genome.fa.s26.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  164  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49244817--49244860	13	3.4	13	87	6	54	52	31	0	15	1.44
49244817--49244878	20	3.1	21	75	11	58	50	33	0	16	1.45
49244783--49244875	7	13.7	7	70	10	59	46	31	0	22	1.52
49261443--49261516	35	2.1	35	87	0	103	24	6	20	48	1.73
49265225--49265282	30	1.9	30	85	3	80	25	6	17	50	1.71
49266481--49266519	21	2.0	18	85	14	51	51	2	10	35	1.50
49266642--49266706	25	2.5	26	76	19	64	50	3	1	44	1.26
49266696--49266769	35	2.2	34	79	16	82	51	5	1	41	1.33
49270313--49270384	21	3.5	21	75	9	85	51	1	1	45	1.18
49270486--49270546	32	1.9	32	89	0	95	50	1	8	39	1.42
49279256--49279296	21	2.0	21	85	4	57	31	9	17	41	1.82
49281433--49281497	3	21.0	3	72	12	51	60	1	9	29	1.37
49281579--49281725	79	1.9	78	81	7	181	59	3	7	29	1.41
49283000--49283143	44	3.3	44	79	3	148	27	21	22	29	1.99
49283038--49283211	88	2.0	88	79	6	192	27	21	21	29	1.99
49283297--49283427	46	2.8	47	75	4	131	31	22	13	32	1.93
49283346--49283915	44	12.8	43	72	8	313	30	23	16	30	1.96
49283346--49283917	89	6.4	89	72	8	355	29	23	16	30	1.96
49283346--49283920	133	4.3	131	74	7	410	29	23	16	30	1.96
49295865--49296020	50	3.1	50	85	0	204	21	30	21	25	1.98
49295981--49296057	37	2.1	37	95	0	136	20	31	20	27	1.98
49298547--49298611	3	21.0	3	72	12	51	61	1	7	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49298693--49298839	79	1.9	78	81	7	181	59	3	7	29	1.41
49307044--49307110	33	2.0	33	94	0	116	47	2	26	22	1.65
49311554--49311752	103	1.9	103	91	0	326	31	9	12	46	1.74
49323462--49323514	25	2.1	27	89	10	85	56	24	0	18	1.42
49338809--49338892	43	1.9	45	83	9	111	45	1	2	51	1.22
49339048--49339101	16	3.4	16	82	10	65	27	22	3	46	1.69
49339056--49339109	16	3.4	16	85	10	74	25	24	1	48	1.61
49339407--49339476	34	2.1	34	100	0	140	48	11	5	34	1.63
49358777--49358840	21	3.0	22	73	17	71	37	25	17	20	1.93
49359694--49359718	6	4.2	6	100	0	50	0	16	0	84	0.63
49359948--49359985	14	2.4	17	87	12	55	52	0	0	47	1.00
49359965--49360003	12	3.4	11	80	13	51	46	2	0	51	1.14
49362654--49362844	51	3.8	51	79	8	228	32	26	16	24	1.96
49362652--49362836	101	1.8	102	90	3	302	32	25	17	23	1.96
49366464--49366784	25	12.8	25	71	3	189	35	16	27	21	1.94
49366468--49366728	50	5.2	50	87	0	362	36	15	27	20	1.93
49368321--49368378	3	19.0	3	78	3	62	29	5	3	62	1.33
49368445--49368474	14	2.1	14	93	0	51	46	13	0	40	1.43
49369147--49369290	74	1.9	75	85	2	202	25	18	16	39	1.91
49371794--49371843	22	2.3	22	89	0	73	38	16	26	20	1.92
49375096--49375135	19	2.1	19	86	9	55	52	0	15	32	1.43
49375548--49375660	37	2.9	39	80	11	142	24	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49376411--49376630	110	2.0	110	87	3	318	25	20	32	20	1.97
49381149--49381187	17	2.4	17	91	4	62	51	0	0	48	1.00
49386204--49386427	44	5.1	44	71	13	149	26	24	20	28	1.99
49386156--49386543	131	2.9	130	88	3	571	26	24	20	29	1.99
49386537--49386810	89	3.1	89	86	1	370	24	23	23	28	2.00
49386622--49386760	44	3.1	44	69	10	120	22	23	25	28	1.99
49386577--49386716	45	3.1	45	70	10	115	24	22	22	30	1.99
49386884--49387002	44	2.7	44	85	1	150	29	23	20	26	1.99
49387335--49387603	44	6.1	45	72	11	155	28	22	17	31	1.97
49387448--49387566	45	2.6	45	80	10	127	26	25	18	29	1.98
49395991--49396029	14	2.8	14	84	0	51	30	20	10	38	1.86
49399588--49399983	73	5.4	73	85	0	522	29	18	25	26	1.98
49399588--49399983	219	1.8	219	89	0	621	29	18	25	26	1.98
49399880--49400093	114	1.9	114	87	0	311	26	18	27	27	1.98
49399994--49400165	73	2.4	73	86	0	254	26	18	27	27	1.98
