genome.fa.s26.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  219  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63916053--63916284	84	2.8	84	82	5	256	31	21	24	23	1.98
63916383--63916436	6	9.0	6	100	0	108	16	50	0	33	1.46
63920182--63920236	20	2.7	21	75	8	69	61	3	0	34	1.13
63920182--63920244	20	3.3	19	76	8	65	63	3	0	33	1.10
63920211--63920269	30	2.0	30	86	0	82	64	1	0	33	1.04
63940593--63940656	13	4.9	13	88	0	92	39	25	9	26	1.86
63952127--63952189	30	2.1	31	96	3	119	46	19	6	28	1.74
63960065--63960110	22	2.1	22	87	0	65	19	8	15	56	1.65
63964126--63964193	30	2.2	31	81	2	84	41	14	11	32	1.82
63964133--63964192	31	2.0	30	86	3	84	43	11	10	35	1.75
63967939--63968000	26	2.4	28	76	20	71	27	4	0	67	1.10
63969491--63969528	18	2.1	18	95	0	67	23	21	10	44	1.83
63969904--63970018	58	2.0	59	81	5	135	36	2	9	51	1.49
63974555--63974671	44	2.7	44	79	11	141	29	29	17	23	1.97
63975088--63975141	26	2.0	25	86	10	72	38	5	0	55	1.23
63975092--63975141	25	2.0	25	88	7	75	40	6	0	54	1.25
63975767--63976038	124	2.2	125	87	2	395	31	16	16	34	1.92
63976093--63976171	33	2.4	34	80	8	90	48	11	2	37	1.53
63976111--63976299	34	5.5	34	72	8	157	48	16	1	33	1.56
63976069--63976291	106	2.1	106	92	3	371	48	18	2	30	1.60
63978453--63978841	141	2.9	132	83	6	435	27	11	20	40	1.87
63986323--63986390	30	2.4	26	79	13	73	30	7	7	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63987621--63987693	31	2.4	31	97	0	137	43	15	12	28	1.82
63991822--63991868	21	2.2	21	81	7	60	27	8	4	59	1.45
63995399--63995438	14	2.9	14	84	0	53	40	10	10	40	1.72
63999116--63999157	19	2.3	19	95	4	77	66	0	0	33	0.92
64002099--64002157	27	2.2	27	93	6	102	15	28	30	25	1.96
64004030--64004077	17	2.9	17	75	12	55	37	8	0	54	1.31
64004865--64004902	20	1.9	20	94	0	67	42	5	21	31	1.75
64006697--64006742	20	2.2	21	85	11	60	32	0	8	58	1.28
64008099--64008126	6	4.7	6	100	0	56	53	28	0	17	1.44
64009293--64009332	21	1.9	21	85	10	55	52	10	5	32	1.56
64009611--64009712	20	5.6	20	69	22	71	58	3	0	37	1.16
64009602--64009682	34	2.3	35	82	4	110	59	3	0	37	1.15
64009788--64009818	16	1.9	16	93	0	53	35	6	9	48	1.62
64020955--64020994	14	2.7	16	81	14	50	57	2	0	40	1.12
64023679--64023734	29	2.0	28	85	3	76	33	19	0	46	1.50
64024544--64024571	14	2.0	14	100	0	56	28	28	14	28	1.95
64027550--64027589	14	2.7	16	81	14	50	57	2	0	40	1.12
64030277--64030332	29	2.0	28	85	3	76	33	19	0	46	1.50
64031141--64031168	14	2.0	14	100	0	56	28	28	14	28	1.95
64034141--64034180	14	2.7	16	81	14	50	57	2	0	40	1.12
64036869--64036924	29	2.0	28	85	3	76	33	19	0	46	1.50
64037733--64037760	14	2.0	14	100	0	56	28	28	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64042036--64042139	48	2.2	48	94	0	181	29	22	34	13	1.92
64046523--64046593	29	2.4	30	84	9	92	32	9	7	50	1.62
64050780--64051591	209	3.9	208	81	7	935	29	13	22	34	1.92
64050786--64051698	209	4.5	205	81	7	862	30	13	22	33	1.92
64050641--64051698	197	5.3	195	79	8	993	29	13	22	34	1.93
64058366--64058492	62	2.0	62	100	0	254	37	9	18	33	1.84
64062094--64062118	7	3.6	7	100	0	50	24	0	12	64	1.27
64063178--64063241	30	2.1	30	83	11	78	57	7	7	26	1.54
64067706--64067753	20	2.3	20	85	3	60	41	2	0	56	1.11
64071331--64071362	10	3.3	10	91	8	57	56	6	0	37	1.25
64072290--64072330	18	2.3	19	83	8	50	31	2	2	63	1.20
64076261--64076347	31	2.8	31	82	1	95	34	11	13	40	1.81
64078038--64078085	21	2.3	21	82	7	62	27	2	2	68	1.11
64078077--64078126	24	2.0	25	88	3	75	48	0	6	46	1.27
64078106--64078153	17	2.5	20	77	16	57	39	0	4	56	1.19
64085494--64085598	31	3.5	31	75	10	92	44	4	10	40	1.60
