genome.fa.s26.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  192  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56496050--56496153	40	2.6	40	95	1	183	20	30	16	32	1.94
56496060--56496125	20	3.3	20	66	8	62	18	34	15	31	1.92
56496871--56496990	54	2.2	54	88	2	179	24	26	30	19	1.98
56498401--56498439	14	2.8	14	92	0	60	30	20	10	38	1.86
56499198--56499259	31	2.0	31	81	3	72	43	14	6	35	1.71
56499207--56499289	31	2.7	31	79	5	89	44	13	6	36	1.68
56501345--56501652	106	2.9	104	81	4	334	45	19	12	21	1.84
56520514--56520555	21	2.0	21	90	0	66	30	26	11	30	1.92
56521967--56521996	14	2.1	14	93	0	51	20	13	13	53	1.72
56522027--56522088	30	2.1	30	90	0	97	25	4	12	56	1.56
56522113--56522215	54	1.9	54	97	0	197	29	5	12	52	1.62
56538337--56538385	10	4.2	12	75	17	50	16	0	8	75	1.03
56539371--56539802	132	3.3	131	91	1	666	30	18	25	25	1.98
56539783--56539982	45	4.4	45	88	0	274	29	15	23	31	1.95
56549072--56549487	208	2.0	208	100	0	832	24	17	26	31	1.97
56549667--56549780	45	2.5	45	89	0	174	31	14	24	28	1.95
56549670--56549799	45	2.9	45	85	0	170	30	17	23	29	1.97
56552782--56552921	44	2.9	49	75	16	130	33	19	20	27	1.96
56552827--56553119	44	6.6	44	72	10	202	30	21	21	26	1.98
56555310--56555610	107	2.8	108	91	2	466	31	16	17	34	1.93
56558776--56558854	19	4.0	19	74	16	63	31	6	2	59	1.36
56558834--56558883	26	1.9	26	84	8	66	48	2	2	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56563365--56563390	13	2.0	13	100	0	52	30	30	0	38	1.58
56563711--56563756	6	7.3	6	82	7	56	45	17	19	17	1.85
56563737--56563888	45	3.4	45	90	0	241	42	21	17	19	1.90
56566144--56566202	30	1.9	31	86	3	84	28	22	1	47	1.61
56566144--56566212	30	2.3	31	82	7	79	28	20	4	46	1.70
56578178--56578205	14	2.0	14	100	0	56	35	7	14	42	1.73
56579326--56579394	23	3.0	23	82	4	77	37	20	10	31	1.86
56579354--56579414	24	2.6	24	89	2	88	47	19	4	27	1.70
56579355--56579712	69	5.2	68	87	1	437	45	18	8	27	1.78
56579354--56579626	24	11.8	23	66	13	87	46	19	7	27	1.76
56580521--56580674	41	3.8	41	75	5	141	33	27	18	20	1.96
56590147--56590171	3	8.3	3	100	0	50	68	0	0	32	0.90
56596630--56596659	3	10.0	3	92	0	51	30	0	3	66	1.07
56597575--56597624	17	2.9	17	88	8	66	6	30	0	64	1.18
56598681--56598758	31	2.5	30	79	6	84	46	12	12	28	1.79
56599185--56599235	21	2.4	21	87	6	68	64	3	1	29	1.22
56600410--56600468	29	2.0	29	86	0	82	37	32	6	23	1.81
56602823--56602851	3	9.7	3	100	0	58	34	0	0	65	0.93
56603235--56603268	17	2.0	17	88	11	52	76	0	23	0	0.79
56606257--56606308	27	1.9	27	96	0	95	21	26	15	36	1.93
56606462--56606496	3	11.7	3	100	0	70	68	31	0	0	0.90
56606622--56606661	11	3.7	11	86	6	64	0	30	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56606624--56606662	21	1.9	20	94	5	69	0	30	0	69	0.89
56606746--56606818	27	2.7	27	91	4	112	12	31	26	30	1.92
56606879--56606923	22	2.0	22	100	0	90	55	0	8	35	1.31
56610725--56610875	26	6.2	23	76	13	99	60	4	5	28	1.40
56610824--56610872	21	2.3	21	85	3	62	63	4	4	28	1.31
56610757--56610991	26	8.9	26	71	15	135	61	5	5	27	1.42
56610846--56611001	56	2.8	54	72	10	136	62	4	5	26	1.37
56611051--56611122	29	2.4	29	80	15	85	66	0	5	27	1.13
56612535--56612586	16	3.2	16	72	5	50	53	9	5	30	1.57
56612530--56612642	34	3.3	33	80	12	97	48	12	7	30	1.69
56612586--56612936	17	19.9	17	69	16	182	45	9	13	30	1.77
56613042--56613084	21	2.0	22	86	8	63	41	9	13	34	1.77
56613436--56613505	15	4.6	14	79	13	68	0	18	0	81	0.69
56613436--56613505	11	6.9	10	81	13	63	0	18	0	81	0.69
56613436--56613507	32	2.3	30	79	11	83	0	19	0	80	0.71
56613785--56613830	3	15.0	3	82	13	58	0	36	0	63	0.95
