genome.fa.s26.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  194  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56810804--56810890	28	3.1	28	69	17	74	43	1	2	52	1.21
56810947--56811368	137	2.9	138	82	8	418	46	4	3	44	1.42
56811095--56811129	18	2.0	17	88	5	52	45	0	0	54	0.99
56810981--56811195	70	3.1	68	66	18	156	45	3	4	46	1.40
56811145--56811358	50	4.2	51	62	20	122	46	5	3	44	1.41
56811071--56811398	156	2.1	156	96	0	611	46	6	3	43	1.45
56811251--56811299	15	2.9	18	80	20	61	44	0	0	55	0.99
56811251--56811305	15	3.4	16	80	16	53	43	0	1	54	1.10
56811450--56811540	45	2.0	45	85	2	121	37	28	6	27	1.82
56811521--56811588	16	4.2	16	92	0	118	39	33	0	26	1.57
56813432--56813486	27	2.1	26	83	10	67	27	9	21	41	1.83
56816203--56816241	19	2.0	20	90	5	62	23	15	28	33	1.95
56817924--56818164	50	4.7	50	85	3	284	26	21	29	21	1.99
56819829--56819879	15	3.3	15	83	8	57	47	1	19	31	1.61
56819842--56819888	15	3.1	15	81	3	58	48	0	14	36	1.44
56824696--56824854	33	4.7	34	69	7	101	33	15	22	28	1.94
56824697--56824887	101	1.9	101	82	4	242	32	16	24	26	1.96
56827085--56827118	15	2.1	17	89	10	54	52	2	0	44	1.16
56827453--56827494	20	2.1	20	90	0	66	30	0	0	69	0.89
56830750--56830805	20	2.5	22	83	11	71	41	0	0	58	0.98
56831850--56831875	11	2.4	11	100	0	52	0	0	11	88	0.52
56837336--56837676	169	2.0	169	97	0	646	41	17	20	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56844766--56845117	45	7.9	45	81	2	370	32	15	22	29	1.94
56846421--56846459	4	10.0	4	83	5	53	25	5	0	69	1.09
56846421--56846459	15	2.5	16	91	4	62	25	5	0	69	1.09
56849832--56849887	22	2.5	22	77	11	60	30	7	8	53	1.59
56850826--56850868	21	2.0	22	90	4	70	44	34	4	16	1.68
56853610--56853681	36	2.0	36	91	0	117	27	13	25	33	1.94
56870270--56870306	7	5.6	7	93	6	60	13	0	0	86	0.57
56870270--56870305	6	5.7	6	96	3	54	13	0	0	86	0.58
56870270--56870306	13	2.8	13	84	15	58	13	0	0	86	0.57
56870270--56870306	19	1.9	20	94	5	67	13	0	0	86	0.57
56870909--56870935	14	1.9	14	100	0	54	29	0	3	66	1.09
56871004--56871048	24	1.9	23	86	4	63	31	8	2	57	1.41
56870988--56871042	20	3.0	18	77	12	58	32	9	1	56	1.41
56871299--56871342	18	2.5	18	88	3	63	15	4	6	72	1.22
56879540--56879593	7	8.0	7	79	8	67	68	0	16	14	1.21
56879540--56879593	20	2.7	20	85	0	81	68	0	16	14	1.21
56881089--56881290	44	4.5	44	68	16	155	26	20	24	27	1.99
56880958--56881325	90	4.1	90	69	13	283	28	20	23	27	1.99
56880958--56881343	134	2.9	135	94	2	665	29	19	23	27	1.98
56881488--56882300	44	18.7	44	78	5	713	30	20	24	24	1.99
56881488--56882336	175	4.9	175	91	2	1252	30	20	24	24	1.99
56882185--56882337	40	3.8	40	76	11	157	32	22	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56915856--56915907	23	2.3	22	75	21	54	9	23	1	65	1.32
56919034--56919076	11	3.8	11	80	17	52	30	2	2	65	1.18
56922097--56922130	17	2.0	17	88	0	50	35	0	0	64	0.94
56922114--56922240	12	11.4	11	68	20	68	37	2	0	60	1.10
56922097--56922228	42	3.3	38	87	11	194	34	2	0	62	1.07
56922125--56922189	30	2.1	31	83	8	80	35	3	0	61	1.12
56922179--56922209	15	2.0	16	93	6	55	35	0	0	64	0.94
56922202--56922241	21	1.9	21	94	0	71	35	2	0	62	1.09
56926501--56926539	15	2.4	17	87	8	55	82	12	5	0	0.83
56927365--56927560	108	1.8	108	90	0	320	26	16	10	46	1.79
56928046--56928307	44	6.0	44	74	5	201	28	14	27	30	1.95
56928044--56928301	131	2.0	131	92	0	435	28	14	26	30	1.95
56928604--56929626	132	7.8	132	91	1	1506	29	18	23	27	1.98
56928864--56929320	44	10.4	43	64	10	145	28	18	24	28	1.98
56929592--56929900	43	7.3	42	69	15	208	32	24	19	22	1.97
56929680--56929875	40	4.8	40	75	14	191	32	22	20	24	1.98
