genome.fa.s26.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  137  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42190320--42190385	28	2.4	28	89	5	107	16	36	16	30	1.91
42197888--42197976	39	2.2	40	77	16	96	4	17	4	73	1.18
42199994--42200113	41	2.9	41	83	4	145	30	23	17	29	1.97
42205566--42205657	15	5.7	15	68	18	51	4	20	2	72	1.12
42208223--42208297	24	3.2	24	72	12	68	25	14	16	44	1.85
42210333--42210528	87	2.3	88	86	5	274	39	21	9	30	1.84
42210531--42210584	7	7.9	7	75	19	51	57	0	0	42	0.98
42210563--42210618	27	2.0	28	86	3	78	57	1	3	37	1.27
42210887--42210938	20	2.7	19	76	5	68	34	1	0	63	1.06
42210849--42210939	30	3.0	30	72	12	78	31	3	2	62	1.23
42210887--42210990	39	2.6	38	82	8	102	33	3	2	59	1.30
42210925--42210999	19	3.8	20	76	11	73	33	4	4	58	1.35
42211077--42211268	86	2.3	84	80	7	235	28	8	21	41	1.82
42211099--42211271	86	2.0	88	86	2	242	31	8	21	38	1.84
42214915--42214972	21	2.9	21	79	5	66	56	3	1	37	1.26
42215321--42215364	21	2.0	22	82	8	54	36	2	0	61	1.09
42215290--42215376	30	2.9	30	76	8	86	39	3	0	57	1.16
42219403--42219487	26	3.3	26	83	9	95	43	14	15	27	1.85
42222384--42222426	14	2.9	15	83	13	54	18	16	16	48	1.81
42226221--42226262	18	2.4	18	80	11	52	30	2	0	66	1.04
42226262--42226330	29	2.3	30	75	22	74	27	5	2	63	1.31
42227877--42228061	101	1.8	102	91	3	311	23	16	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42227873--42228068	51	3.9	51	82	4	236	23	16	28	31	1.96
42227983--42228063	26	3.2	26	62	28	64	23	14	28	33	1.94
42227885--42228072	102	1.9	101	87	3	261	25	17	27	30	1.97
42228065--42228158	45	2.1	45	90	2	154	26	19	23	30	1.98
42230322--42230396	30	2.6	28	82	15	100	65	4	0	30	1.11
42230363--42230402	21	1.9	21	85	10	55	67	0	0	32	0.91
42240834--42240888	12	4.6	12	79	18	53	40	1	1	56	1.21
42240851--42240944	17	5.4	17	65	28	54	40	2	2	55	1.24
42250139--42250176	17	2.2	17	90	0	58	44	2	2	50	1.30
42259313--42259432	42	2.8	43	83	5	154	23	18	28	30	1.98
42262942--42263074	31	4.1	33	78	8	130	38	3	1	57	1.23
42262941--42263053	31	3.6	31	84	4	145	40	2	1	54	1.24
42264360--42264446	39	2.2	38	84	11	106	39	2	6	51	1.41
42273899--42273940	20	2.2	20	87	12	61	57	4	21	16	1.58
42274399--42274428	16	1.9	16	93	6	53	30	0	20	50	1.49
42280547--42280706	49	3.3	49	75	6	146	47	12	10	29	1.75
42280695--42280774	32	2.5	31	86	6	99	52	12	10	25	1.70
42284876--42285203	44	7.5	44	71	10	140	27	22	21	29	1.99
42284823--42285385	217	2.6	217	91	0	892	26	22	21	29	1.99
42284911--42285373	44	10.7	43	73	14	256	25	23	21	29	1.99
42298680--42298753	31	2.3	31	78	17	80	36	14	6	41	1.73
42298780--42298822	21	2.0	21	82	8	52	32	13	6	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42300703--42300810	55	2.0	55	83	7	139	39	13	7	38	1.73
42307355--42307403	21	2.3	21	83	13	57	0	34	0	65	0.93
42314595--42314682	31	3.0	30	82	9	83	54	2	2	40	1.25
42315394--42315487	33	2.8	33	84	6	118	35	26	8	29	1.86
42315789--42315814	2	13.0	2	100	0	52	50	50	0	0	1.00
42316427--42316605	71	2.5	71	81	4	198	31	22	17	27	1.97
42319014--42319054	21	1.9	22	85	14	59	73	0	0	26	0.84
42328083--42328378	84	3.5	84	95	0	520	35	25	16	21	1.95
42328038--42328378	42	8.1	42	79	8	370	35	26	17	21	1.95
42328383--42328463	26	3.2	26	64	28	64	34	29	13	22	1.92
42332260--42332345	10	9.0	10	66	23	51	52	1	0	46	1.08
42332242--42332347	34	3.2	33	81	10	144	53	0	0	44	1.13
42332263--42332365	32	3.2	31	77	13	109	55	0	0	43	1.06
42332347--42332460	59	2.0	57	85	3	156	43	0	1	53	1.17
42332373--42332546	87	2.0	86	95	3	316	39	0	1	58	1.13
42332414--42332537	30	4.2	29	70	15	94	39	0	2	57	1.18
