genome.fa.s26.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  133  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40980202--40980293	19	4.8	19	83	0	130	38	9	16	35	1.82
40980202--40980294	38	2.4	38	89	0	150	38	9	16	35	1.81
40980504--40980548	23	2.0	23	81	0	54	22	0	15	62	1.33
40980774--40980814	3	13.7	3	100	0	82	34	0	0	65	0.93
40987504--40987555	27	1.9	28	84	7	72	53	13	13	19	1.72
40994294--40994355	29	2.2	29	97	2	117	43	22	20	12	1.86
40995308--40995431	25	5.0	25	69	7	76	31	22	25	20	1.98
40995385--40995444	26	2.3	26	82	0	84	36	21	23	18	1.95
41002436--41002492	27	2.2	26	84	6	78	68	3	1	26	1.15
41005320--41005383	31	2.1	31	96	0	119	48	21	7	21	1.75
41009755--41009827	21	3.6	19	78	10	65	47	1	0	50	1.09
41013361--41013393	16	2.1	16	100	0	66	24	24	15	36	1.93
41018685--41018738	24	2.2	24	83	0	63	50	5	3	40	1.44
41018979--41019020	20	2.1	20	82	8	50	11	30	2	54	1.49
41021784--41021855	26	2.8	25	83	6	90	41	11	15	31	1.82
41035947--41035977	15	2.1	15	93	0	53	25	3	29	41	1.71
41036480--41036654	93	1.9	93	100	0	350	30	15	19	34	1.93
41042084--41042124	21	2.0	21	100	0	82	26	14	24	34	1.94
41047615--41047706	21	4.4	20	73	10	60	15	3	36	44	1.62
41048713--41048781	27	2.6	27	85	0	93	24	7	31	36	1.83
41064592--41065094	44	11.6	44	72	7	287	28	21	25	25	1.99
41064677--41065095	131	3.2	132	84	5	469	28	22	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41064758--41065143	129	3.0	129	84	5	406	28	20	24	26	1.99
41068285--41068344	29	2.1	29	84	3	77	50	16	3	30	1.62
41070011--41070058	12	3.9	12	97	2	87	43	31	0	25	1.55
41071593--41071637	6	7.0	6	92	7	63	77	0	0	22	0.76
41076655--41076696	19	2.2	19	100	0	84	71	9	9	9	1.32
41091261--41091285	5	5.0	5	100	0	50	40	0	0	60	0.97
41092348--41092513	33	5.0	33	85	0	224	27	19	21	31	1.97
41097564--41097608	21	2.0	23	83	8	58	44	13	4	37	1.64
41098057--41098444	131	2.9	132	91	1	609	26	25	20	28	1.99
41098448--41098796	89	3.9	89	85	1	439	26	23	22	27	1.99
41098499--41098705	45	4.7	44	69	15	131	27	25	21	26	1.99
41098440--41098821	178	2.1	177	83	2	487	26	24	22	27	2.00
41098819--41099218	177	2.3	178	85	3	529	26	22	18	32	1.97
41098830--41099223	44	8.9	43	71	12	239	26	22	18	32	1.97
41100520--41100545	9	2.9	9	100	0	52	7	0	11	80	0.89
41103050--41103122	35	2.3	31	84	13	87	36	10	17	34	1.85
41111333--41111371	16	2.5	15	84	8	51	61	0	10	28	1.28
41111966--41112011	23	2.0	22	87	4	65	36	17	6	39	1.76
41120219--41120243	11	2.3	11	100	0	50	20	0	8	72	1.10
41123564--41123749	93	2.0	93	92	0	309	19	19	22	38	1.94
41124224--41124617	87	4.5	86	77	9	325	34	13	11	41	1.80
41124224--41124620	175	2.3	175	79	7	405	33	13	11	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41124334--41124617	89	3.2	87	84	4	322	33	14	11	41	1.81
41124493--41124789	161	1.9	160	81	9	367	34	12	11	42	1.78
41124627--41124791	82	2.0	84	84	2	217	32	11	11	44	1.76
41126202--41126304	50	2.0	51	81	5	120	18	33	27	21	1.96
41130028--41130082	27	2.0	27	85	0	74	30	10	29	29	1.91
41130022--41130074	18	2.9	18	77	0	61	26	11	32	30	1.91
41142045--41142138	28	3.4	28	93	0	161	27	23	27	21	1.99
41142163--41142214	21	2.5	21	93	0	86	30	44	9	15	1.78
41142455--41142682	27	8.4	27	84	7	275	18	17	18	44	1.87
41143829--41143874	13	3.5	13	90	0	74	58	10	10	19	1.61
41153161--41153205	11	4.1	11	88	0	54	22	4	6	66	1.33
41153595--41153758	66	2.5	65	89	4	238	28	20	20	30	1.98
41153595--41153760	33	5.0	32	85	5	215	28	20	19	31	1.97
41159072--41159667	27	22.3	27	84	4	661	18	16	20	43	1.88
41166499--41166586	25	3.6	24	77	18	92	28	20	26	25	1.99
