genome.fa.s26.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  200  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58558666--58558717	23	2.3	23	93	0	86	50	9	1	38	1.46
58558666--58558730	23	2.8	23	83	4	69	52	9	1	36	1.43
58559679--58559706	4	7.0	4	100	0	56	25	0	0	75	0.81
58560227--58560260	15	2.4	14	90	5	50	70	0	5	23	1.09
58563109--58563144	19	1.9	18	88	5	54	63	2	19	13	1.41
58563267--58563291	13	1.9	13	100	0	50	36	0	0	64	0.94
58570758--58570796	20	2.0	20	84	0	51	28	12	7	51	1.67
58599322--58599391	31	2.3	31	82	4	90	40	21	8	30	1.83
58599590--58599616	14	1.9	14	100	0	54	29	14	18	37	1.91
58601202--58601252	22	2.3	23	77	16	61	31	1	7	58	1.37
58601916--58601962	24	2.0	24	91	0	76	27	19	12	40	1.88
58606875--58606922	18	2.7	18	80	3	62	33	2	4	60	1.27
58607934--58607963	14	2.1	14	100	0	60	33	6	0	60	1.23
58609508--58609553	21	2.2	21	77	11	51	50	10	0	39	1.38
58609490--58609608	63	1.9	62	91	1	193	52	10	4	32	1.56
58612376--58612413	20	1.9	20	94	0	67	39	7	34	18	1.80
58613672--58613730	29	2.0	30	90	3	93	32	0	11	55	1.36
58615776--58615800	3	8.3	3	100	0	50	32	32	36	0	1.58
58622766--58622807	21	2.0	22	85	4	59	47	7	0	45	1.30
58624921--58624969	17	2.9	17	82	8	55	26	6	0	67	1.14
58630680--58630866	51	3.7	50	80	4	232	31	28	16	23	1.96
58630681--58630864	101	1.8	101	91	3	307	31	28	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58631395--58631423	8	3.6	8	100	0	58	24	0	0	75	0.80
58633312--58633423	57	2.0	56	89	1	170	28	20	26	24	1.99
58638365--58638423	29	2.0	31	86	6	86	35	18	20	25	1.95
58640762--58640792	11	2.8	11	90	0	53	32	0	0	67	0.91
58640762--58640807	22	2.1	22	84	8	58	36	0	2	60	1.09
58644905--58644945	21	2.0	21	85	0	55	29	21	31	17	1.96
58649168--58649204	18	2.1	18	89	0	56	59	8	0	32	1.27
58650154--58650211	9	6.4	9	91	0	98	41	22	12	24	1.87
58650314--58650357	18	2.4	18	88	0	61	13	2	43	40	1.57
58657065--58657122	27	2.2	26	90	6	91	27	13	15	43	1.85
58659325--58659388	4	15.2	4	73	20	51	3	18	6	71	1.20
58667753--58667815	30	2.1	31	93	3	110	36	9	17	36	1.82
58672473--58672535	30	2.1	31	93	3	110	36	9	17	36	1.82
58675030--58675235	112	1.8	112	98	0	403	16	13	18	51	1.76
58678854--58678895	15	2.7	16	82	14	52	52	2	0	45	1.13
58678863--58678904	15	2.9	15	82	10	52	52	0	0	47	1.00
58678889--58679076	61	3.1	61	70	15	192	49	6	1	42	1.38
58678973--58679015	15	2.8	15	82	10	52	51	2	2	44	1.27
58678857--58679114	120	2.1	121	92	2	432	50	5	2	41	1.38
58699404--58699446	22	2.0	22	85	0	59	48	2	0	48	1.14
58699980--58700017	14	2.6	14	80	19	51	57	7	0	34	1.28
58712978--58713216	50	4.7	49	80	6	212	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58714295--58714425	19	6.4	19	80	14	136	36	6	14	41	1.73
58714299--58714425	42	3.0	41	77	15	134	37	6	14	40	1.72
58714295--58714425	61	2.1	62	94	2	228	36	6	14	41	1.73
58714856--58714892	19	1.9	20	88	5	58	32	0	2	64	1.07
58718430--58718538	54	2.0	54	96	0	200	19	14	11	55	1.69
58718705--58718758	26	2.0	26	82	10	63	61	7	0	31	1.24
58723295--58723324	9	3.2	9	90	9	51	40	0	0	60	0.97
58723295--58723324	10	3.1	10	95	4	53	40	0	0	60	0.97
58724238--58724281	21	2.1	21	83	4	54	40	2	2	54	1.25
58724830--58724875	22	2.1	22	84	8	58	52	2	36	8	1.45
58726544--58726735	100	1.9	100	86	0	276	32	17	13	36	1.88
58733632--58733665	17	2.0	17	94	0	59	38	0	0	61	0.96
58733649--58733716	11	6.4	11	74	17	54	35	2	0	61	1.11
58733630--58733717	41	2.1	41	91	4	142	34	2	0	63	1.07
58733660--58733730	31	2.3	30	85	7	90	36	2	0	60	1.11
58733641--58733719	41	1.9	41	100	0	158	34	2	0	63	1.08