56613799--56613827	10	2.9	10	100	0	58	0	37	0	62	0.96
56613785--56613830	13	3.7	13	81	18	62	0	36	0	63	0.95
56614199--56614315	30	3.9	29	77	11	94	44	3	22	29	1.69
56614214--56614315	30	3.4	30	84	2	134	44	3	22	29	1.71
56614587--56614804	54	4.1	55	87	8	315	37	16	16	29	1.91
56614783--56614817	14	2.5	14	90	0	52	60	2	17	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56614870--56614904	14	2.5	14	90	0	52	60	2	17	20	1.49
56614748--56615260	87	5.7	87	76	12	471	38	18	17	26	1.92
56614786--56615150	192	1.9	192	88	3	547	37	18	17	26	1.93
56614992--56615239	85	2.8	87	81	10	308	36	18	18	26	1.94
56615152--56615185	16	2.1	16	88	0	50	64	5	11	17	1.45
56614992--56615246	91	2.9	88	83	9	324	36	18	18	26	1.94
56614751--56615259	279	1.8	277	86	5	747	38	18	16	26	1.92
56615291--56615436	73	2.0	74	89	1	222	33	19	13	32	1.91
56615259--56615454	73	2.7	70	81	9	216	37	19	13	29	1.90
56615204--56616586	192	7.2	192	98	0	2635	35	20	13	29	1.91
56616099--56616325	122	1.9	122	83	3	296	34	21	14	30	1.92
56615204--56616586	383	3.6	384	98	0	2635	35	20	13	29	1.91
56625796--56626788	193	5.2	192	98	0	1896	30	13	20	35	1.91
56626058--56626286	122	1.9	122	84	5	309	30	13	20	35	1.91
56626174--56626355	71	2.6	68	82	7	204	29	14	21	34	1.93
56626636--56626952	121	2.6	123	91	3	521	27	14	21	36	1.92
56626936--56626969	16	2.1	17	88	5	52	17	11	5	64	1.45
56626875--56627283	189	2.2	183	82	8	476	27	17	18	37	1.92
56626875--56627133	91	2.9	88	81	10	300	27	17	18	37	1.93
56627227--56627441	54	4.0	55	88	8	318	29	16	17	36	1.92
56627720--56627821	30	3.4	30	84	2	134	29	22	3	44	1.71
56628203--56628251	21	2.4	21	86	3	73	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56628205--56628250	24	2.0	23	91	4	74	71	0	28	0	0.86
56628341--56628372	6	5.3	6	100	0	64	84	15	0	0	0.63
56628532--56628601	15	4.5	15	73	16	63	80	0	20	0	0.72
56628544--56628603	13	4.5	13	71	12	50	78	0	21	0	0.75
56628537--56628597	31	1.9	30	87	9	86	78	0	21	0	0.75
56628738--56628786	16	2.9	16	84	9	53	26	0	0	73	0.83
56628951--56628993	22	2.0	22	86	8	63	34	13	9	41	1.77
56629107--56629457	17	20.0	18	68	18	154	30	13	10	46	1.76
56629098--56629411	17	17.9	17	69	14	176	30	13	10	45	1.77
56629108--56629411	36	8.6	36	75	11	149	29	14	10	45	1.78
56630009--56630298	46	6.6	46	83	9	347	28	22	14	33	1.94
56630144--56630216	36	2.0	36	94	0	128	28	20	13	36	1.91
56630098--56630262	82	2.0	82	91	0	267	30	21	13	35	1.91
56630052--56630298	128	1.9	128	89	0	386	29	21	14	34	1.93
56632949--56632997	25	1.9	26	83	4	64	14	2	32	51	1.54
56633225--56633894	44	14.8	44	69	11	244	30	21	17	30	1.96
56633414--56633896	45	10.7	44	71	10	296	32	21	16	30	1.95
56633264--56633534	143	1.9	142	85	0	371	28	22	19	29	1.98
56633235--56633910	181	3.7	181	86	2	845	30	21	17	30	1.96
56633512--56633810	92	3.3	91	72	12	297	32	19	16	31	1.94
56639972--56640020	21	2.3	21	82	10	55	61	4	4	30	1.33
56639870--56640162	26	11.2	25	72	15	141	60	4	5	29	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56639897--56640077	101	1.8	97	82	9	231	61	4	4	28	1.36
56639994--56640228	27	8.4	27	73	14	174	61	4	4	29	1.35
56640043--56640226	85	2.2	85	98	0	359	62	4	4	28	1.33
56640100--56640231	58	2.4	53	76	10	138	62	3	3	29	1.30
56640100--56640234	56	2.4	56	80	7	150	63	3	3	28	1.28
56640286--56640357	29	2.4	29	80	15	85	66	0	5	27	1.13
56645217--56645285	34	2.0	34	94	0	120	15	10	17	56	1.66
56648242--56648267	11	2.4	11	100	0	52	38	7	0	53	1.30
56648225--56648334	40	2.7	40	91	5	168	32	2	0	63	1.15
56648647--56648707	30	2.0	31	83	6	79	49	0	31	19	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221