64085521--64085594	30	2.4	29	84	10	78	43	5	13	37	1.67
64085536--64085594	30	1.9	31	89	3	93	44	6	13	35	1.71
64087293--64087386	29	3.1	29	67	15	82	52	11	14	21	1.74
64087236--64087395	61	2.7	60	90	1	248	48	13	16	21	1.81
64087212--64087404	61	3.2	60	79	5	235	46	15	15	23	1.83
64098877--64098954	39	2.0	38	82	9	95	30	6	8	53	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64098914--64098981	31	2.2	31	82	10	77	27	11	5	54	1.60
64104193--64104372	90	2.0	91	92	1	299	40	13	11	35	1.80
64104925--64104960	18	2.0	18	100	0	72	27	33	11	27	1.91
64107404--64108221	205	4.0	203	86	3	1039	32	23	16	28	1.96
64107404--64108221	410	2.0	411	86	3	1155	32	23	16	28	1.96
64116504--64116554	18	2.8	18	87	0	66	15	43	31	9	1.80
64130144--64130826	176	3.9	174	82	5	781	40	18	11	29	1.85
64129974--64130826	350	2.5	335	80	8	901	41	17	11	29	1.85
64131623--64131675	22	2.5	21	81	6	63	52	1	1	43	1.23
64131651--64131690	16	2.5	16	91	0	62	47	2	7	42	1.45
64131701--64131870	59	2.9	59	96	0	313	40	5	9	44	1.61
64141157--64141197	21	2.0	21	85	0	55	29	14	9	46	1.77
64149239--64149274	18	1.9	18	88	5	54	58	2	0	38	1.13
64151266--64151292	7	3.9	7	100	0	54	85	0	0	14	0.61
64163518--64163557	19	2.0	22	85	14	59	55	0	5	40	1.22
64163633--64163732	31	3.0	32	71	15	87	51	1	3	45	1.23
64181596--64181637	15	2.8	16	82	10	52	59	7	0	33	1.25
64188516--64188560	23	2.0	23	100	0	90	28	8	8	53	1.62
64190175--64190346	91	1.9	90	90	3	274	47	11	9	31	1.72
64197913--64197945	6	5.5	6	100	0	66	84	0	0	15	0.61
64199573--64199652	40	2.1	39	90	9	128	22	20	21	36	1.95
64199579--64199710	40	3.3	39	76	14	117	23	25	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64217923--64217951	8	3.8	8	90	9	51	89	0	0	10	0.48
64217923--64217951	15	1.9	15	100	0	58	89	0	0	10	0.48
64218342--64218389	19	2.4	21	79	10	55	58	2	0	39	1.10
64222062--64222122	21	3.1	21	69	26	69	45	18	13	22	1.83
64223491--64223970	236	2.0	235	87	3	687	44	22	11	21	1.84
64226380--64226419	20	2.0	20	85	5	53	22	2	32	42	1.67
64227289--64227321	17	1.9	17	93	0	57	45	9	9	36	1.68
64234637--64234907	135	2.0	135	96	0	497	39	12	16	30	1.87
64243347--64243394	23	2.1	22	84	3	60	27	4	2	66	1.21
64249633--64249669	15	2.5	15	95	0	65	40	24	16	18	1.90
64261753--64261793	22	1.9	21	85	5	55	36	4	4	53	1.44
64264295--64264361	22	3.0	22	76	8	64	41	19	22	16	1.90
64264341--64264423	25	3.3	25	86	0	112	39	20	20	19	1.92
64265437--64265485	23	2.1	23	96	0	89	44	8	4	42	1.53
64265858--64265914	15	3.5	15	69	17	51	49	0	1	49	1.11
64265953--64265983	16	2.0	16	93	6	55	38	0	0	61	0.96
64266640--64266689	26	1.9	26	100	0	100	36	12	12	40	1.79
64272940--64272982	23	1.9	22	81	13	52	39	0	0	60	0.97
64274303--64274337	10	3.6	10	84	7	54	31	0	0	68	0.90
64280948--64281039	35	2.7	34	72	12	89	63	1	1	34	1.09
64282490--64282528	20	1.9	21	89	5	62	38	0	0	61	0.96
64290178--64290367	105	1.8	105	84	2	265	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64304828--64304867	21	1.9	21	100	0	80	40	0	0	60	0.97
64304828--64304865	12	3.4	12	79	20	55	42	0	0	57	0.98
64307421--64307674	141	1.9	137	80	8	302	46	9	11	32	1.73
64313473--64313516	19	2.5	18	89	10	65	25	9	6	59	1.53
64314871--64314958	43	2.0	43	100	0	176	38	15	9	36	1.80
64324566--64324609	21	2.2	20	87	4	61	11	9	6	72	1.27
64324566--64324610	20	2.2	20	84	7	56	13	8	6	71	1.31
64324994--64325057	32	2.0	32	96	0	119	35	9	18	35	1.83
64330212--64330434	115	2.0	111	86	5	313	29	9	16	43	1.80
64331377--64332025	207	3.1	210	80	11	677	28	19	16	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221