genome.fa.s26.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  111  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34081400--34081463	27	2.4	27	85	12	80	31	21	26	20	1.98
34081760--34081799	17	2.4	17	100	0	80	37	22	12	27	1.90
34081769--34081816	17	2.9	16	84	9	53	41	18	8	31	1.80
34083246--34083277	16	2.0	16	93	0	55	25	15	0	59	1.36
34083505--34083645	50	2.8	50	84	7	178	30	26	14	27	1.95
34091457--34091516	30	2.0	31	86	3	86	40	0	40	20	1.52
34091631--34091691	30	2.0	31	90	3	97	36	0	44	19	1.51
34091739--34091775	9	4.1	9	92	0	65	29	10	13	45	1.77
34094031--34094068	18	2.1	18	85	9	51	5	28	0	65	1.14
34102076--34102133	30	1.9	30	89	0	89	39	6	24	29	1.81
34102367--34102544	51	3.6	48	78	11	180	24	14	28	32	1.94
34102557--34102642	44	1.9	45	90	2	138	24	16	23	36	1.94
34104463--34104642	95	1.9	95	94	2	317	28	16	23	31	1.96
34105165--34105220	26	2.2	26	90	0	85	12	10	28	48	1.74
34106747--34106842	47	2.0	47	100	0	192	21	10	19	47	1.79
34113598--34113648	10	5.2	10	72	13	52	56	1	11	29	1.46
34113584--34113660	29	2.7	29	78	6	77	57	1	11	29	1.43
34113951--34113995	22	2.0	22	87	8	65	66	2	6	24	1.27
34113997--34114054	3	19.3	3	77	7	55	60	3	6	29	1.39
34113946--34114005	22	3.0	20	72	13	52	63	1	5	30	1.25
34113946--34114008	21	3.0	22	68	15	53	63	1	4	30	1.24
34116926--34116959	17	1.9	17	88	5	50	58	20	2	17	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34117419--34117471	21	2.5	22	78	9	65	60	3	9	26	1.45
34123796--34123862	34	1.9	35	90	3	109	34	8	10	46	1.70
34124020--34124070	26	2.2	24	78	21	56	60	5	0	33	1.21
34140124--34140183	29	2.1	29	93	0	102	43	18	8	30	1.79
34142806--34142881	34	2.3	34	81	9	93	30	13	18	38	1.89
34145091--34145123	15	2.2	15	94	0	57	27	18	15	39	1.90
34167824--34167853	15	2.0	15	100	0	60	53	6	20	20	1.67
34179780--34179804	12	2.1	12	100	0	50	24	36	24	16	1.94
34179964--34180022	9	6.6	9	90	0	91	38	25	10	25	1.87
34179964--34180039	27	2.8	27	85	0	107	42	25	7	25	1.81
34179964--34180039	9	8.4	9	89	0	89	42	25	7	25	1.81
34179964--34180031	18	3.8	18	90	0	109	41	25	8	25	1.84
34180144--34180187	18	2.4	18	88	0	61	13	2	43	40	1.57
34181761--34181935	9	18.3	10	66	17	52	62	5	1	30	1.24
34181874--34181934	9	6.9	9	76	14	56	68	1	0	29	0.99
34181864--34181935	35	2.0	36	84	7	94	66	2	0	30	1.06
34188815--34188849	18	1.9	18	88	11	54	42	2	17	37	1.64
34201761--34201785	12	2.1	12	100	0	50	24	36	24	16	1.94
34201937--34202011	9	8.4	9	83	2	89	42	24	8	25	1.81
34201937--34202003	18	3.8	18	90	4	109	41	23	8	25	1.83
34202117--34202160	18	2.4	18	88	0	61	13	2	43	40	1.57
34203733--34203908	9	18.3	10	66	16	52	63	5	1	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34203846--34203907	9	6.9	9	75	14	56	69	1	0	29	0.98
34203836--34203909	36	2.0	37	84	7	98	67	2	0	29	1.04
34210837--34210872	19	1.9	19	88	5	56	41	2	16	38	1.63
34211450--34211518	9	7.6	9	74	9	50	28	4	1	65	1.21
34216343--34216404	32	1.9	32	90	0	97	43	9	4	41	1.59
34221552--34221788	50	4.6	50	78	6	183	24	27	20	27	1.99
34225267--34225305	19	2.1	19	100	0	78	30	25	10	33	1.89
34233038--34233062	12	2.1	12	100	0	50	24	36	24	16	1.94
34233223--34233281	9	6.6	9	90	0	91	38	25	10	25	1.87
34233223--34233298	27	2.8	27	85	0	107	42	25	7	25	1.81
34233223--34233298	9	8.4	9	89	0	89	42	25	7	25	1.81
34233223--34233290	18	3.8	18	90	0	109	41	25	8	25	1.84
34233403--34233446	18	2.4	18	88	0	61	13	2	43	40	1.57
34235108--34235155	21	2.3	20	85	3	60	56	4	2	37	1.30
34235138--34235198	9	6.9	9	75	14	56	68	1	0	29	0.99
34235128--34235200	35	2.0	37	84	10	98	67	2	0	30	1.05
