genome.fa.s26.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  128  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39445191--39445217	12	2.2	12	100	0	54	51	0	0	48	1.00
39450452--39450498	21	2.2	22	85	11	62	38	6	0	55	1.26
39452202--39452306	52	2.0	52	81	0	120	46	6	11	35	1.66
39452746--39452801	15	3.5	15	72	13	58	46	1	0	51	1.11
39452727--39452806	33	2.5	33	93	2	135	51	2	0	46	1.14
39452899--39452929	15	2.0	16	93	6	55	61	0	0	38	0.96
39452966--39452998	15	2.2	15	94	0	57	57	0	0	42	0.98
39476410--39476566	42	3.8	42	82	3	113	44	19	21	14	1.86
39476416--39476484	21	3.3	21	75	0	66	40	20	24	14	1.90
39476469--39476533	20	3.2	20	68	4	58	46	18	20	15	1.84
39476423--39476579	83	1.9	83	85	2	217	44	18	21	15	1.86
39476452--39476584	42	3.2	42	82	6	171	45	18	20	15	1.86
39476473--39476586	21	5.5	21	65	10	72	47	18	17	16	1.83
39476671--39476718	24	2.0	24	95	0	87	16	29	10	43	1.81
39476777--39476863	45	1.9	45	85	0	120	45	12	1	40	1.50
39478950--39478988	17	2.2	18	86	4	53	48	12	2	35	1.55
39495996--39496188	50	3.8	50	87	2	271	21	30	22	25	1.98
39495996--39496188	100	1.9	101	91	3	318	21	30	22	25	1.98
39505317--39505377	30	2.0	30	96	0	113	19	27	32	19	1.96
39523577--39523753	39	4.5	39	88	0	246	42	20	6	29	1.77
39545898--39545945	10	4.8	10	78	0	60	66	2	4	27	1.21
39545898--39545952	20	2.7	19	78	10	56	67	1	5	25	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39553077--39553131	20	2.7	19	83	10	74	10	32	12	43	1.78
39553070--39553221	40	3.8	40	75	9	114	14	23	14	47	1.81
39553094--39553274	60	3.0	60	84	1	229	14	24	16	44	1.85
39553094--39553290	20	9.9	20	71	7	105	15	24	17	42	1.87
39553171--39553287	60	2.0	60	87	3	173	14	23	19	42	1.88
39556422--39556463	11	3.6	11	81	12	57	35	0	4	59	1.19
39556488--39556517	15	2.0	15	93	0	51	70	0	26	3	1.03
39559968--39560009	22	1.9	22	85	0	57	14	21	23	40	1.90
39560169--39560266	43	2.3	42	83	1	124	19	20	32	27	1.97
39560253--39560546	43	6.8	43	75	8	206	29	27	18	24	1.98
39560232--39560539	86	3.6	85	76	5	260	28	27	19	24	1.98
39560897--39560977	21	3.9	21	83	0	90	9	43	16	30	1.80
39560898--39560989	42	2.2	42	84	3	114	9	42	16	31	1.80
39560965--39561008	21	2.1	21	95	0	79	9	40	13	36	1.76
39561000--39561126	66	1.9	66	93	3	220	14	27	18	39	1.90
39566578--39566613	18	2.0	18	94	0	63	33	0	13	52	1.41
39566651--39566892	9	27.7	9	68	16	91	38	2	16	41	1.64
39566758--39566887	16	8.1	16	73	21	87	36	1	17	44	1.58
39566757--39566811	25	2.2	25	84	12	69	32	0	23	43	1.54
39566774--39566949	81	2.2	81	100	0	352	39	2	14	44	1.57
39566873--39567081	34	6.3	34	81	7	252	42	2	10	44	1.53
39566871--39567061	65	2.9	64	92	3	310	41	2	10	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39566873--39567081	99	2.1	98	84	5	269	42	2	10	44	1.53
39567957--39568001	18	2.4	19	88	3	65	35	40	4	20	1.72
39568551--39569261	113	6.3	113	84	5	911	31	24	20	22	1.98
39577235--39577286	6	8.7	6	100	0	104	0	34	48	17	1.48
39577449--39577498	25	2.0	25	84	7	66	46	0	0	54	1.00
39581495--39581545	22	2.5	20	84	9	66	29	21	3	45	1.70
39582704--39582739	17	2.0	18	89	10	56	0	27	0	72	0.85
39582793--39582845	22	2.5	22	87	9	74	18	3	5	71	1.21
39585196--39585390	98	2.0	99	91	1	320	42	10	24	22	1.84
39592839--39592886	24	2.0	24	100	0	96	41	20	20	16	1.90
39594813--39594909	29	3.3	29	74	5	106	31	18	19	29	1.96
39603882--39603915	3	11.3	3	100	0	68	64	0	0	35	0.94
39610326--39610355	16	1.9	15	93	6	51	56	0	26	16	1.40
39612592--39612649	27	2.2	26	78	6	62	24	8	8	58	1.56
39614701--39614751	26	1.9	27	84	4	68	66	0	5	27	1.14
