genome.fa.s26.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  105  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32321972--32322017	22	2.1	22	84	8	58	65	6	4	23	1.35
32322359--32322398	21	1.9	21	84	0	53	40	5	0	55	1.22
32323402--32323436	17	2.0	18	88	5	54	34	8	0	57	1.29
32329530--32329600	29	2.4	29	88	0	106	30	19	5	43	1.74
32329934--32329991	29	2.0	28	90	3	89	37	18	6	36	1.78
32336014--32336060	24	2.0	23	84	16	60	31	2	2	63	1.18
32337563--32337606	18	2.4	18	88	0	61	20	22	11	45	1.83
32337998--32338118	62	2.0	60	82	6	145	39	3	7	49	1.47
32341220--32341445	114	2.0	115	90	0	355	28	19	16	35	1.94
32341588--32341672	34	2.6	33	86	3	118	41	21	0	37	1.53
32341716--32341749	17	2.1	17	94	5	61	50	38	0	11	1.39
32342933--32342971	18	2.2	18	90	0	60	51	0	2	46	1.14
32343167--32343233	27	2.7	24	78	17	73	49	1	1	47	1.19
32343255--32343319	20	3.2	21	77	12	66	53	0	1	44	1.09
32343978--32344010	13	2.3	15	90	10	52	63	0	33	3	1.10
32344052--32344089	18	2.1	18	90	9	60	60	0	39	0	0.97
32344945--32345021	39	2.1	37	90	7	120	35	2	12	49	1.55
32347926--32347962	19	1.9	19	88	0	56	21	32	37	8	1.83
32352960--32353037	27	2.9	27	75	3	86	25	34	19	20	1.96
32353908--32354091	69	2.7	69	83	2	194	32	20	9	38	1.84
32353934--32354115	69	2.7	66	80	9	197	34	19	9	36	1.84
32355248--32355323	28	2.7	28	89	4	118	44	9	0	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32355396--32355462	27	2.5	27	92	0	107	26	29	28	14	1.96
32355504--32355635	4	31.2	4	75	18	85	67	0	32	0	0.91
32355503--32355635	14	9.7	14	74	18	79	66	0	33	0	0.92
32355508--32355667	18	9.1	18	73	19	108	66	0	33	0	0.92
32355504--32355636	38	3.5	38	79	17	150	66	0	33	0	0.92
32355504--32355663	39	4.2	37	78	14	148	67	0	32	0	0.91
32355497--32355694	42	4.8	40	75	15	149	66	0	33	0	0.92
32361988--32362018	12	2.6	12	94	0	53	61	19	0	19	1.35
32362016--32362073	26	2.4	23	76	17	64	50	10	1	37	1.47
32362024--32362076	26	2.0	26	85	7	72	49	7	1	41	1.42
32362254--32362282	3	9.7	3	100	0	58	68	31	0	0	0.89
32362358--32362396	20	2.0	21	85	10	55	66	10	0	23	1.22
32362637--32362698	27	2.3	27	83	8	83	45	1	11	41	1.50
32365109--32365157	24	2.2	21	82	10	53	16	12	16	55	1.70
32373312--32373377	25	2.7	25	80	15	68	53	0	37	9	1.33
32376374--32376410	16	2.2	17	90	4	58	21	5	5	67	1.31
32383234--32383348	35	3.3	35	67	16	101	24	26	22	26	2.00
32383259--32383383	36	3.5	36	72	10	121	25	22	22	29	1.99
32383199--32383425	71	3.3	70	84	4	275	25	24	22	27	2.00
32388622--32388646	13	1.9	13	100	0	50	72	0	4	24	1.02
32390567--32390640	29	2.6	29	82	2	96	32	8	1	58	1.36
32394920--32394972	22	2.5	21	84	6	72	81	0	15	3	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32394913--32394971	15	3.7	15	79	6	64	81	0	13	5	0.85
32396922--32396956	4	8.8	4	100	0	70	77	0	0	22	0.78
32397224--32397837	264	2.3	264	90	1	937	29	19	22	28	1.98
32397273--32397701	87	4.9	86	71	11	287	30	18	21	28	1.97
32397488--32398153	218	3.1	218	86	1	883	29	19	22	28	1.98
32397269--32397788	87	6.0	84	68	11	224	29	19	21	29	1.97
32398354--32398550	44	4.5	44	72	11	172	30	22	23	22	1.99
32398351--32398583	44	5.4	43	69	13	131	30	22	21	24	1.99
32398264--32398639	129	2.9	129	91	1	576	30	22	21	25	1.99
32400157--32400209	21	2.5	21	74	17	56	33	3	1	60	1.26
32400578--32400672	29	3.2	28	77	8	91	32	7	2	57	1.38
32411677--32411717	16	2.5	17	80	15	50	39	2	7	51	1.43
32412676--32412718	17	2.4	18	88	7	61	69	4	2	23	1.18
32413012--32413064	19	2.8	19	78	16	56	39	16	1	41	1.60
32413922--32413982	23	2.5	26	82	15	76	32	21	21	24	1.98
