genome.fa.s26.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  151  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45804600--45804639	18	2.2	18	95	0	71	67	12	0	20	1.22
45805325--45805782	157	3.0	152	84	8	585	39	10	4	44	1.60
45806861--45806898	13	2.8	13	81	18	51	52	15	15	15	1.75
45820916--45821068	45	3.4	44	81	3	173	33	18	15	32	1.92
45820880--45821079	90	2.3	90	84	4	255	33	17	15	33	1.91
45822716--45822916	41	4.9	41	91	2	314	16	17	27	38	1.91
45822721--45822981	123	2.1	123	81	6	298	17	18	25	38	1.93
45823329--45823398	16	4.4	16	67	16	56	27	1	21	50	1.57
45823331--45823411	23	3.5	23	72	22	80	23	1	24	50	1.56
45823422--45823462	22	1.9	21	85	14	57	19	0	24	56	1.42
45827576--45827633	29	2.0	29	100	0	116	31	24	3	41	1.71
45827760--45827816	9	6.7	9	76	9	57	42	12	1	43	1.52
45827783--45827814	16	2.0	16	93	0	55	46	12	0	40	1.42
45827909--45827978	12	6.0	12	76	6	72	47	17	4	31	1.67
45827926--45827978	22	2.3	24	80	6	65	50	16	1	30	1.56
45827926--45827997	34	2.2	30	81	16	74	51	19	1	27	1.55
45828032--45828379	9	38.2	9	76	6	326	45	18	4	31	1.68
45828032--45828379	55	6.4	54	83	3	304	45	18	4	31	1.68
45828032--45828372	146	2.3	146	91	1	531	46	17	4	31	1.68
45828590--45828703	11	11.2	10	76	16	58	31	1	0	66	1.02
45828590--45828663	10	7.1	11	79	15	61	29	1	0	68	0.97
45828559--45828751	40	4.5	41	80	14	201	36	3	0	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45828568--45828703	51	2.7	51	89	4	195	32	2	0	64	1.08
45828660--45828751	11	8.9	11	75	17	74	41	3	0	55	1.16
45828700--45828751	10	4.9	11	84	13	65	46	3	0	50	1.20
45828607--45828731	51	2.4	51	89	4	180	36	3	0	60	1.13
45828907--45829216	9	34.0	9	78	4	318	47	17	3	32	1.64
45828907--45829203	37	8.4	37	82	9	343	47	17	3	31	1.63
45828892--45829216	137	2.4	137	90	2	510	47	17	3	31	1.63
45834580--45834715	66	2.1	66	91	0	218	41	18	27	13	1.87
45835065--45835220	43	3.7	43	86	4	210	28	17	26	27	1.98
45835500--45835567	28	2.4	28	77	0	73	22	20	32	25	1.98
45837335--45837375	19	2.1	20	90	4	66	58	7	2	31	1.38
45840371--45840399	9	3.2	9	100	0	58	44	0	10	44	1.38
45847087--45847143	28	2.0	28	100	0	114	35	10	3	50	1.54
45847323--45847413	39	2.4	39	76	7	96	40	12	13	34	1.81
45865022--45865064	17	2.5	17	84	3	59	76	2	4	16	1.05
45871679--45871770	45	2.0	46	95	4	168	58	13	15	13	1.63
45874177--45874242	29	2.3	29	89	0	105	19	19	31	28	1.97
45874189--45874250	29	2.1	29	90	0	97	22	24	25	27	2.00
45879251--45879278	5	5.6	5	100	0	56	42	35	0	21	1.53
45879741--45879789	25	1.9	26	83	4	64	38	18	10	32	1.84
45887657--45887694	19	2.0	19	85	10	51	60	2	7	28	1.38
45887727--45887751	12	2.1	12	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45887773--45887827	20	2.8	20	80	0	65	52	1	7	38	1.40
45888458--45888486	14	2.0	15	93	6	51	55	31	0	13	1.39
45890532--45890589	30	1.9	30	85	0	80	39	24	17	18	1.92
45894704--45894851	73	2.0	73	100	0	296	44	10	5	39	1.62
45896068--45896139	27	2.7	27	80	0	90	23	31	33	11	1.90
45896226--45896259	18	1.9	17	88	5	50	76	5	8	8	1.15
45896192--45896299	52	2.1	49	81	5	126	63	5	9	21	1.44
45896243--45896575	153	2.2	152	85	9	464	56	8	7	27	1.56
45896629--45896656	10	2.8	10	100	0	56	28	0	0	71	0.86
45896670--45897218	161	3.4	159	89	4	820	26	8	9	55	1.60
45901296--45901350	29	1.9	28	85	3	74	12	14	1	70	1.24
45934303--45934334	13	2.5	13	94	0	55	34	6	3	56	1.40
45938141--45938674	208	2.6	208	82	1	642	35	14	19	30	1.92
45938141--45938678	104	5.2	104	82	5	579	34	15	19	30	1.93
45957273--45957467	54	3.6	54	88	6	295	34	23	15	26	1.94
45957430--45957616	52	3.6	52	80	5	175	32	19	20	27	1.97
