Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  113  of  221  ( 26413 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34638303--34638338
15
2.3
16
90
4
56
66
11
0
22
1.22
34638729--34638782
21
2.5
21
93
3
90
62
5
1
29
1.28
34638692--34638766
29
2.6
29
81
8
82
64
5
2
28
1.29
34640446--34640731
84
3.3
84
74
10
299
28
24
19
27
1.99
34640480--34640943
44
10.7
44
69
12
217
27
23
19
29
1.98
34640489--34640949
218
2.1
218
87
0
645
27
22
19
29
1.98
34652901--34652936
15
2.3
16
90
4
56
66
11
0
22
1.22
34653038--34653090
24
2.2
24
83
12
65
69
5
5
18
1.28
34653295--34653338
23
1.9
23
85
0
61
61
2
2
34
1.21
34653287--34653361
29
2.6
30
83
8
84
62
4
2
30
1.27
34659445--34659499
24
2.2
26
81
12
71
45
0
1
52
1.11
34659637--34659731
45
2.1
45
88
1
138
32
27
5
34
1.79
34659712--34659779
16
4.2
16
96
0
118
35
36
0
27
1.58
34661849--34661904
20
2.6
22
83
13
80
42
8
16
32
1.79
34674220--34674246
14
1.9
14
100
0
54
40
29
7
22
1.81
34677040--34677148
42
2.6
42
94
0
191
19
29
25
25
1.98
34694372--34694606
117
2.0
118
88
2
348
43
16
13
26
1.85
34694660--34694713
27
2.0
27
92
0
90
37
3
12
46
1.60
34717023--34717059
11
3.4
11
96
0
65
40
5
0
54
1.24
34716983--34717084
51
2.0
52
88
1
152
38
3
0
57
1.17
34716975--34717084
40
2.7
41
84
9
129
37
3
0
59
1.15
34716974--34717078
22
5.2
20
68
20
76
34
3
0
61
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34717023--34717084
11
5.9
11
76
12
60
43
3
0
53
1.17
34717761--34717798
11
3.4
11
85
7
58
23
10
7
57
1.58
34717763--34717795
12
2.8
12
90
4
50
27
12
3
57
1.49
34717798--34717825
14
2.0
14
100
0
56
14
21
21
42
1.88
34717786--34717897
58
1.9
59
87
5
165
15
17
16
50
1.79
34718395--34718437
12
3.6
12
90
0
68
20
11
13
53
1.71
34718466--34718495
12
2.5
12
94
0
51
23
6
13
56
1.60
34718526--34718555
12
2.5
12
94
0
51
23
6
13
56
1.60
34718407--34718577
60
2.9
59
96
1
315
20
11
11
56
1.65
34723488--34723537
3
16.7
3
100
0
100
32
0
0
68
0.90
34724103--34724135
17
1.9
17
88
11
50
27
3
6
63
1.32
34724570--34724659
7
12.9
7
80
4
83
28
22
0
48
1.50
34724563--34724630
21
3.2
21
77
8
75
30
22
0
47
1.52
34724562--34724696
35
3.9
34
72
13
94
28
25
1
43
1.63
34724684--34724708
7
3.6
7
100
0
50
44
12
0
44
1.41
34726964--34727032
25
2.7
25
82
8
77
26
18
5
49
1.70
34732864--34732895
15
2.1
15
100
0
64
25
0
6
68
1.12
34736672--34736731
29
2.1
29
100
0
120
40
6
20
33
1.78
34739597--34739652
24
2.3
24
82
14
62
30
3
16
50
1.62
34739651--34739739
27
3.3
27
98
0
169
29
12
17
40
1.86
34740084--34740122
19
1.9
19
85
10
51
28
5
17
48
1.68
34741145--34741207
28
2.2
28
85
0
90
34
22
12
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34742777--34742807
16
1.9
16
93
0
53
58
0
16
25
1.38
34757365--34757406
18
2.3
18
80
8
50
71
7
0
21
1.09
34758724--34758761
19
2.1
19
85
5
51
60
5
7
26
1.46
34759229--34759296
30
2.3
30
82
5
75
48
10
2
38
1.52
34760586--34760642
30
1.9
30
82
7
71
45
3
0
50
1.18
34764942--34764971
6
5.0
6
100
0
60
33
0
16
50
1.46
34767315--34767518
83
2.5
82
91
3
320
51
15
6
25
1.68
34767595--34768051
159
2.9
154
81
6
508
33
14
16
35
1.89
34773060--34773374
41
7.7
41
91
0
468
23
27
20
28
1.99
34780912--34780950
19
2.0
21
85
10
55
38
17
30
12
1.88
34781455--34781498
15
2.8
16
82
10
54
50
11
0
38
1.39
34787848--34787915
34
2.0
34
91
0
109
30
7
17
44
1.76
34788121--34788373
127
2.0
126
98
0
488
33
13
13
39
1.84
34793627--34793688
29
2.1
29
90
0
97
19
25
17
37
1.94
34800930--34800996
27
2.5
27
78
7
64
20
25
25
28
1.99
34804938--34805094
48
3.3
48
91
