genome.fa.s26.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  162  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48663749--48663785	8	4.5	8	86	6	56	75	2	13	8	1.13
48663754--48663788	17	2.1	17	100	0	70	77	5	11	5	1.12
48666314--48666400	31	2.8	31	89	0	129	48	14	17	19	1.81
48668358--48668402	15	3.0	15	84	9	56	15	55	8	20	1.66
48668374--48668401	5	5.6	5	100	0	56	17	60	0	21	1.36
48687767--48687963	98	2.0	98	94	0	349	37	24	9	28	1.87
48688623--48688675	25	2.2	24	90	6	81	58	3	7	30	1.43
48688749--48688792	2	22.0	2	85	0	61	50	2	2	45	1.27
48689449--48689561	19	5.8	19	85	4	163	34	15	10	38	1.83
48689449--48689560	40	2.8	40	93	2	183	34	15	10	39	1.82
48690121--48690160	15	2.7	15	80	0	53	55	5	22	17	1.61
48703082--48703152	19	3.6	20	88	7	101	36	12	12	38	1.82
48710205--48710233	15	1.9	15	100	0	58	89	0	10	0	0.48
48711826--48712499	88	7.7	88	87	1	834	27	21	25	25	1.99
48712437--48712736	44	6.8	44	82	3	352	30	13	24	32	1.93
48712440--48712688	133	1.9	133	88	1	374	32	12	24	30	1.93
48712437--48712767	177	1.9	177	89	1	511	31	12	25	30	1.93
48712435--48712743	133	2.3	134	82	4	367	30	13	24	32	1.93
48712651--48712880	118	1.9	119	86	3	329	31	14	26	26	1.95
48713228--48713305	21	3.7	21	73	17	72	35	7	16	39	1.78
48716535--48716564	15	2.0	15	93	0	51	76	6	0	16	0.99
48717030--48717137	55	2.0	55	92	0	180	44	12	3	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48722914--48722938	13	1.9	13	100	0	50	60	8	0	32	1.26
48722993--48723145	41	4.0	41	69	16	98	52	11	1	33	1.46
48722927--48723533	145	4.3	143	80	9	676	49	13	2	34	1.56
48722927--48723529	144	4.3	143	80	9	652	49	13	2	34	1.56
48723250--48723325	33	2.3	33	81	2	82	47	13	5	34	1.65
48723262--48723528	129	2.0	131	84	3	351	47	15	3	33	1.62
48726402--48726453	26	2.0	26	92	0	86	59	5	9	25	1.51
48727446--48727478	15	2.2	15	89	10	50	69	0	0	30	0.88
48742255--48742284	14	2.1	15	93	6	53	30	0	6	63	1.20
48747311--48747345	16	2.1	17	89	5	54	28	17	11	42	1.83
48761664--48761801	39	3.5	39	82	3	136	45	21	5	28	1.72
48764818--48764872	28	2.0	28	88	0	83	23	12	20	43	1.86
48774548--48774592	18	2.5	17	86	10	63	66	2	0	31	1.04
48774548--48774601	18	3.0	17	77	17	56	64	1	1	31	1.14
48777225--48777294	24	2.8	24	83	8	86	32	14	12	40	1.84
48777227--48777294	26	2.8	24	82	8	82	32	14	13	39	1.85
48777229--48777314	24	3.6	24	77	14	79	30	15	13	40	1.86
48779318--48779351	16	2.1	16	88	5	50	52	5	11	29	1.61
48784443--48784515	23	3.2	22	90	7	110	27	26	20	26	1.99
48790023--48790249	51	4.5	52	73	10	173	26	15	27	30	1.96
48790055--48790253	51	4.0	48	76	7	200	25	16	27	30	1.97
48790252--48790341	46	2.0	44	85	8	119	23	16	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48795095--48795122	10	2.8	10	100	0	56	78	0	10	10	0.96
48800915--48800948	17	1.9	18	88	5	52	35	17	8	38	1.81
48808545--48808623	41	2.0	40	82	2	95	27	21	7	43	1.80
48809480--48809517	20	1.9	20	88	0	58	36	10	0	52	1.36
48824107--48824173	27	2.5	26	95	2	89	32	26	11	28	1.92
48824107--48824201	28	3.4	28	89	2	129	32	27	12	27	1.93
48831960--48832057	28	3.5	28	90	2	135	31	28	13	26	1.94
48849978--48850043	26	2.5	26	80	7	71	37	16	21	24	1.93
48855055--48855188	67	2.0	69	83	2	173	49	6	3	40	1.47
48856316--48856362	17	2.6	18	76	13	51	44	27	4	23	1.72
48857295--48857319	13	1.9	13	100	0	50	8	0	24	68	1.16
48869799--48869888	27	3.3	27	84	6	103	40	15	11	33	1.83
48869823--48869888	27	2.4	27	92	0	105	39	16	10	33	1.83
48869867--48870034	81	2.1	81	82	4	196	29	23	8	38	1.84
48869894--48870077	54	3.4	54	88	1	235	28	22	8	40	1.83
48869894--48870076	81	2.3	81	85	3	244	28	22	8	40	1.83