56929593--56929935	126	2.7	126	93	0	587	32	23	20	23	1.98
56935571--56935620	26	1.9	26	100	0	100	24	26	12	38	1.90
56941324--56941379	25	2.4	24	82	8	62	62	1	1	33	1.16
56951747--56951782	18	2.0	18	88	0	54	63	13	5	16	1.47
56958812--56958861	26	2.0	25	84	4	64	46	4	0	50	1.20
56959504--56959553	13	3.8	13	81	2	55	50	2	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56960200--56960249	13	3.8	13	81	2	55	50	2	0	48	1.12
56958255--56960553	696	3.3	696	96	0	4234	38	14	11	34	1.83
56960751--56960782	16	2.1	16	94	5	57	43	6	0	50	1.27
56978113--56978161	21	2.3	22	82	13	66	38	2	0	59	1.09
56978435--56978483	19	2.7	19	70	17	50	59	0	4	36	1.17
56978473--56978540	9	7.3	9	78	8	57	73	1	1	23	1.00
56978468--56978540	28	2.6	28	84	2	94	71	1	1	26	1.02
56978455--56978540	37	2.3	38	80	7	88	68	1	1	29	1.04
56978794--56978886	10	9.3	10	72	12	66	25	4	1	68	1.14
56978785--56978865	19	4.2	19	69	10	65	30	2	0	66	1.05
56978785--56978875	29	3.1	29	79	9	96	29	2	1	67	1.10
56983738--56983811	33	2.3	33	88	2	105	44	16	5	33	1.70
56987254--56987294	20	2.0	20	85	9	55	56	4	0	39	1.21
56988835--56988882	26	1.9	25	83	8	62	60	4	0	35	1.16
56993202--56993295	48	2.0	48	85	8	129	20	12	26	40	1.88
56995714--56995807	48	2.0	48	87	8	138	19	10	27	42	1.84
57005920--57005980	28	2.1	29	81	3	70	65	3	4	26	1.28
57007513--57007547	16	2.1	16	89	5	52	42	2	0	54	1.15
57023361--57023401	4	10.2	4	100	0	82	24	0	24	51	1.49
57023651--57023706	23	2.4	23	76	11	60	62	0	5	32	1.18
57023653--57023706	22	2.4	21	76	11	54	62	0	5	31	1.18
57025517--57026653	44	25.8	44	73	9	615	27	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57025613--57025816	87	2.4	85	75	8	189	26	21	21	30	1.98
57025746--57026522	134	5.8	134	85	4	966	27	22	20	29	1.99
57025497--57026478	178	5.6	172	74	9	482	26	22	20	29	1.99
57025745--57026522	268	2.9	267	88	2	1070	26	22	20	29	1.99
57027922--57027954	7	4.9	7	92	7	59	15	12	0	72	1.12
57035261--57035291	16	1.9	16	93	0	53	19	22	6	51	1.69
57048832--57048965	63	2.1	63	86	2	180	44	6	21	26	1.77
57057361--57057408	15	3.2	14	77	13	51	43	0	0	56	0.99
57057370--57057414	22	2.0	22	83	8	56	37	0	0	62	0.96
57057632--57057684	19	3.1	19	67	30	55	33	18	3	43	1.68
57057635--57057695	32	2.0	29	90	9	95	32	14	3	49	1.60
57077500--57077599	45	2.2	46	82	12	127	75	5	11	9	1.19
57078507--57078532	13	2.0	13	100	0	52	69	0	15	15	1.20
57079768--57080264	44	11.3	44	69	11	196	28	20	23	27	1.99
57079990--57080264	46	6.2	46	71	11	180	27	20	24	28	1.99
57079901--57080237	175	1.9	174	83	4	428	27	20	24	27	1.99
57079763--57080283	219	2.4	215	77	11	526	28	20	24	27	1.99
57080228--57080409	44	4.3	43	76	4	172	30	21	24	23	1.99
57080253--57080409	87	1.8	83	86	5	224	30	23	21	24	1.99
57080253--57080409	40	3.7	41	77	9	165	30	23	21	24	1.99
57084339--57084377	19	2.1	19	95	0	69	38	0	43	17	1.50
57085769--57085953	46	4.0	46	92	0	298	29	28	8	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57087177--57087225	17	2.9	17	90	6	73	53	20	0	26	1.46
57088761--57088836	25	2.7	29	90	9	115	46	7	21	25	1.78
57089509--57089547	14	2.6	16	80	19	57	35	0	0	64	0.94
57091366--57091428	23	2.6	25	78	14	62	44	3	1	50	1.27
57092241--57092270	14	2.1	15	93	6	53	56	0	0	43	0.99
57098634--57098695	30	2.0	32	87	12	94	54	0	4	40	1.22
57106816--57106846	16	1.9	16	93	0	53	54	0	3	41	1.16
57107160--57107299	43	3.3	43	76	11	117	31	30	15	22	1.95
57107558--57107623	34	1.9	35	84	9	91	54	3	1	40	1.25
57113321--57113432	40	2.8	41	84	2	154	27	31	19	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221