	0	53	38	22	12	25	1.90
49185471--49185539	28	2.5	28	88	2	104	39	8	1	50	1.42
49185702--49185847	18	8.0	17	70	16	73	67	0	31	0	0.95
49185704--49185849	10	14.7	10	64	14	52	69	0	30	0	0.94
49185718--49185849	38	3.4	38	80	13	137	68	0	30	0	0.95
49186530--49186579	19	2.6	19	80	0	55	26	2	6	66	1.26
49186543--49186583	19	2.2	19	90	0	64	26	0	2	70	0.99
49186615--49186685	29	2.5	29	90	6	110	40	9	0	49	1.36
49186695--49186730	9	3.9	9	88	3	54	86	8	2	2	0.77
49189990--49190021	3	10.7	3	100	0	64	65	0	0	34	0.93
49190324--49190390	27	2.5	27	95	0	116	14	31	28	25	1.95
49190324--49190400	27	2.9	27	86	7	95	12	33	25	27	1.93
49190459--49190528	28	2.5	29	90	4	108	48	1	10	40	1.45
49192742--49192791	13	3.8	13	80	17	59	42	14	0	44	1.44
49195421--49195578	41	3.9	41	89	0	262	21	24	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49195859--49195905	20	2.5	20	86	6	62	27	0	23	48	1.51
49196819--49196857	19	2.1	19	95	0	69	61	5	5	28	1.39
49197220--49197401	76	2.4	77	92	3	309	43	14	10	31	1.80
49197294--49197746	115	3.9	116	90	5	706	43	15	12	28	1.83
49197640--49197827	76	2.5	76	94	3	326	44	14	10	30	1.78
49197911--49197978	22	3.0	23	76	10	68	25	47	1	26	1.61
49201712--49202031	173	1.8	173	85	4	448	21	16	31	30	1.95
49201703--49202031	43	7.6	43	85	2	401	21	16	31	31	1.95
49202095--49202136	22	1.9	22	90	0	66	40	26	21	11	1.88
49202842--49202893	21	2.5	21	87	0	77	53	11	15	19	1.71
49204581--49204631	23	2.2	23	92	0	84	27	9	21	41	1.84
49208838--49208929	29	3.3	27	75	14	80	36	2	2	58	1.22
49208822--49208883	20	3.3	19	76	17	67	38	1	1	58	1.18
49208835--49208924	30	3.1	29	79	17	91	37	2	2	57	1.23
49228528--49228911	192	2.0	191	95	0	687	32	19	13	34	1.91
49232238--49232573	41	8.2	41	82	2	334	25	18	25	30	1.98
49232749--49232932	14	12.9	14	68	15	72	23	1	28	46	1.62
49237189--49237507	43	7.4	43	82	5	324	26	16	26	31	1.97
49237243--49237507	43	6.1	43	86	4	354	25	17	27	29	1.98
49237272--49237535	130	2.0	130	80	7	295	27	17	25	29	1.97
49238642--49238718	15	5.2	15	68	13	61	41	7	23	27	1.81
49238636--49238728	30	3.1	30	93	3	152	40	6	25	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49240071--49240111	5	8.0	5	97	2	73	58	0	0	41	0.98
49243658--49243750	7	13.4	7	69	10	57	13	0	32	53	1.40
49243651--49243731	21	3.9	22	75	12	64	13	0	30	55	1.39
49243650--49243750	20	4.9	20	80	10	98	13	0	32	53	1.41
49244409--49244447	14	2.8	14	84	0	51	43	25	2	28	1.68
49244430--49244482	21	2.5	21	77	17	56	49	24	3	22	1.66
49244544--49244628	21	4.1	20	69	14	55	48	31	1	18	1.56
49244771--49244813	20	2.1	21	86	4	61	41	30	2	25	1.68
49244783--49244874	28	3.4	27	75	15	75	46	31	0	21	1.52
49244783--49244827	15	3.2	15	75	12	51	44	28	0	26	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221