48869894--48870078	27	6.8	28	81	6	204	28	22	8	40	1.82
48870002--48870252	27	9.2	27	74	9	125	37	20	7	34	1.82
48870056--48870279	54	4.1	54	71	8	184	38	20	8	32	1.82
48870065--48870258	27	7.1	27	72	10	126	39	18	8	34	1.80
48870299--48870376	27	2.9	27	77	11	88	35	21	20	21	1.96
48871003--48871044	14	3.1	14	83	12	52	40	14	26	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48871536--48871583	25	1.9	25	91	0	78	35	25	14	25	1.94
48871622--48871678	9	5.9	9	73	15	51	35	8	21	35	1.84
48871620--48871690	20	3.5	20	94	0	124	35	11	21	32	1.89
48871631--48871685	11	5.4	11	70	16	55	36	12	20	30	1.90
48871737--48871937	25	8.2	25	88	6	263	29	19	22	27	1.98
48873122--48873148	13	2.1	13	100	0	54	22	7	22	48	1.75
48874079--48874322	124	2.0	124	87	0	353	24	15	22	38	1.92
48875900--48875934	3	11.7	3	93	0	61	62	0	2	34	1.10
48882098--48882151	28	1.9	28	96	0	99	33	12	12	40	1.82
48887885--48887912	5	5.6	5	100	0	56	21	0	0	78	0.75
48892573--48892664	39	2.4	39	94	0	157	26	31	23	18	1.97
48894234--48894339	39	2.7	40	86	5	135	25	27	22	24	2.00
48898049--48898318	40	6.5	40	87	9	378	25	28	21	23	1.99
48898206--48898306	51	2.0	51	98	0	193	23	31	22	21	1.98
48900135--48900213	37	2.1	37	88	0	113	26	31	17	24	1.97
48900332--48900779	47	9.4	47	93	3	756	29	29	8	33	1.86
48900332--48900773	96	4.6	96	95	2	761	29	28	8	33	1.87
48900332--48900779	143	3.1	143	94	2	778	29	29	8	33	1.86
48901010--48901101	39	2.3	39	88	5	132	26	28	21	23	1.99
48901010--48901151	40	3.6	40	80	9	148	25	28	21	23	1.99
48913559--48913639	39	2.1	39	95	0	144	23	28	27	20	1.99
48913966--48914055	39	2.3	39	92	0	144	24	28	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48920765--48920823	10	5.9	10	76	13	59	27	3	1	67	1.16
48920766--48920811	20	2.3	20	92	0	74	28	0	2	69	1.00
48920765--48920826	30	2.0	31	85	14	85	27	3	1	67	1.15
48922142--48922386	51	4.9	51	82	3	264	31	24	17	25	1.97
48922135--48922387	101	2.5	100	81	4	276	31	25	18	24	1.97
48923933--48923985	17	3.3	17	80	17	60	33	5	0	60	1.20
48923966--48924088	12	9.9	12	67	25	53	34	4	0	60	1.21
48924008--48924082	2	39.5	2	70	15	52	38	1	1	58	1.15
48924008--48924088	29	3.0	28	74	23	75	37	1	1	60	1.13
48924030--48924075	23	2.0	24	91	4	76	34	0	2	63	1.07
48924037--48924120	31	2.6	33	81	9	84	35	2	3	58	1.28
48936146--48936773	78	8.1	78	89	1	945	32	18	24	25	1.97
48938346--48938382	11	3.5	11	78	14	51	29	0	2	67	1.04
48938347--48938392	20	2.3	20	88	0	65	30	2	2	65	1.16
48938296--48938403	56	1.9	55	81	5	128	27	3	4	63	1.31
48938466--48938518	17	3.3	17	80	17	60	33	5	0	60	1.20
48938499--48938619	12	9.9	12	67	28	53	33	4	0	61	1.20
48938542--48938604	23	2.7	23	83	13	76	38	1	1	58	1.17
48938545--48938614	31	2.3	31	85	5	88	37	1	1	60	1.15
48938545--48938614	23	3.0	22	80	17	72	37	1	1	60	1.15
48938568--48938651	31	2.6	33	81	9	84	35	2	3	58	1.28
48941095--48941169	23	3.3	23	79	7	82	26	25	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48941152--48941231	22	3.5	22	80	8	79	33	22	13	30	1.93
48941184--48941232	24	2.0	24	92	0	80	30	22	12	34	1.91
48955712--48955876	83	2.0	83	85	4	226	21	18	24	34	1.96
48955712--48955876	42	4.0	42	87	3	210	21	18	24	34	1.96
48955712--48955896	42	4.5	43	84	8	199	22	18	23	35	1.96
48987065--48987115	24	2.0	26	82	14	63	68	7	7	15	1.37
48998036--48998170	46	3.0	46	92	2	211	34	10	25	29	1.89
49005465--49005553	44	2.0	45	86	4	126	33	11	25	29	1.91
49005470--49005591	44	2.7	44	78	8	120	34	12	23	29	1.91
49006833--49006864	10	3.3	10	95	4	57	62	0	6	31	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221