45957436--45957584	52	2.8	53	80	5	178	36	19	20	24	1.95
45958511--45958590	31	2.5	31	80	6	81	61	5	6	27	1.41
45962408--45962485	23	3.5	22	83	14	90	60	1	2	35	1.19
45962501--45962549	25	2.0	24	92	4	80	57	0	2	40	1.10
45963255--45963514	86	3.0	87	87	1	387	45	6	10	37	1.65
45968097--45968145	25	2.0	25	95	0	89	16	14	20	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45971060--45971122	26	2.4	26	89	5	92	71	0	3	25	1.01
45971068--45971125	13	4.7	12	76	14	55	70	0	3	25	1.03
45972697--45972766	22	3.3	21	86	7	97	12	32	28	25	1.93
45977145--45977201	24	2.4	24	84	0	69	21	21	22	35	1.96
45982846--45983003	42	3.7	43	77	5	140	29	25	18	26	1.98
45982898--45983003	44	2.5	42	80	6	106	32	25	16	25	1.97
46001688--46001799	44	2.5	44	81	5	120	28	19	19	32	1.97
46001820--46001935	45	2.6	45	81	14	150	27	18	25	28	1.98
46001963--46002123	44	3.6	44	78	12	145	29	20	22	27	1.98
46001811--46002089	147	1.9	147	93	0	477	30	19	22	27	1.98
46001965--46002084	45	2.7	43	76	15	129	28	20	23	27	1.99
46002839--46002884	23	2.1	22	84	8	58	32	8	2	56	1.42
46004245--46004301	12	4.7	12	72	12	53	63	19	5	12	1.47
46004242--46004301	25	2.5	23	81	10	75	61	18	6	13	1.53
46007288--46007373	27	3.2	27	75	9	70	37	16	20	25	1.93
46007308--46007379	27	2.7	27	84	0	81	37	16	18	27	1.92
46012187--46012278	43	2.2	42	82	9	107	28	17	2	52	1.56
46014448--46014484	9	4.1	9	92	0	65	45	13	10	29	1.77
46014689--46014732	23	1.9	23	95	0	79	27	27	0	45	1.54
46015034--46015062	9	3.2	9	100	0	58	31	0	0	68	0.89
46017293--46017330	19	2.0	19	100	0	76	31	21	10	36	1.87
46019359--46019401	23	1.9	23	90	4	70	37	4	18	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46025356--46025562	49	4.2	49	88	4	251	30	15	19	33	1.94
46027535--46027577	23	1.9	23	90	4	70	37	4	18	39	1.72
46038670--46038720	23	2.2	23	89	0	75	27	7	21	43	1.80
46042910--46042951	11	3.7	11	83	3	57	30	2	2	64	1.19
46044505--46044588	22	3.8	22	80	4	80	34	17	29	17	1.94
46044505--46044602	22	4.4	22	78	6	74	34	18	30	16	1.93
46044552--46044613	22	2.8	22	85	0	79	35	19	30	14	1.92
46044993--46045043	28	1.9	25	84	11	66	33	13	1	50	1.53
46047671--46047729	21	2.6	23	73	15	59	35	1	1	61	1.16
46047675--46047724	21	2.3	22	86	3	66	36	2	2	60	1.20
46063372--46063420	24	2.0	24	100	0	98	24	24	16	34	1.95
46073736--46073791	2	28.0	2	100	0	112	50	0	50	0	1.00
46079046--46079142	30	3.2	30	75	2	106	28	15	26	28	1.96
46081253--46081316	30	2.1	30	86	11	87	14	21	0	64	1.29
46081324--46081354	12	2.6	12	100	0	62	25	16	12	45	1.83
46081415--46081464	6	8.2	6	81	16	50	2	20	2	76	0.99
46081404--46081474	37	1.9	37	86	11	101	2	18	2	76	1.04
46081400--46081460	16	3.8	16	77	14	63	3	19	1	75	1.03
46081799--46081835	18	2.1	18	100	0	74	21	5	43	29	1.75
46082434--46082473	13	3.1	14	86	13	59	12	5	7	75	1.18
46082554--46082594	17	2.5	17	80	4	57	4	7	4	82	0.93
46084195--46084291	30	3.2	30	75	2	106	28	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46087078--46087195	43	2.8	43	83	3	150	25	17	25	31	1.97
46087039--46087195	43	3.7	43	76	12	146	25	17	26	30	1.97
46089748--46089888	30	4.7	30	83	1	167	37	14	14	34	1.86
46097587--46097649	25	2.5	25	87	7	83	20	6	1	71	1.16
46097580--46097632	4	12.8	4	80	7	61	24	3	0	71	1.02
46097982--46098024	6	6.8	6	81	7	50	18	2	2	76	1.00
46105138--46105258	23	5.3	23	82	9	158	23	20	25	30	1.98
46105137--46105258	46	2.7	46	92	2	210	23	20	25	30	1.99
46107210--46107251	21	2.0	21	86	9	59	16	4	4	73	1.17
46107225--46107257	17	1.9	17	93	0	57	15	3	3	78	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221