32422495--32422555	26	2.5	26	82	15	76	32	19	21	26	1.97
32435691--32435758	21	3.3	20	70	25	61	36	41	2	19	1.66
32435706--32435771	18	3.4	18	73	18	69	39	43	1	15	1.55
32435690--32435771	41	2.0	41	97	0	155	37	41	3	17	1.67
32436594--32436666	12	6.5	12	73	19	52	68	2	19	9	1.30
32436595--32436662	21	3.1	21	74	18	59	67	2	19	10	1.33
32443816--32444437	49	12.9	49	94	3	1070	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32443816--32444437	96	6.5	97	95	2	1048	32	8	29	29	1.86
32443816--32444437	145	4.3	143	95	2	1059	32	8	29	29	1.86
32448040--32448082	21	2.0	21	90	0	68	13	23	18	44	1.86
32450141--32450258	29	4.1	29	79	12	104	40	1	1	55	1.20
32450218--32450250	17	1.9	17	93	0	57	39	0	3	57	1.14
32451019--32451061	20	2.1	21	86	4	61	37	2	0	60	1.10
32462936--32462969	17	1.9	17	88	5	50	58	5	0	35	1.22
32463042--32463092	25	2.1	24	81	3	57	50	1	1	45	1.24
32471418--32471466	3	16.7	3	95	4	91	65	0	0	34	0.93
32472362--32472417	27	2.0	28	83	10	71	58	1	0	39	1.08
32473750--32473784	7	5.1	7	86	6	54	71	0	0	28	0.86
32473750--32473784	13	2.6	14	86	9	54	71	0	0	28	0.86
32474902--32474968	17	3.6	19	74	20	61	59	0	1	38	1.06
32474900--32474941	20	2.0	20	86	9	57	59	0	0	40	0.97
32477741--32477801	19	3.3	19	76	10	56	27	1	3	67	1.16
32477736--32477791	28	2.0	28	82	6	69	33	1	1	62	1.16
32482992--32483041	11	4.5	11	77	5	55	4	4	30	62	1.32
32483001--32483052	23	2.3	22	87	6	77	5	7	25	61	1.45
32485404--32485483	27	3.0	27	88	0	124	37	11	25	26	1.89
32489075--32489125	25	2.0	26	81	11	61	49	0	3	47	1.20
32506705--32506816	44	2.6	43	82	1	134	28	23	20	27	1.99
32517475--32517587	55	2.1	55	100	0	226	19	26	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32524538--32524582	17	2.7	17	82	3	56	42	15	13	28	1.85
32525120--32525170	19	2.7	19	77	16	61	45	3	11	39	1.59
32531837--32531890	27	2.0	28	85	3	74	16	3	35	44	1.66
32538321--32538372	24	2.2	24	89	0	77	59	13	13	13	1.61
32538845--32538874	13	2.3	13	94	0	51	16	0	0	83	0.65
32539543--32539567	7	3.6	7	100	0	50	84	0	0	16	0.63
32544443--32544521	24	3.3	25	73	16	69	17	30	16	35	1.92
32544582--32544652	25	2.8	26	82	6	92	18	23	22	35	1.96
32548673--32548738	23	2.9	23	72	4	62	43	16	7	31	1.76
32548673--32548761	47	1.9	46	84	6	117	44	17	7	29	1.77
32556220--32556294	3	24.7	3	78	8	80	61	2	4	32	1.28
32557713--32557892	98	1.8	98	86	2	263	28	21	17	32	1.96
32562206--32562248	20	2.1	20	82	4	50	16	30	4	48	1.66
32564645--32564758	3	37.7	3	84	5	149	62	1	4	31	1.25
32566689--32566751	27	2.3	28	76	13	69	46	0	6	47	1.28
32566735--32566775	23	1.9	20	85	14	55	73	0	4	21	1.02
32566783--32566830	14	3.3	14	78	16	53	50	10	6	33	1.62
32566842--32566891	24	2.1	24	82	10	59	70	10	2	18	1.25
32572410--32572449	17	2.3	18	86	4	55	45	0	5	50	1.23
32577270--32577308	20	2.0	20	90	10	62	33	0	20	46	1.51
32585215--32585461	63	3.9	63	80	4	275	27	5	31	35	1.80
32590203--32590297	6	15.8	6	100	0	190	67	15	0	16	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32591824--32591852	14	2.1	14	93	6	51	75	0	0	24	0.80
32592104--32592381	141	2.0	141	94	0	493	22	19	27	30	1.98
32596260--32596374	50	2.2	52	84	6	155	38	12	14	34	1.84
32597096--32597136	21	1.9	22	85	5	57	9	12	4	73	1.24
32599442--32599479	7	5.6	7	84	6	51	81	2	0	15	0.80
32599446--32599477	13	2.5	13	94	0	55	84	3	0	12	0.74
32604900--32605096	65	3.2	63	67	22	166	41	3	5	49	1.41
32604981--32605036	15	3.5	18	75	24	63	42	0	0	57	0.99
32604862--32605157	119	2.5	119	92	2	479	42	2	4	50	1.36
32604935--32605117	56	3.1	57	67	27	137	41	2	6	49	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221