genome.fa.s26.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  102  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31413882--31414268	44	8.7	44	75	2	342	24	21	25	29	1.99
31413876--31414282	89	4.6	89	85	1	555	23	21	24	29	1.99
31414561--31414612	24	2.2	24	92	0	86	34	23	7	34	1.83
31415493--31415545	19	2.7	19	80	16	63	0	18	3	77	0.92
31422469--31422572	9	11.6	9	91	0	154	24	9	26	39	1.86
31422469--31422572	27	3.9	27	90	0	172	24	9	26	39	1.86
31428978--31429072	45	2.1	45	86	0	136	27	16	23	32	1.96
31436968--31437143	89	2.0	87	86	4	246	34	21	9	34	1.85
31437473--31437593	56	2.1	57	84	6	156	28	5	4	61	1.38
31437715--31437945	89	2.5	92	73	13	244	33	9	18	38	1.83
31438911--31438955	19	2.2	20	84	7	56	51	2	0	46	1.13
31448571--31449142	68	8.4	68	83	0	649	32	18	23	25	1.97
31448571--31449142	136	4.2	136	85	0	714	32	18	23	25	1.97
31451462--31451649	40	4.7	40	95	0	313	22	26	20	30	1.98
31460674--31460722	21	2.4	19	78	18	53	26	14	18	40	1.89
31460679--31460724	21	2.1	21	88	8	65	26	15	17	41	1.88
31462561--31462599	6	6.3	6	82	5	51	17	20	0	61	1.34
31462555--31462599	12	3.7	12	85	5	63	17	22	2	57	1.50
31462627--31462656	15	2.0	15	93	0	51	13	23	3	60	1.48
31463690--31464151	239	1.9	239	88	0	701	29	8	25	36	1.86
31466722--31466767	21	2.3	20	78	14	51	30	6	17	45	1.73
31470601--31470730	53	2.4	55	81	7	149	69	5	13	11	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31471613--31471655	13	3.2	14	87	6	54	65	2	16	16	1.38
31471613--31471655	7	6.4	7	78	10	54	65	2	16	16	1.38
31471613--31471655	20	2.2	20	87	8	61	65	2	16	16	1.38
31472870--31473454	87	6.7	87	90	0	888	29	23	23	23	1.99
31473473--31473852	100	3.8	99	88	3	487	31	24	20	23	1.98
31473473--31473848	50	7.5	50	74	4	310	31	24	20	23	1.98
31474214--31474273	15	4.1	15	80	8	70	35	41	8	15	1.77
31475387--31475435	20	2.5	20	78	15	57	38	4	0	57	1.18
31483559--31483608	23	2.2	23	85	3	66	42	4	8	46	1.52
31485348--31485387	18	2.3	18	86	4	55	27	0	0	72	0.85
31485454--31485496	22	2.0	22	95	0	77	30	11	6	51	1.65
31486309--31486350	19	2.4	17	88	11	59	59	0	0	40	0.97
31486608--31486658	16	3.2	16	86	5	68	39	1	27	31	1.68
31486823--31486870	20	2.3	21	85	7	62	58	0	0	41	0.98
31486888--31486946	24	2.5	24	80	2	66	55	3	1	38	1.26
31491489--31491549	30	2.0	30	96	0	113	26	21	16	36	1.94
31493814--31493842	12	2.3	13	94	5	51	65	6	6	20	1.40
31500912--31500963	19	2.8	19	72	16	56	25	13	17	44	1.85
31505953--31506009	19	3.1	19	71	19	66	26	12	15	45	1.82
31507819--31507881	19	3.5	18	78	12	67	4	17	3	74	1.12
31507819--31507888	35	2.1	33	81	10	79	4	17	2	75	1.08
31509864--31509968	9	11.6	9	71	17	67	68	0	1	28	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509880--31509982	20	5.4	20	72	18	69	67	0	0	30	1.03
31509864--31509984	28	4.4	27	76	14	99	69	0	1	28	1.04
31509917--31509984	8	7.8	8	75	18	64	70	1	1	26	1.04
31509919--31509984	9	7.3	9	73	17	57	71	1	1	25	1.04
31509917--31509984	17	3.8	18	79	12	77	70	1	1	26	1.04
31511811--31512260	229	2.0	228	97	0	846	30	15	16	38	1.89
31515655--31515700	18	2.6	18	82	6	58	30	2	0	67	1.03
31521671--31521699	9	3.2	9	100	0	58	31	10	10	48	1.71
31522328--31522427	19	5.1	19	75	20	107	57	12	1	30	1.42
31522328--31522428	21	5.1	20	78	14	104	57	11	0	29	1.41
31524423--31524522	49	2.0	50	90	1	157	35	7	12	46	1.68
31525151--31525251	51	2.0	51	98	0	193	29	13	23	32	1.94
31527773--31527836	29	2.2	28	78	8	74	51	9	6	32	1.59
31527893--31527947	20	2.8	20	85	0	74	43	3	12	40	1.60
31542113--31542156	17	2.6	17	82	7	54	31	2	0	65	1.05
31548043--31548071	9	3.2	9	100	0	58	31	10	10	48	1.71