34247596--34247657	32	1.9	32	90	0	97	43	9	4	41	1.59
34252801--34253037	50	4.6	50	78	6	183	24	27	20	27	1.99
34257694--34258042	40	8.7	40	98	0	617	22	28	20	29	1.98
34266386--34266684	40	7.7	40	91	5	497	22	27	20	29	1.98
34266386--34266684	152	1.9	159	93	5	522	22	27	20	29	1.98
34275141--34275487	40	8.7	40	95	0	622	22	27	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34279379--34279478	43	2.3	43	100	0	200	23	15	35	27	1.94
34279828--34279932	39	2.6	39	83	4	129	27	22	26	22	1.99
34279789--34279932	40	3.6	40	78	10	125	25	23	27	23	2.00
34279907--34280023	40	2.9	39	84	5	153	23	21	29	25	1.99
34282583--34282921	47	7.1	47	91	2	507	31	9	30	28	1.89
34282583--34282921	49	7.1	49	90	4	514	31	9	30	28	1.89
34283040--34283118	37	2.1	37	88	0	113	25	18	30	25	1.98
34289791--34289962	79	2.2	80	89	3	258	25	27	21	25	1.99
34289791--34290015	40	5.7	40	82	5	242	25	26	22	25	2.00
34289791--34290015	119	1.9	120	83	6	296	25	26	22	25	2.00
34294515--34294730	40	5.5	40	90	3	314	22	22	27	27	1.99
34294515--34294729	78	2.7	79	87	5	310	22	22	27	27	1.99
34299628--34299672	22	2.0	22	100	0	90	37	0	13	48	1.42
34301084--34301154	33	2.1	34	82	7	83	28	26	19	25	1.99
34301128--34301182	28	2.0	28	85	0	74	29	25	20	25	1.99
34305687--34305731	15	2.9	15	81	12	54	13	13	20	53	1.72
34316828--34316950	47	2.7	44	77	11	133	30	11	30	26	1.91
34317022--34317105	39	2.2	39	82	4	98	17	19	32	30	1.95
34319395--34319664	39	6.9	39	94	3	449	20	20	29	29	1.98
34323358--34323478	47	2.6	45	80	6	136	31	10	30	27	1.90
34323552--34323636	40	2.2	40	84	2	109	17	20	31	30	1.95
34324665--34324766	36	2.8	36	93	3	168	25	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34324907--34325101	48	4.2	48	94	3	328	30	28	6	33	1.83
34325000--34325211	108	1.9	110	94	2	374	31	26	7	34	1.83
34325109--34325370	48	5.5	48	93	3	449	30	28	6	33	1.83
34325109--34325370	143	1.8	144	92	3	449	30	28	6	33	1.83
34324907--34325370	204	2.3	203	89	8	717	30	28	7	33	1.84
34326828--34326873	24	1.9	24	82	8	58	41	23	10	23	1.86
34344452--34344477	10	2.6	10	100	0	52	46	19	11	23	1.82
34344983--34345026	19	2.5	17	82	13	54	45	0	25	29	1.54
34345116--34345175	30	2.0	30	83	3	75	41	0	38	20	1.52
34345389--34345425	9	4.1	9	85	0	56	27	10	16	45	1.80
34345478--34345508	9	3.4	9	90	0	53	38	22	12	25	1.90
34346470--34346570	27	3.7	27	98	0	193	19	27	27	24	1.99
34348856--34348919	10	6.4	10	80	16	62	70	4	0	25	1.06
34348873--34348929	21	2.7	21	83	8	64	70	5	0	24	1.08
34348859--34348918	31	1.9	32	86	3	86	68	5	0	26	1.10
34349243--34349275	17	2.0	17	88	5	50	48	3	0	48	1.17
34349653--34349684	14	2.1	16	88	11	50	50	9	6	34	1.60
34349925--34349964	21	2.0	20	85	5	53	55	0	0	45	0.99
34358309--34358380	30	2.4	30	83	4	83	8	36	9	45	1.67
34358703--34358741	15	2.6	15	91	0	60	12	15	41	30	1.85
34361228--34361301	38	2.0	37	82	12	89	59	8	1	31	1.35
34364567--34364779	51	4.2	51	92	0	347	27	23	15	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34370130--34370208	39	2.0	39	92	0	131	56	6	17	18	1.61
34371506--34371557	24	2.2	24	85	0	68	50	11	3	34	1.57
34375544--34375595	24	2.2	24	85	0	68	50	7	3	38	1.50
34386434--34386497	21	3.0	20	70	18	58	53	7	4	34	1.51
34386424--34386482	21	2.8	21	71	21	59	49	8	8	33	1.64
34386424--34386490	22	3.1	22	72	20	68	52	8	7	31	1.61
34389259--34389297	20	2.0	20	94	0	69	48	0	2	48	1.15
34389316--34389402	33	2.7	32	79	13	106	44	17	9	28	1.79
34389393--34389433	21	2.0	21	100	0	82	51	14	4	29	1.63
34389383--34389448	35	1.9	34	84	9	89	46	15	4	33	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221