genome.fa.s26.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  96  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29267330--29267413	41	2.0	41	95	4	152	25	10	10	53	1.67
29267477--29267546	29	2.4	29	79	9	88	35	11	27	25	1.90
29267535--29267613	30	2.7	30	86	2	106	39	13	29	17	1.89
29269602--29269743	30	4.7	30	80	3	160	18	19	23	38	1.93
29272200--29272422	40	5.6	40	85	3	236	26	27	21	24	1.99
29272354--29272431	40	1.9	41	82	10	97	26	28	21	23	1.99
29275935--29276274	68	5.0	68	82	2	360	25	22	17	33	1.96
29275935--29276274	136	2.5	136	85	0	439	25	22	17	33	1.96
29281149--29281225	40	1.9	40	100	0	154	23	25	7	42	1.81
29284357--29284489	29	4.7	29	79	3	137	33	25	15	25	1.95
29284408--29284489	26	3.0	27	82	12	89	34	25	17	23	1.96
29284343--29284489	58	2.6	55	76	11	152	31	25	15	27	1.96
29287245--29287426	28	6.5	28	95	0	294	26	13	28	32	1.93
29298130--29298307	35	5.1	35	79	5	180	28	14	22	35	1.93
29301566--29301678	40	2.8	40	92	4	176	25	29	22	23	1.99
29301948--29302024	24	3.2	24	65	17	68	40	10	10	38	1.74
29301944--29302041	49	2.0	49	100	0	196	40	12	10	36	1.77
29303486--29303526	21	1.9	22	85	14	59	56	24	4	14	1.58
29330105--29330329	40	5.7	40	84	5	269	24	21	28	25	1.99
29330192--29330362	80	2.2	79	83	6	204	26	20	28	24	1.99
29333998--29334055	4	14.8	4	82	13	68	22	1	3	72	1.09
29334080--29334113	16	2.1	17	88	5	52	20	8	0	70	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29334077--29334120	20	2.1	21	84	12	56	22	9	0	68	1.18
29334250--29334290	15	2.7	15	92	7	66	29	4	2	63	1.28
29334293--29334363	6	10.8	6	76	16	61	11	2	7	78	1.04
29334293--29334363	13	5.4	12	77	14	61	11	2	7	78	1.04
29336444--29336541	28	3.5	28	87	0	133	28	11	27	32	1.91
29337265--29337708	23	19.1	23	71	9	301	27	13	18	41	1.87
29337265--29337708	47	9.5	46	76	6	389	27	13	18	41	1.87
29337265--29337697	93	4.6	93	90	0	677	27	13	18	40	1.88
29344001--29344126	28	4.5	28	87	0	171	29	11	26	32	1.91
29345576--29345601	12	2.2	12	100	0	52	50	7	0	42	1.31
29346048--29346145	27	3.5	28	85	2	117	26	11	28	33	1.91
29346076--29346134	28	2.1	27	93	3	82	30	10	25	33	1.89
29353526--29353552	12	2.2	12	100	0	54	51	7	0	40	1.30
29353999--29354096	27	3.5	28	85	2	117	26	11	28	33	1.91
29354027--29354085	28	2.1	27	93	3	82	30	10	25	33	1.89
29355965--29356405	23	19.0	23	72	12	292	26	13	19	40	1.88
29355962--29356394	93	4.6	93	92	0	713	27	13	18	40	1.89
29363012--29363220	43	4.9	43	80	6	212	30	27	17	24	1.97
29366274--29366369	47	2.0	47	100	0	192	45	18	13	21	1.84
29368364--29368398	6	5.8	6	89	0	52	28	0	2	68	1.04
29368366--29368405	18	2.2	19	90	4	64	25	0	5	70	1.08
29377071--29377382	154	2.0	154	91	1	500	35	8	13	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29378898--29378943	24	1.9	24	86	8	67	26	6	17	50	1.70
29383282--29383354	31	2.4	31	79	6	78	42	9	1	46	1.45
29388387--29388425	12	3.2	12	85	0	51	20	23	5	51	1.67
29388673--29388814	49	2.9	49	81	2	169	23	28	20	26	1.99
29389149--29389207	30	2.0	30	86	0	82	32	23	8	35	1.85
29393541--29393734	48	4.0	48	81	2	237	27	21	28	22	1.99
29402286--29402310	10	2.5	10	100	0	50	8	52	8	32	1.60
29410152--29410230	41	1.9	41	89	0	122	21	30	13	34	1.92
29418545--29419171	315	2.0	315	100	0	1254	33	16	22	27	1.95
29419791--29420107	30	10.6	30	76	7	252	35	12	24	26	1.92
29419821--29420081	90	2.9	89	80	7	278	35	12	25	26	1.91
29419971--29420051	29	2.7	30	84	3	119	37	13	25	23	1.92
29419786--29420115	119	2.8	117	84	5	405	35	12	25	26	1.91
29425682--29425739	22	2.6	22	86	2	80	34	34	3	27	1.74
29426042--29426102	10	6.0	10	79	12	63	77	0	8	14	0.99
29426039--29426099	22	2.8	22	90	2	88	78	0	8	13	0.95