39617417--39617451	16	2.2	16	89	0	52	48	0	0	51	1.00
39620196--39620283	35	2.6	34	83	7	99	60	3	2	34	1.26
39620209--39620281	33	2.2	33	82	4	85	57	4	2	35	1.32
39620220--39620308	26	3.3	26	76	15	85	59	3	1	35	1.21
39620660--39620692	3	11.0	3	100	0	66	66	0	0	33	0.92
39621266--39621306	9	4.7	9	90	3	66	85	0	0	14	0.60
39622259--39622375	43	2.7	43	84	4	137	29	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39622255--39622375	44	2.8	45	83	3	149	29	19	18	33	1.95
39622408--39622597	50	3.8	50	70	5	152	23	25	23	27	2.00
39622382--39622589	99	2.1	100	91	2	339	24	23	22	29	1.99
39622382--39622539	50	3.2	50	70	4	140	24	22	22	31	1.99
39622792--39622949	44	3.7	44	88	4	207	28	25	17	27	1.98
39625309--39625368	25	2.4	25	83	8	68	61	1	15	21	1.42
39629771--39629805	17	2.1	17	94	0	61	51	0	11	37	1.38
39629937--39629993	3	19.0	3	100	0	114	66	0	0	33	0.92
39634354--39634401	16	3.0	16	87	0	60	31	22	4	41	1.73
39634372--39634406	16	2.2	16	89	0	52	34	28	0	37	1.58
39638181--39638219	17	2.3	17	86	0	51	43	7	2	46	1.46
39638976--39639033	29	2.1	27	87	12	84	43	3	3	50	1.36
39639379--39639414	20	1.9	20	88	11	58	52	5	8	33	1.55
39642125--39642183	26	2.3	26	88	5	84	28	10	13	47	1.75
39642331--39642378	6	8.0	6	90	0	69	16	27	0	56	1.41
39642330--39642377	12	4.0	12	88	0	78	16	25	0	58	1.38
39642330--39642378	18	2.7	18	96	0	89	16	26	0	57	1.40
39645775--39645821	25	1.9	25	82	4	60	14	23	21	40	1.90
39645927--39646035	24	4.5	24	71	15	71	18	21	20	40	1.92
39653148--39653214	27	2.6	27	78	17	63	17	22	22	37	1.94
39653246--39653293	25	1.9	25	91	0	78	20	29	16	33	1.95
39653244--39653302	25	2.4	24	80	8	73	18	27	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39659267--39659373	38	2.8	38	83	5	126	30	23	20	25	1.98
39669663--39669765	30	3.4	30	93	2	172	41	0	23	34	1.55
39670300--39670324	2	12.5	2	100	0	50	48	0	0	52	1.00
39671342--39671381	14	2.9	14	84	0	53	32	7	17	42	1.77
39672544--39672601	30	1.9	30	100	0	116	25	13	20	39	1.90
39674058--39674103	12	3.6	13	75	16	51	41	0	56	2	1.11
39674037--39674095	31	1.9	31	85	0	82	38	0	57	3	1.15
39674037--39674109	25	3.0	25	74	11	71	42	0	54	2	1.14
39677626--39677689	28	2.3	28	83	2	76	48	32	3	15	1.61
39677709--39677756	21	2.3	21	79	10	55	43	35	2	18	1.62
39683444--39683489	19	2.4	19	85	3	56	54	0	2	43	1.12
39683453--39683531	30	2.6	31	86	5	110	50	0	0	49	1.00
39683478--39683567	32	3.0	29	69	20	67	51	1	1	46	1.15
39684645--39684675	5	6.2	5	100	0	62	0	38	19	41	1.51
39685605--39685649	23	1.9	24	86	4	65	55	2	6	35	1.38
39685767--39685839	19	3.8	19	75	8	67	32	1	1	64	1.11
39685820--39685857	15	2.4	16	82	8	51	36	0	2	60	1.11
39685898--39685978	16	5.0	16	73	19	69	33	1	1	64	1.10
39685909--39685977	8	8.5	8	82	7	77	31	1	0	66	1.00
39685903--39685977	24	3.1	25	80	5	91	33	1	1	64	1.11
39685919--39685981	32	2.0	32	90	6	101	34	1	0	63	1.04
39686713--39686889	91	1.9	91	83	0	228	25	22	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39688733--39689345	307	2.0	307	98	0	1181	35	21	18	24	1.95
39697497--39697766	51	5.3	51	94	0	477	34	15	21	28	1.94
39699203--39699252	21	2.5	20	84	9	66	42	6	6	46	1.53
39702781--39702815	15	2.3	15	95	0	61	65	11	0	22	1.24
39703055--39703092	18	2.1	19	90	5	60	42	0	13	44	1.43
39703173--39703215	22	2.0	21	95	4	77	55	4	4	34	1.41
39703173--39703229	22	2.6	21	86	5	60	54	3	5	36	1.40
39703222--39703266	21	2.1	21	84	15	58	75	6	0	17	1.01
39703226--39703264	19	2.1	19	85	9	53	74	7	0	17	1.05
39705656--39705724	35	2.0	35	88	0	102	56	0	2	40	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221