42332726--42332793	16	4.3	15	75	17	57	30	22	1	45	1.61
42332726--42332793	32	2.1	32	83	0	82	30	22	1	45	1.61
42333256--42333307	15	3.2	15	73	19	50	46	0	0	53	1.00
42333269--42333305	19	1.9	19	88	0	56	51	0	0	48	1.00
42333340--42333364	13	1.9	13	100	0	50	48	0	0	52	1.00
42352781--42352823	18	2.4	18	80	0	50	60	2	0	37	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42358724--42358752	8	3.6	8	100	0	58	44	0	27	27	1.54
42359352--42359500	33	4.5	33	94	1	230	25	20	24	30	1.99
42371013--42371072	29	2.1	29	93	0	102	43	10	8	38	1.68
42371014--42371067	16	3.6	16	65	14	51	42	9	9	38	1.69
42371108--42371153	21	2.2	21	96	0	83	28	4	15	52	1.61
42381211--42381441	50	4.6	50	83	1	259	26	22	29	20	1.98
42389728--42389906	24	7.3	24	75	3	151	27	20	21	30	1.98
42389752--42389905	24	6.3	24	79	3	157	27	19	22	30	1.98
42389730--42389906	49	3.6	49	89	2	248	27	20	21	30	1.98
42392518--42392561	5	8.8	5	94	0	70	20	54	0	25	1.45
42395764--42395826	30	2.1	29	82	2	72	23	14	15	46	1.83
42399371--42399395	10	2.5	10	100	0	50	48	0	8	44	1.32
42399378--42399521	56	2.5	57	75	12	152	48	7	9	34	1.63
42399491--42399545	26	2.1	26	100	0	110	60	7	7	25	1.49
42399547--42400114	28	19.4	28	82	11	631	25	0	24	49	1.53
42399547--42400131	89	6.6	89	90	5	834	24	0	24	49	1.53
42399547--42400131	177	3.3	177	89	4	848	24	0	24	49	1.53
42399547--42400131	62	9.9	62	81	11	532	24	0	24	49	1.53
42400192--42400240	25	1.9	25	87	4	71	38	16	4	40	1.67
42400355--42400406	24	2.2	24	89	0	77	1	23	32	42	1.65
42400661--42400706	18	2.6	18	82	0	56	39	8	30	21	1.84
42401351--42401380	7	4.4	7	95	4	53	60	10	0	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42402394--42402457	30	2.1	31	91	2	103	64	0	0	35	0.94
42402451--42402526	40	1.9	40	89	5	118	44	0	23	31	1.54
42404097--42404123	11	2.5	11	100	0	54	81	0	0	18	0.69
42420592--42420626	15	2.2	16	90	5	54	31	8	0	60	1.27
42426671--42426734	32	2.0	32	100	0	128	37	18	3	40	1.67
42428882--42429014	50	2.7	50	81	0	158	26	20	28	24	1.99
42428937--42429463	265	2.0	267	87	0	752	27	19	25	27	1.99
42429468--42429845	44	8.8	44	71	13	216	29	20	22	27	1.99
42429598--42429885	44	6.6	44	73	14	176	30	21	21	25	1.99
42429598--42429943	128	2.7	128	79	8	328	30	21	21	25	1.98
42429687--42429939	128	2.0	128	84	6	334	30	22	20	26	1.98
42429468--42429882	217	1.9	217	85	2	575	29	21	21	27	1.98
42432285--42432547	120	2.2	119	82	4	316	26	28	20	24	1.99
42432285--42432494	40	5.3	40	92	0	314	26	29	20	23	1.99
42432288--42432547	80	3.3	80	86	3	267	25	28	21	24	1.99
42432479--42432556	40	1.9	41	82	10	97	26	28	21	23	1.99
42440182--42440420	40	6.0	40	87	3	295	27	27	20	25	1.99
42440352--42440429	40	1.9	41	82	10	97	26	28	21	23	1.99
42451711--42451741	15	2.1	15	100	0	62	12	19	19	48	1.81
42455159--42455242	20	4.4	19	73	23	70	33	5	1	59	1.29
42455164--42455213	16	2.8	17	85	11	57	36	8	0	56	1.29
42456947--42456983	18	2.1	18	89	0	56	54	0	24	21	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42459830--42459863	17	2.0	17	94	0	59	38	2	11	47	1.55
42472257--42472298	6	6.8	6	91	5	66	30	14	0	54	1.40
42472244--42472298	19	2.9	19	84	10	69	29	12	1	56	1.47
42472238--42472298	13	4.8	13	88	8	65	27	11	1	59	1.42
42472960--42472997	13	2.8	14	80	19	53	21	7	5	65	1.38
42475039--42475089	20	2.5	20	90	0	75	17	15	15	50	1.78
42476759--42476881	62	2.0	62	93	0	210	22	18	12	46	1.82
42491386--42491435	21	2.4	21	86	0	64	22	14	26	38	1.91
42493596--42493638	21	2.0	21	81	0	50	51	16	0	32	1.45
42500822--42500964	43	3.3	43	83	3	155	25	32	18	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221