49399807--49400206	187	2.1	187	90	0	620	26	18	27	27	1.98
49400140--49400247	41	2.6	41	95	2	191	20	19	30	29	1.97
49400067--49400360	154	1.9	155	87	2	439	25	19	27	27	1.99
49400181--49400413	113	2.1	114	86	4	319	25	19	27	27	1.99
49399880--49400525	341	1.9	342	91	0	1051	26	18	27	27	1.98
49400335--49400506	73	2.4	73	78	3	202	26	18	28	26	1.98
49400692--49400796	14	7.4	14	69	12	61	20	1	30	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49400750--49400797	22	2.2	21	81	3	60	20	0	31	47	1.50
49400837--49400880	13	3.1	14	80	9	54	22	0	29	47	1.51
49405908--49405933	5	5.2	5	100	0	52	80	0	0	19	0.71
49406008--49406213	85	2.4	85	86	6	283	22	17	27	31	1.97
49406008--49406213	43	4.8	43	86	5	276	22	17	27	31	1.97
49406913--49407032	61	2.0	60	86	1	168	26	24	16	32	1.96
49410860--49410921	28	2.2	27	78	16	63	40	1	4	53	1.32
49412979--49413040	24	2.5	24	89	7	90	48	17	12	20	1.80
49421141--49421249	25	4.4	25	76	10	107	30	22	25	21	1.99
49421133--49421249	50	2.3	50	81	5	130	30	22	24	22	1.99
49422265--49422303	19	1.9	19	90	10	60	69	17	0	12	1.19
49423508--49423774	26	10.2	26	71	13	174	31	6	3	58	1.39
49423626--49423750	55	2.3	53	80	10	128	28	5	4	60	1.40
49423769--49423873	26	4.1	26	78	11	92	22	4	9	62	1.44
49423769--49423873	52	2.1	50	80	10	115	22	4	9	62	1.44
49426451--49426487	17	2.1	18	85	14	51	32	0	13	54	1.40
49427221--49427280	30	2.0	31	86	3	86	20	36	0	43	1.52
49443202--49443241	21	2.0	21	90	5	64	22	2	40	35	1.68
49443227--49443287	22	2.9	22	78	9	65	27	1	37	32	1.67
49443234--49443302	36	1.9	36	93	0	120	26	1	39	33	1.65
49443284--49443312	15	1.9	15	100	0	58	20	0	41	37	1.53
49443284--49443312	8	3.8	8	90	9	51	20	0	41	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49443497--49443533	7	5.3	7	86	0	56	29	0	35	35	1.58
49443493--49443533	14	2.9	14	96	0	73	29	0	34	36	1.58
49443476--49443540	14	4.6	14	84	1	67	30	0	32	36	1.58
49462653--49462698	22	2.1	22	83	0	56	17	8	10	63	1.51
49465920--49465982	3	22.0	3	75	15	62	66	0	28	4	1.12
49465920--49465988	17	4.1	17	79	7	86	68	0	27	4	1.09
49465920--49465974	20	2.8	20	81	10	60	67	0	29	3	1.08
49465923--49465994	34	2.2	33	92	2	117	65	0	29	5	1.15
49466883--49466921	20	1.9	21	89	5	62	66	0	28	5	1.12
49483127--49483168	16	2.7	16	88	3	59	40	2	23	33	1.68
49486361--49486529	84	2.0	84	95	0	302	31	28	15	24	1.95
49488467--49488522	27	2.1	27	96	0	103	39	23	7	30	1.81
49489469--49489510	10	4.2	10	81	9	50	40	0	2	57	1.12
49489469--49489510	20	2.1	20	86	8	59	40	0	2	57	1.12
49489464--49489515	14	3.4	14	72	23	50	40	0	1	57	1.10
49490115--49490482	184	2.0	184	97	0	700	36	13	16	34	1.87
49492832--49493260	28	15.1	28	77	5	315	30	20	20	29	1.97
49492926--49493263	118	2.9	118	79	6	327	30	20	20	28	1.98
49493276--49493318	20	2.2	20	95	0	77	30	11	20	37	1.89
49493296--49493472	29	6.1	29	87	0	264	32	22	16	27	1.96
49498630--49498817	68	2.8	69	89	1	272	27	23	14	34	1.94
49501758--49501814	21	2.7	21	80	0	69	36	22	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49505006--49505052	23	1.9	24	87	12	69	31	0	8	59	1.27
49506676--49506715	19	2.1	19	86	9	55	60	32	0	7	1.25
49507075--49507104	12	2.5	12	94	0	51	10	6	6	76	1.15
49508134--49508158	4	6.2	4	100	0	50	28	0	0	72	0.86
49509729--49509780	23	2.2	24	82	3	61	71	3	1	23	1.13
49510717--49510762	20	2.3	20	84	0	56	45	4	13	36	1.63
49512278--49512303	13	2.0	13	100	0	52	61	30	0	7	1.24
49520586--49520639	26	2.2	23	87	9	72	68	0	1	29	1.00
49520866--49520891	2	13.0	2	100	0	52	50	50	0	0	1.00
49523706--49523730	2	12.5	2	100	0	50	0	0	48	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221