58733701--58733738	20	1.9	20	88	0	58	36	2	0	60	1.11
58734740--58734787	22	2.1	24	88	7	73	68	4	0	27	1.07
58738857--58738889	17	1.9	17	100	0	66	36	0	0	63	0.95
58741838--58741932	44	2.1	44	80	7	111	33	5	24	36	1.78
58742311--58742366	23	2.5	22	81	16	62	46	0	7	46	1.30
58744249--58744739	46	11.6	46	78	16	580	28	21	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58744386--58744699	36	7.9	36	74	20	270	27	19	15	37	1.92
58744340--58744739	82	4.9	82	96	0	737	28	20	14	36	1.92
58747519--58747649	67	2.0	66	93	1	226	26	32	19	21	1.97
58753207--58753283	40	1.9	41	86	2	111	49	1	7	41	1.40
58757206--58757287	32	2.6	32	96	0	146	41	13	6	39	1.69
58757417--58757518	32	3.2	32	62	20	77	52	8	7	30	1.61
58757403--58757680	64	4.4	64	96	0	483	50	7	10	32	1.65
58760992--58761223	117	2.0	112	84	11	294	44	1	3	50	1.29
58760992--58761122	44	3.0	44	71	15	114	45	0	3	49	1.25
58761170--58761203	17	2.0	17	100	0	68	41	0	0	58	0.98
58761170--58761220	16	3.2	15	83	8	57	41	1	0	56	1.10
58762634--58762681	19	2.6	18	81	12	53	35	2	6	56	1.36
58770128--58770165	20	1.9	19	89	5	58	42	0	0	57	0.98
58771671--58771695	13	1.9	13	100	0	50	64	16	4	16	1.44
58773660--58773737	9	9.2	9	68	13	58	32	1	2	64	1.15
58785104--58785150	21	2.2	21	84	0	67	72	14	6	6	1.25
58786111--58786151	21	1.9	22	95	5	75	60	0	0	39	0.96
58787296--58787341	17	2.7	17	82	0	56	39	0	0	60	0.97
58787325--58787372	11	4.4	11	74	10	53	35	2	0	62	1.07
58787333--58787387	22	2.5	21	83	13	67	34	1	3	60	1.25
58798047--58798081	15	2.4	15	90	4	54	48	0	8	42	1.33
58817749--58817794	22	2.1	22	83	0	56	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58822623--58822664	18	2.4	18	84	4	59	38	9	0	52	1.34
58826164--58826742	310	1.9	312	84	3	781	46	10	9	33	1.71
58828632--58828667	14	2.6	14	86	0	54	27	0	11	61	1.30
58828602--58828649	25	2.0	25	91	4	80	35	0	12	52	1.40
58829502--58829536	15	2.3	16	90	9	56	85	0	14	0	0.59
58829504--58829539	18	2.0	18	89	10	56	83	0	16	0	0.65
58829501--58829539	15	2.7	14	80	7	51	82	0	17	0	0.68
58839476--58839553	29	2.7	28	76	21	72	41	0	7	51	1.31
58844557--58844587	16	1.9	16	93	0	53	25	25	0	48	1.52
58854149--58854214	31	2.1	32	85	2	89	28	13	10	46	1.76
58857557--58857581	12	2.1	12	100	0	50	32	16	28	24	1.96
58864481--58864511	9	3.3	9	95	4	53	12	0	0	87	0.55
58873126--58873172	20	2.3	20	88	0	67	59	0	0	40	0.97
58873127--58873211	30	2.8	29	81	13	84	61	0	1	37	1.04
58873119--58873181	11	5.8	11	70	22	53	57	0	0	42	0.99
58873147--58873238	39	2.3	40	92	7	154	66	0	1	32	0.99
58873812--58873845	11	3.1	11	82	0	50	67	5	0	26	1.13
58874638--58874671	16	2.1	16	88	0	50	41	8	0	50	1.34
58876046--58876585	276	2.0	264	90	4	855	42	13	12	31	1.82
58878504--58878651	60	2.5	58	78	4	172	27	14	18	39	1.90
58879327--58879354	6	4.7	6	100	0	56	17	32	17	32	1.94
58904501--58904562	31	2.1	29	87	6	88	37	6	9	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58904522--58904627	31	3.5	29	73	10	79	36	10	8	44	1.69
58904638--58904698	25	2.5	24	80	12	72	44	1	4	49	1.33
58926466--58926540	37	2.0	37	94	0	132	49	4	10	36	1.56
58928487--58928527	14	2.9	14	85	3	55	14	2	7	75	1.12
58928624--58928665	20	2.1	20	90	0	66	47	9	19	23	1.78
58932218--58932256	20	2.0	20	84	0	51	38	12	2	46	1.56
58937311--58937349	20	2.0	20	89	0	60	41	10	2	46	1.51
58941442--58941507	33	2.0	33	81	0	78	45	4	0	50	1.22
58968415--58968490	31	2.5	31	84	0	98	42	10	28	18	1.83
58974199--58974231	17	2.0	17	88	5	50	69	6	3	21	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221