genome.fa.s26.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  190  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55925749--55925869	51	2.4	51	87	2	163	32	24	0	42	1.61
55930249--55930611	124	2.9	123	87	1	503	32	21	15	30	1.95
55933310--55933356	19	2.5	19	86	6	60	25	21	10	42	1.85
55936091--55936141	9	5.4	9	77	13	50	60	3	1	33	1.26
55936095--55936140	19	2.3	20	82	14	60	63	4	2	30	1.26
55937886--55938071	97	1.9	97	85	3	257	32	8	5	53	1.54
55938394--55938444	22	2.3	23	80	12	63	25	0	9	64	1.24
55938916--55938982	19	3.5	19	69	15	66	34	2	0	62	1.10
55938923--55938984	17	3.4	17	71	16	61	33	3	0	62	1.11
55938920--55939041	38	3.2	39	91	6	196	34	3	0	62	1.12
55938998--55939057	31	1.9	31	93	6	104	41	1	0	56	1.09
55943954--55944020	31	2.2	31	91	0	107	23	38	20	16	1.92
55949358--55949410	26	2.0	26	100	0	106	49	11	11	28	1.73
55951120--55951144	10	2.5	10	100	0	50	92	0	8	0	0.40
55951248--55951614	109	3.4	103	86	10	495	34	15	16	33	1.90
55951248--55951662	104	3.9	107	88	7	466	35	14	15	33	1.88
55951655--55951947	110	2.6	110	87	6	396	31	16	15	36	1.89
55960722--55960773	16	3.2	16	83	0	68	28	3	30	36	1.75
55961008--55961042	18	2.0	17	88	5	52	54	0	0	45	0.99
55960902--55961210	157	2.0	156	95	0	555	44	2	4	47	1.39
55961145--55961186	15	2.7	16	82	14	52	52	2	0	45	1.13
55961154--55961192	15	2.7	15	88	7	55	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55961263--55961314	15	3.6	15	80	12	56	53	1	0	44	1.11
55961148--55961661	120	4.3	120	96	1	928	49	5	2	42	1.38
55961383--55961554	15	11.6	15	65	21	60	50	4	1	43	1.33
55963237--55963366	6	21.7	6	100	0	260	33	0	16	50	1.45
55970398--55970441	11	3.9	11	81	3	52	22	27	0	50	1.50
55978996--55979020	12	2.1	12	100	0	50	36	8	16	40	1.77
55979536--55979560	13	1.9	13	100	0	50	72	28	0	0	0.86
55980627--55980671	18	2.4	18	82	10	56	35	0	2	62	1.08
55983438--55983467	15	2.0	15	93	0	51	30	0	0	70	0.88
55983660--55983717	11	5.3	11	72	0	53	63	12	5	18	1.46
55983725--55983749	13	1.9	13	100	0	50	72	28	0	0	0.86
55985355--55985442	46	1.9	46	92	0	149	50	20	5	23	1.70
55987678--55987974	47	6.3	47	95	1	531	30	28	8	32	1.86
55987678--55987974	143	2.1	142	96	1	551	30	28	8	32	1.86
55994707--55994758	24	2.2	24	89	0	77	55	9	1	32	1.43
55996676--55996727	24	2.2	24	89	0	77	55	9	1	32	1.43
55997828--55997878	25	2.1	25	85	3	68	54	13	0	31	1.39
56004907--56004968	24	2.6	24	97	0	115	33	29	12	24	1.92
56004950--56004989	21	1.9	21	84	0	53	35	22	12	30	1.91
56005321--56005357	15	2.5	15	90	0	56	13	16	10	59	1.61
56005654--56005750	49	2.0	49	93	0	167	63	6	6	23	1.40
56005776--56005810	16	2.2	16	89	0	52	62	0	8	28	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56017151--56017531	110	3.4	109	85	5	453	35	12	14	36	1.84
56017523--56017909	111	3.6	108	86	8	506	31	15	14	37	1.88
56017695--56017719	13	1.9	13	100	0	50	32	0	0	68	0.90
56024222--56024284	31	2.0	31	81	6	74	39	12	7	39	1.73
56025783--56025811	13	2.3	13	94	5	51	75	0	0	24	0.80
56025861--56025903	18	2.5	17	79	20	54	62	0	2	34	1.08
56026411--56026449	19	2.0	20	85	5	53	23	10	7	58	1.56
56026551--56026591	21	2.0	21	85	0	55	21	0	4	73	1.02
56026609--56026652	21	2.1	22	83	8	56	22	4	6	65	1.35
56026892--56026919	13	2.2	13	100	0	56	50	28	0	21	1.49
56028850--56028899	25	2.0	25	92	0	82	18	24	22	36	1.95
56031823--56032906	540	2.0	539	95	0	1936	29	22	14	33	1.93
56036383--56036429	21	2.2	21	100	0	94	55	0	4	40	1.19
56037430--56037682	125	2.0	125	99	0	497	33	15	14	36	1.88
56047818--56047999	98	1.9	96	90	5	296	37	1	19	40	1.62
56048050--56048294	126	1.9	126	92	1	411	36	15	19	28	1.92