41180992--41181023	15	2.1	15	100	0	64	6	6	6	81	0.99
41180995--41181033	15	2.6	15	88	8	53	5	12	5	76	1.11
41181177--41181266	46	2.0	46	95	0	162	51	5	14	28	1.65
41181695--41181746	11	4.7	11	76	6	52	21	3	1	73	1.10
41188139--41188192	22	2.5	22	96	0	99	29	16	14	38	1.89
41188493--41188546	28	2.0	28	88	3	83	42	16	7	33	1.76
41193248--41193311	20	3.3	20	74	8	71	25	10	3	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41193360--41193413	19	2.7	20	77	13	58	42	7	18	31	1.78
41193426--41193488	20	3.2	19	73	6	54	52	11	20	15	1.73
41195225--41195262	3	12.7	3	100	0	76	34	31	0	34	1.58
41195261--41195343	3	27.7	3	83	0	103	30	1	6	62	1.27
41195702--41195779	29	2.8	27	84	7	102	32	6	2	58	1.37
41200686--41200731	21	2.2	21	88	7	67	71	0	15	13	1.14
41200718--41200752	17	2.1	17	94	0	61	74	0	25	0	0.82
41202121--41202443	44	7.5	43	69	10	160	31	22	19	26	1.98
41202168--41202497	41	7.8	41	68	12	148	30	22	20	26	1.98
41202114--41202510	129	3.1	128	88	1	580	32	21	19	25	1.97
41202491--41202530	20	2.0	20	100	0	80	60	20	20	0	1.37
41202363--41202656	149	2.0	149	90	1	464	35	22	19	23	1.96
41202534--41202992	85	5.3	85	71	8	275	31	21	20	27	1.98
41202512--41203033	129	4.0	129	92	0	812	31	21	20	26	1.98
41202663--41203094	85	5.1	84	72	10	302	30	21	20	27	1.98
41202962--41203094	41	3.2	40	75	18	137	26	21	21	30	1.99
41203931--41203955	7	3.6	7	100	0	50	12	0	0	88	0.53
41204588--41204687	3	33.7	3	78	2	103	31	3	3	63	1.25
41205042--41205118	29	2.7	28	84	6	100	32	6	1	59	1.31
41206710--41206747	20	1.9	20	84	10	51	39	34	7	18	1.80
41207267--41207344	28	2.8	28	79	11	88	57	5	33	3	1.39
41207348--41207379	6	5.3	6	100	0	64	50	0	34	15	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41207876--41207929	28	1.9	28	81	7	65	44	33	3	18	1.67
41208480--41208575	28	3.4	28	85	5	140	69	4	22	3	1.20
41208495--41208582	19	5.0	17	69	24	58	69	3	22	4	1.22
41209704--41209764	28	2.2	28	87	0	86	65	6	24	3	1.32
41210944--41211027	28	3.0	28	87	0	123	59	7	29	3	1.41
41211913--41211996	28	3.0	27	86	6	123	61	4	29	3	1.33
41215583--41215685	28	3.7	28	78	0	107	65	9	23	1	1.33
41215637--41215680	13	3.2	13	78	12	52	63	9	27	0	1.24
41225268--41225449	40	4.6	39	85	5	222	34	18	29	18	1.95
41225259--41225449	80	2.4	80	85	1	258	35	17	28	18	1.94
41225910--41225937	14	2.0	14	100	0	56	42	28	0	28	1.56
41229347--41229403	25	2.3	25	100	0	114	56	24	7	12	1.61
41234933--41235078	20	7.3	20	66	6	98	30	18	34	17	1.94
41234924--41235113	40	4.8	40	85	1	240	32	18	30	18	1.95
41242130--41242283	42	3.7	42	91	3	231	31	18	16	33	1.93
41248370--41248399	12	2.5	12	94	0	51	30	13	36	20	1.90
41255940--41255991	24	2.2	24	89	0	77	11	5	7	75	1.19
41255946--41255992	24	2.0	24	95	0	85	10	4	8	76	1.13
41255947--41256002	24	2.3	25	87	6	80	10	5	8	75	1.19
41261459--41261505	21	2.2	22	84	3	60	29	12	0	57	1.36
41278036--41278105	36	1.9	36	97	0	131	48	0	7	44	1.30
41278484--41278549	27	2.4	27	92	5	107	42	9	1	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41278549--41278575	11	2.5	11	100	0	54	92	7	0	0	0.38
41278623--41278675	27	2.0	27	92	0	88	32	24	30	13	1.93
41278674--41278724	19	2.7	19	87	0	66	25	0	7	66	1.18
41278762--41278830	27	2.5	28	93	6	115	40	10	0	49	1.37
41278831--41278863	17	2.0	17	88	5	50	81	6	6	6	0.97
41279225--41279301	26	2.9	26	90	3	109	14	29	27	28	1.95
41279331--41279364	15	2.3	15	90	5	52	8	2	0	88	0.62
41279366--41279432	28	2.4	29	92	5	111	47	1	8	41	1.44
41279504--41279555	20	2.7	19	75	16	54	53	0	3	42	1.19
41282320--41282373	27	2.0	27	100	0	108	29	11	7	51	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221