genome.fa.s26.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  146  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44719053--44719088	19	1.9	18	88	5	54	47	2	8	41	1.48
44719086--44719167	40	2.0	40	81	9	96	41	10	13	34	1.79
44725718--44725746	12	2.3	13	94	5	51	65	6	6	20	1.40
44744962--44745002	12	3.3	13	80	10	50	19	2	31	46	1.63
44745582--44745634	25	2.1	25	85	0	70	22	28	33	15	1.94
44750459--44750537	12	6.3	12	78	8	68	79	5	8	6	1.04
44750459--44750549	18	4.8	18	78	10	83	79	5	7	7	1.07
44750466--44750506	21	2.0	21	95	0	73	78	7	7	7	1.11
44750491--44750537	6	7.8	6	90	0	76	82	2	12	2	0.84
44750459--44750537	6	12.7	6	80	7	50	79	5	8	6	1.04
44753093--44753149	29	1.9	30	82	3	71	19	31	29	19	1.96
44757107--44757196	37	2.5	37	87	7	125	35	26	10	27	1.88
44757415--44757659	41	6.0	41	94	0	409	23	27	18	30	1.97
44757889--44757929	17	2.5	17	88	7	59	43	14	2	39	1.59
44757882--44757929	17	2.6	18	77	12	53	43	16	2	37	1.60
44764961--44765050	37	2.5	37	87	7	125	35	26	10	27	1.88
44765273--44765433	82	2.0	82	97	0	304	23	27	19	29	1.98
44765271--44765433	41	4.0	41	90	0	263	23	27	19	29	1.98
44765656--44765699	17	2.7	17	89	6	65	43	18	2	36	1.63
44765750--44765837	43	2.0	43	100	0	176	38	15	9	36	1.80
44769858--44769931	34	2.2	34	82	4	87	28	21	22	27	1.99
44770391--44770531	27	5.2	27	84	8	180	19	18	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44770365--44770531	54	3.1	53	78	16	157	20	18	20	40	1.92
44770380--44770531	81	1.9	81	84	5	209	21	17	21	40	1.92
44771598--44771657	22	2.7	22	82	10	77	38	11	26	23	1.89
44775178--44775214	17	2.2	18	90	9	60	48	27	0	24	1.51
44775233--44775275	16	2.6	17	85	3	52	44	18	2	34	1.63
44776163--44776228	33	2.0	33	88	5	98	24	1	51	22	1.57
44776407--44776511	51	2.1	51	94	0	183	27	10	27	34	1.90
44782089--44782480	71	5.5	71	80	4	342	38	23	16	21	1.92
44782094--44782480	142	2.7	141	81	1	416	38	24	16	20	1.92
44786130--44786177	25	1.9	25	84	16	64	29	8	2	60	1.37
44791529--44791593	32	2.0	32	100	0	130	16	9	18	55	1.67
44791815--44791897	30	2.8	29	78	5	85	53	1	0	45	1.08
44799060--44799576	44	11.7	44	75	7	357	29	20	17	32	1.96
44799058--44799318	136	1.9	136	85	1	362	27	21	18	32	1.97
44802233--44802321	41	2.2	41	83	0	106	31	24	19	24	1.98
44810580--44810856	40	6.9	40	91	0	446	26	20	27	24	1.99
44819597--44819649	21	2.5	20	78	6	61	67	0	3	28	1.07
44821891--44821924	17	2.0	17	88	11	52	32	2	0	64	1.08
44835344--44835403	28	2.1	28	100	0	120	30	25	13	31	1.93
44838899--44838997	3	31.0	3	77	11	65	62	4	5	28	1.34
44840423--44840947	129	4.1	129	89	2	689	28	20	20	30	1.98
44840490--44840818	44	7.6	44	66	13	164	25	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44840850--44840952	44	2.3	44	81	8	111	34	16	17	31	1.92
44841359--44841587	100	2.3	100	82	3	282	28	21	19	30	1.98
44846852--44846957	3	33.3	3	76	11	61	60	4	6	28	1.42
44851213--44851271	29	2.0	30	83	3	75	32	3	11	52	1.54
44851191--44851271	31	2.7	29	78	5	90	35	3	9	50	1.53
44861274--44861376	40	2.6	40	81	3	100	29	21	23	26	1.99
44861444--44861552	40	2.7	39	85	12	141	26	26	23	22	2.00
44861856--44862044	7	26.4	7	71	12	89	21	1	31	46	1.59
44861856--44862094	14	16.7	14	70	10	117	21	0	33	44	1.58
44861889--44862050	72	2.2	72	93	1	270	20	0	32	45	1.56
44861991--44862094	7	14.6	7	75	4	55	19	0	35	45	1.51
44863542--44863580	20	2.0	20	84	0	51	12	10	28	48	1.74
44868219--44868614	43	9.3	43	85	3	541	25	16	26	31	1.96
44879214--44879270	28	2.0	28	96	0	105	29	15	10	43	1.80
44879460--44879498	16	2.4	16	95	0	69	38	7	28	25	1.83
44879481--44879568	45	2.0	44	88	6	133	30	3	28	37	1.74