56052309--56052348	7	5.7	7	100	0	80	57	15	0	27	1.38
56060904--56061370	231	2.0	231	96	0	855	38	21	4	35	1.73
56072558--56072769	96	2.2	98	81	6	247	36	16	9	36	1.83
56072788--56072887	49	2.0	49	86	9	141	35	1	3	61	1.18
56072796--56072861	29	2.2	28	82	12	71	34	0	3	62	1.11
56072788--56072887	48	2.0	51	86	9	145	35	1	3	61	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56074686--56074711	13	2.0	13	100	0	52	38	15	7	38	1.76
56076840--56076869	2	15.0	2	92	0	51	46	50	3	0	1.18
56077295--56077439	71	2.0	71	94	0	254	36	24	15	24	1.93
56082384--56082511	69	1.9	68	83	4	168	33	16	25	24	1.96
56094221--56094278	30	2.0	28	86	6	80	17	18	39	24	1.92
56104698--56104758	9	6.8	9	94	0	86	22	6	24	45	1.76
56113470--56113530	20	3.0	20	68	13	54	37	3	6	52	1.44
56125220--56125455	25	9.6	23	71	17	131	36	20	23	19	1.95
56125217--56125455	49	4.9	48	75	16	170	36	20	23	19	1.95
56125317--56125455	74	1.9	74	83	5	183	36	21	24	17	1.94
56129563--56129603	3	13.7	3	100	0	82	31	0	0	68	0.90
56134790--56134823	3	11.0	3	93	6	59	64	0	0	35	0.94
56136487--56136880	45	8.7	44	72	8	229	27	21	18	31	1.97
56136383--56136880	228	2.2	228	88	2	714	27	21	18	32	1.96
56137131--56137441	45	6.9	46	83	4	339	29	21	18	30	1.97
56138733--56138769	3	12.7	3	94	5	67	0	29	0	70	0.88
56143199--56143232	3	11.0	3	87	6	50	61	0	2	35	1.11
56143201--56143232	16	2.0	16	93	0	55	59	0	3	37	1.13
56146830--56146869	14	2.9	14	84	0	53	32	7	17	42	1.77
56146853--56146892	20	2.0	20	90	0	62	27	10	12	50	1.72
56146838--56146904	34	1.9	35	90	3	109	31	8	13	46	1.74
56146832--56146908	14	5.0	15	71	20	52	32	9	15	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56150481--56150549	16	4.2	16	96	3	129	24	0	37	37	1.56
56150481--56150549	33	2.1	32	97	2	129	24	0	37	37	1.56
56150765--56150819	15	3.4	16	80	16	53	50	1	0	47	1.11
56150785--56150819	18	2.0	17	88	5	52	54	0	0	45	0.99
56150734--56151420	120	5.8	116	88	5	691	51	3	1	42	1.30
56150905--56151060	18	8.0	18	67	24	77	53	1	1	42	1.19
56150971--56151013	22	1.9	23	85	4	61	60	2	0	37	1.10
56150875--56151420	241	2.3	239	93	2	925	52	3	1	42	1.27
56151237--56151301	18	4.2	16	72	18	57	60	0	1	38	1.07
56151264--56151301	18	2.2	17	90	4	58	63	0	2	34	1.09
56151544--56151622	25	3.3	25	79	16	112	40	7	17	34	1.78
56153265--56153299	14	2.5	14	100	0	70	45	20	5	28	1.73
56155351--56155670	173	1.8	174	82	2	410	36	15	9	39	1.80
56162724--56162814	23	3.8	23	77	12	85	37	19	20	21	1.95
56162726--56162792	24	2.9	24	84	8	77	40	20	19	19	1.92
56165908--56166069	87	1.9	86	85	2	227	27	14	22	35	1.93
56168339--56168411	28	2.6	28	82	8	87	23	12	6	57	1.59
56169062--56169086	13	1.9	13	100	0	50	24	16	12	48	1.79
56169680--56169759	29	2.8	29	82	3	90	42	18	27	11	1.84
56169734--56169776	17	2.5	18	88	7	63	39	20	27	11	1.88
56171310--56171420	50	2.2	50	82	3	125	37	20	19	21	1.94
56173970--56174033	13	4.9	13	78	0	65	35	6	18	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56180085--56180231	58	2.5	58	80	3	143	32	13	21	31	1.92
56182375--56182573	102	2.0	102	87	2	292	40	12	18	29	1.87
56187994--56188126	51	2.6	51	78	0	167	39	6	14	40	1.70
56191012--56191148	51	2.7	51	75	0	157	39	6	14	39	1.72
56193451--56193507	22	2.7	22	79	15	66	17	3	0	78	0.88
56193451--56193507	11	5.4	11	78	12	57	17	3	0	78	0.88
56206713--56206767	28	2.0	28	88	0	83	45	16	12	25	1.83
56208692--56208799	46	2.4	46	81	9	125	30	6	25	37	1.81
56209828--56209920	35	2.5	37	84	8	120	49	0	1	49	1.07
56209867--56209920	8	6.9	8	76	16	51	53	0	1	44	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221