31548700--31548799	19	5.1	19	75	20	107	57	12	1	30	1.42
31548700--31548800	21	5.1	20	78	14	104	57	11	0	29	1.41
31550791--31550890	49	2.0	50	90	1	157	35	7	12	46	1.68
31551518--31551618	51	2.0	51	98	0	193	29	13	23	32	1.94
31554252--31554315	29	2.2	28	78	8	74	51	9	6	32	1.59
31554372--31554426	20	2.8	20	85	0	74	43	3	12	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31555704--31555746	20	2.1	21	86	4	61	32	23	9	34	1.87
31556267--31556305	13	3.2	12	86	13	53	33	0	7	58	1.26
31557105--31557149	24	2.0	23	83	16	58	28	8	13	48	1.72
31561003--31561110	40	2.7	41	79	11	116	36	13	17	32	1.89
31562623--31562662	20	2.0	21	85	14	57	27	0	37	35	1.57
31565110--31565138	15	1.9	15	100	0	58	79	0	20	0	0.74
31565805--31565853	25	2.0	25	83	0	62	38	0	16	44	1.48
31566321--31566366	20	2.4	19	88	3	65	47	0	26	26	1.52
31571215--31571260	20	2.3	20	100	0	92	30	8	8	52	1.62
31572495--31572535	20	2.0	20	86	9	57	53	17	21	7	1.67
31577141--31577246	37	2.9	37	86	0	149	34	21	13	30	1.92
31587736--31587803	25	2.7	26	78	17	79	63	0	1	35	1.04
31588095--31588124	14	2.2	14	94	5	53	30	0	0	70	0.88
31589157--31589247	30	3.1	29	79	3	83	43	2	3	50	1.30
31589204--31589242	20	1.9	21	84	5	53	43	0	2	53	1.14
31589190--31589247	29	2.0	29	86	3	80	41	0	3	55	1.17
31611063--31611122	25	2.3	26	88	2	95	31	23	10	35	1.88
31625944--31626121	27	6.6	26	82	6	178	26	15	28	28	1.96
31625944--31626121	54	3.3	54	81	8	200	26	15	28	28	1.96
31625945--31626100	82	1.9	81	85	6	217	26	16	28	28	1.97
31625941--31626121	82	2.2	81	81	4	213	27	16	28	28	1.97
31630418--31630445	14	2.0	14	100	0	56	42	14	14	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31644287--31644361	36	2.1	36	97	0	141	28	25	22	24	2.00
31646243--31646304	29	2.1	29	93	0	106	19	30	32	17	1.95
31651076--31651201	50	2.5	50	75	6	119	34	11	26	26	1.91
31651425--31651497	27	2.6	28	76	8	78	28	20	27	23	1.99
31654259--31654387	60	2.2	60	84	2	161	39	24	12	24	1.89
31654253--31654386	30	4.5	30	74	3	108	40	23	12	23	1.89
31670167--31670214	19	2.4	20	83	16	64	43	6	10	39	1.64
31673266--31673443	27	6.6	26	81	8	171	27	15	28	28	1.96
31673266--31673443	54	3.3	54	80	11	193	27	15	28	28	1.96
31673267--31673422	82	1.9	81	85	6	217	27	15	28	28	1.96
31673263--31673443	82	2.2	81	81	4	213	27	15	28	28	1.96
31676004--31676059	28	2.0	28	100	0	112	32	7	21	39	1.80
31677229--31677272	22	2.0	22	86	0	61	43	9	0	47	1.35
31677659--31677715	29	1.9	30	89	3	89	33	1	10	54	1.45
31678576--31678641	27	2.5	27	85	7	82	25	1	22	50	1.58
31678933--31678997	32	2.1	31	82	8	78	29	13	16	40	1.88
31679255--31679283	14	2.1	14	100	0	58	44	20	20	13	1.85
31686350--31686411	30	2.1	30	93	0	106	24	11	19	45	1.83
31686536--31686610	35	2.1	35	97	0	141	40	34	13	12	1.81
31696521--31696582	28	2.2	28	91	0	97	37	20	17	24	1.94
31696780--31696835	29	1.9	29	96	0	103	37	10	7	44	1.67
31701084--31701110	13	2.1	13	100	0	54	29	0	7	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31701164--31701206	20	2.0	22	86	8	63	58	0	2	39	1.11
31701139--31701313	92	1.9	90	80	9	201	49	3	3	43	1.36
31701785--31701826	20	2.0	21	82	13	52	19	11	2	66	1.34
31703315--31703380	33	2.0	33	100	0	132	36	12	12	39	1.80
31713926--31714109	50	3.7	50	89	2	280	22	14	24	39	1.91
31713921--31714119	25	8.0	25	73	6	161	22	13	24	39	1.90
31713916--31714129	100	2.1	100	83	6	281	24	12	24	38	1.90
31714071--31714129	25	2.4	25	76	0	64	27	11	25	35	1.91
31717137--31717240	47	2.2	48	87	1	147	36	18	17	27	1.93
31719201--31719248	22	2.2	22	84	0	60	39	22	12	25	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221