44879681--44879814	57	2.3	56	82	7	144	51	4	1	42	1.31
44880383--44880473	46	2.0	46	93	0	155	48	5	2	43	1.38
44881630--44881725	31	3.1	31	90	3	156	43	14	10	31	1.79
44887251--44887367	43	2.7	43	96	1	209	9	15	11	64	1.50
44887891--44887986	31	3.1	31	95	3	174	45	13	9	31	1.75
44888592--44888622	13	2.4	13	100	0	62	41	9	9	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44892796--44892834	14	2.8	13	81	11	51	76	0	12	10	1.01
44894986--44895135	75	2.0	75	97	0	282	34	19	21	25	1.96
44898248--44898273	12	2.2	12	100	0	52	7	15	30	46	1.74
44898262--44898393	40	3.3	38	79	9	138	35	18	21	24	1.96
44898277--44898395	40	3.0	39	80	7	141	37	20	18	23	1.94
44898450--44898778	41	8.0	41	84	2	392	23	20	27	29	1.99
44899730--44899774	14	3.1	15	87	9	67	17	0	48	33	1.48
44899733--44899772	7	5.7	7	85	8	55	12	0	55	32	1.38
44899732--44899779	14	3.4	14	81	16	55	14	0	50	35	1.44
44900840--44900879	17	2.4	17	95	0	71	47	15	22	15	1.82
44902887--44903312	23	18.7	23	76	11	333	30	6	23	38	1.81
44902918--44903287	137	2.7	137	94	0	623	30	6	24	39	1.81
44903915--44904206	43	6.8	43	86	0	388	21	18	31	28	1.97
44904278--44904319	22	1.9	22	95	0	75	40	28	19	11	1.87
44906257--44906317	26	2.2	29	80	13	76	22	16	8	52	1.70
44909984--44910019	18	2.0	19	89	10	58	19	16	5	58	1.58
44911945--44911969	13	1.9	13	100	0	50	88	0	0	12	0.53
44913247--44913306	26	2.4	26	81	10	72	23	3	10	63	1.40
44925615--44925853	43	5.6	43	68	15	172	28	21	23	25	1.99
44925613--44925924	87	3.6	83	71	13	245	29	22	23	25	1.99
44925564--44925923	171	2.1	175	91	3	588	29	22	23	25	1.99
44925825--44925987	85	1.9	87	81	7	199	31	23	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44930548--44930594	19	2.5	18	86	6	58	27	21	0	51	1.48
44930569--44930654	43	2.0	43	88	4	129	22	20	1	55	1.50
44933501--44933528	7	4.0	7	100	0	56	71	0	0	28	0.86
44934224--44934297	33	2.2	32	83	6	94	35	4	2	58	1.31
44939719--44939758	15	2.7	15	88	0	62	62	7	0	30	1.23
44940101--44940157	6	9.7	6	84	3	62	49	1	5	43	1.35
44943716--44943916	100	2.0	100	94	1	350	38	18	6	36	1.77
44946375--44946403	12	2.5	12	94	5	51	44	6	0	48	1.29
44947231--44947283	26	2.0	26	88	0	79	64	3	7	24	1.37
44947595--44947697	50	2.1	50	90	0	161	51	4	11	32	1.59
44949686--44949849	43	3.9	43	82	4	181	29	14	26	29	1.95
44955492--44955554	25	2.6	25	92	2	101	15	30	11	42	1.82
44957634--44957678	21	2.1	21	87	0	63	28	17	8	44	1.79
44958955--44959152	103	1.9	102	88	9	296	36	18	17	27	1.93
44960447--44960491	21	2.2	21	84	4	56	28	13	15	42	1.85
44960472--44960614	71	2.0	70	80	9	157	30	11	19	38	1.87
44960860--44960902	22	2.0	22	100	0	86	37	4	39	18	1.72
44961110--44961171	24	2.5	24	81	2	61	35	9	19	35	1.85
44961552--44961633	39	2.1	39	86	0	110	41	10	24	23	1.86
44961567--44961650	39	2.2	39	82	0	96	44	14	19	22	1.86
44963085--44963117	16	2.1	16	100	0	66	21	12	12	54	1.69
44964429--44964482	14	4.0	13	74	9	54	70	1	7	20	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44978117--44978319	39	5.2	38	76	7	156	19	22	17	40	1.91
44978160--44978303	78	1.8	78	83	2	191	20	25	15	39	1.91
44978490--44978577	35	2.5	35	79	1	95	31	19	13	35	1.91
44978469--44978675	98	2.1	98	87	1	290	33	21	12	32	1.90
44979321--44979429	50	2.2	49	80	9	125	24	36	0	37	1.62
44981184--44981325	49	2.9	49	78	0	140	28	25	19	26	1.98
44982180--44982232	23	2.3	23	86	0	70	47	0	30	22	1.52
44986917--44987123	105	2.0	105	91	0	333	40	12	14	32	1.83
45001702--45002092	44	8.5	45	69	16	171	31	18	21	28	1.97
45001785--45002010	52	4.7	51	68	18	151	30	17	22	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221