3
219
33
8
11
46
1.71
34815442--34815475
17
2.0
17
88
0
50
44
14
0
41
1.45
34818840--34819024
46
4.0
46
97
0
343
28
28
9
33
1.88
34819777--34819818
17
2.6
16
85
7
57
52
19
0
28
1.46
34827496--34827549
24
2.2
24
78
18
58
40
0
20
38
1.53
34828283--34828397
41
2.8
41
89
0
167
31
19
20
28
1.97
34835210--34835286
37
2.1
37
97
0
145
46
14
10
28
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34840526--34840550
7
3.6
7
100
0
50
60
0
0
40
0.97
34851057--34851123
33
2.0
33
94
5
118
41
23
14
19
1.89
34853189--34853221
15
2.2
15
94
0
57
18
33
12
36
1.88
34873007--34873087
29
2.8
28
81
5
81
34
16
11
38
1.84
34876605--34876729
56
2.2
56
90
2
189
43
7
12
36
1.71
34876723--34876785
23
2.7
23
87
4
92
31
1
20
46
1.61
34876752--34877384
29
21.1
29
82
10
708
31
0
24
43
1.61
34876765--34877375
63
10.1
63
80
13
705
32
0
23
43
1.61
34877209--34877384
28
6.5
26
75
17
112
28
0
26
44
1.59
34877316--34877365
26
2.0
25
92
4
82
16
2
34
48
1.57
34879531--34879563
14
2.3
15
89
5
50
66
6
0
27
1.15
34879669--34879718
10
4.8
10
78
7
55
56
2
0
42
1.11
34879656--34879720
31
2.1
31
88
5
96
61
1
0
36
1.05
34879664--34879707
21
2.1
21
91
4
72
63
0
0
36
0.95
34879716--34879749
17
1.9
18
88
5
52
64
0
11
23
1.26
34883688--34883786
26
3.6
25
67
27
65
7
10
5
77
1.10
34883706--34883769
17
3.7
17
76
17
69
6
10
3
79
1.02
34883679--34883848
25
7.0
23
69
19
71
8
10
4
77
1.12
34883706--34883856
34
4.6
35
74
21
157
8
9
3
78
1.08
34883765--34883863
36
2.8
34
86
8
128
11
8
3
77
1.08
34883739--34883847
26
4.2
25
74
12
87
8
10
3
77
1.09
34884062--34884105
11
4.1
10
83
13
52
77
2
9
11
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34890235--34890286
21
2.4
21
87
6
68
51
1
1
44
1.23
34890241--34890298
21
2.7
22
77
17
68
53
3
1
41
1.28
34890356--34890421
22
2.9
23
75
4
71
57
3
0
39
1.14
34890370--34890444
22
3.3
22
75
10
71
57
2
0
40
1.13
34890356--34890444
45
2.0
46
82
6
110
56
3
0
40
1.16
34890412--34890437
13
2.0
13
100
0
52
53
7
0
38
1.30
34890374--34890444
23
3.2
22
75
16
67
57
2
0
39
1.13
34892321--34892436
25
4.7
24
82
9
135
14
29
21
34
1.93
34894704--34894757
26
2.1
26
100
0
108
42
3
18
35
1.68
34894924--34894972
22
2.3
22
85
3
64
22
14
22
40
1.90
34900004--34900085
26
3.0
27
75
12
87
43
1
2
52
1.22
34900139--34900173
18
2.0
17
88
5
52
45
0
0
54
0.99
34900088--34900310
120
1.9
119
95
0
401
45
1
5
47
1.34
34900259--34900293
18
2.0
17
88
5
52
45
0
0
54
0.99
34900259--34900313
15
3.4
16
80
16
53
47
0
1
50
1.11
34900247--34900562
156
2.0
157
95
0
571
48
5
3
43
1.41
34900614--34900704
45
2.0
45
85
2
121
37
28
6
27
1.82
34900685--34900720
16
2.2
16
100
0
72
38
36
0
25
1.56
34904106--34904180
39
1.9
39
100
0
150
33
22
16
28
1.95
34904142--34904292
51
3.0
51
93
0
257
28
23
16
31
1.96
34908282--34908322
13
3.2
13
82
0
55
36
0
2
60
1.10
34908470--34908496
12
2.2
12
100
0
54
70
0
0
29
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34908562--34908634
11
6.5
11
77
12
51
65
26
4
4
1.28
34908562--34908634
34
2.1
34
85
5
94
65
26
4
4
1.28
34914085--34914119
17
2.1
17
94
5
63
54
5
11
28
1.59
34916017--34916065
22
2.2
22
88
0
71
36
22
4
36
1.73
34934323--34934357
17
2.1
17
89
10
54
71
5
2
20
1.19
34934720--34934792
22
3.4
22
70
14
62
58
2
4
34
1.31
34937386--34937410
7
3.6
7
100
0
50
28
0
16
56
1.41
34938062--34938101
18
2.2
18
95
0
71
22
30
7
40
1.81
34938530--34938647
25
4.9
25
75
14
131
41
0
13
44
1.44
34938520--34938653
70
1.9
71
98
1
261
39
0
12
47
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221