29426039--29426091	11	4.8	11	90	0	88	77	0	7	15	0.98
29428324--29428411	19	4.5	19	72	21	74	76	2	15	5	1.08
29428324--29428397	18	4.1	18	76	15	73	77	2	14	5	1.07
29428344--29428410	15	4.5	15	76	12	59	74	2	16	5	1.14
29428316--29428399	35	2.4	36	82	9	111	75	3	15	5	1.14
29432512--29432554	22	1.9	23	90	4	70	37	32	4	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29434438--29434483	8	5.5	8	80	10	56	8	43	2	45	1.47
29439626--29439893	136	2.0	137	84	2	360	31	25	21	21	1.98
29444434--29444536	43	2.4	43	95	0	188	22	13	34	29	1.92
29444518--29444591	29	2.6	29	86	4	96	25	14	32	27	1.95
29444907--29445011	40	2.6	41	76	10	99	25	24	26	22	2.00
29444986--29445142	40	3.9	40	89	0	224	26	23	25	24	2.00
29444944--29445136	80	2.4	80	81	3	210	27	23	24	24	2.00
29444907--29445134	120	1.9	120	82	5	291	26	23	25	24	2.00
29445818--29445896	37	2.1	37	90	0	122	25	31	18	24	1.98
29446014--29446384	47	7.7	47	96	0	607	30	29	8	31	1.88
29446269--29446343	22	3.3	22	64	10	60	30	28	10	30	1.90
29451052--29451505	47	9.6	47	92	2	712	32	8	29	29	1.86
29451052--29451505	96	4.8	94	91	3	712	32	8	29	29	1.86
29453543--29453969	47	9.1	47	93	0	719	32	9	29	29	1.88
29454088--29454166	37	2.1	37	90	0	122	24	18	31	25	1.98
29457450--29457547	27	3.5	28	90	2	135	26	13	28	31	1.94
29457478--29457560	27	3.0	27	87	5	96	30	12	25	32	1.92
29457450--29457561	28	4.0	27	83	6	98	28	12	25	33	1.92
29462023--29462419	47	8.4	47	92	1	632	32	8	29	28	1.87
29462023--29462419	143	2.8	141	91	1	641	32	8	29	28	1.87
29462538--29462616	37	2.1	37	86	4	106	25	17	30	26	1.97
29464481--29464583	43	2.4	43	100	0	206	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29464565--29464638	29	2.6	29	89	4	105	25	16	32	25	1.96
29464954--29465135	40	4.6	40	84	5	208	24	23	27	24	2.00
29468131--29468476	47	7.3	47	91	1	521	33	8	29	28	1.87
29468131--29468421	96	3.1	96	94	2	514	34	8	27	30	1.86
29468595--29468673	37	2.1	37	86	4	106	25	17	30	26	1.97
29479510--29479579	25	2.8	25	93	0	122	27	24	18	30	1.98
29483827--29484467	315	2.0	318	88	4	939	30	13	22	33	1.92
29485334--29485438	50	2.1	50	94	0	183	23	21	32	21	1.98
29485350--29485484	50	2.7	50	85	0	162	27	22	29	20	1.98
29487932--29487968	18	2.1	18	94	0	65	27	18	21	32	1.97
29490728--29490794	34	2.0	34	82	5	82	53	4	4	37	1.41
29492054--29492100	24	2.0	24	83	8	60	38	19	23	19	1.93
29492482--29492575	47	2.0	47	97	0	179	46	5	27	20	1.72
29496471--29496519	20	2.5	20	86	0	71	18	20	6	55	1.64
29499922--29499962	21	2.0	20	85	4	55	46	26	14	12	1.80
29506745--29506796	20	2.5	21	81	12	63	55	5	9	28	1.55
29509796--29509991	50	3.9	49	75	5	187	25	17	27	29	1.98
29509800--29509983	101	1.8	101	89	4	291	25	17	26	29	1.98
29513897--29514233	50	6.7	51	82	6	377	28	15	26	29	1.96
29513897--29514239	101	3.4	101	89	4	478	28	15	26	29	1.96
29514431--29514504	38	1.9	38	83	5	96	41	2	22	32	1.68
29516323--29516590	40	6.7	40	94	0	464	22	26	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29524962--29525229	40	6.7	40	94	0	464	22	26	20	30	1.98
29532602--29532734	68	2.0	68	93	0	230	29	13	15	42	1.85
29540720--29540941	39	5.6	39	81	7	206	26	20	27	25	1.99
29551436--29551484	24	2.0	24	100	0	98	38	20	12	28	1.89
29558149--29558411	40	6.6	40	88	3	307	26	28	20	24	1.99
29558343--29558420	40	1.9	41	82	10	97	26	28	21	23	1.99
29565341--29565603	40	6.6	40	88	3	307	26	28	20	24	1.99
29565535--29565612	40	1.9	41	82	10	97	26	28	21	23	1.99
29569381--29569508	69	1.9	68	90	3	204	29	17	10	42	1.83
29573491--29573516	11	2.4	11	100	0	52	23	0	15	61	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221