genome.fa.s26.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  173  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51690470--51690513	20	2.2	20	95	0	79	65	6	18	9	1.42
51691261--51691285	13	1.9	13	100	0	50	24	0	4	72	1.02
51695364--51695406	22	2.0	22	86	9	61	32	4	9	53	1.53
51703254--51703788	184	2.9	184	88	0	739	28	8	19	43	1.80
51703362--51703649	91	3.1	91	67	9	251	28	9	19	43	1.81
51706652--51706711	26	2.3	26	79	0	75	36	23	23	16	1.94
51711791--51711815	8	3.1	8	100	0	50	24	0	0	76	0.80
51711798--51711855	22	2.6	23	78	15	75	20	5	1	72	1.13
51714609--51714663	27	2.0	27	100	0	110	40	0	18	41	1.50
51715360--51715391	15	2.1	16	94	5	57	78	9	0	12	0.97
51716156--51716269	45	2.5	45	82	2	131	39	15	22	21	1.92
51716289--51716355	35	1.9	35	81	6	82	50	8	17	22	1.74
51717825--51717891	28	2.4	28	87	0	89	44	4	14	35	1.66
51717854--51717961	13	8.2	12	75	19	83	44	0	17	37	1.55
51717852--51717906	28	2.0	28	85	7	76	49	1	14	34	1.54
51717851--51717966	40	2.9	41	88	3	155	46	0	17	35	1.54
51718764--51718808	20	2.2	20	92	0	72	26	0	26	46	1.53
51719746--51719775	12	2.5	12	94	0	51	73	16	10	0	1.09
51726086--51726127	21	2.0	21	85	0	57	21	35	19	23	1.96
51727188--51727308	41	3.0	41	80	0	143	29	25	23	20	1.99
51727187--51727327	41	3.5	41	75	12	130	30	26	22	20	1.98
51727186--51727340	82	1.9	82	81	5	188	30	25	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51732044--51732104	23	2.7	23	85	10	72	37	22	18	21	1.94
51733435--51733489	25	2.2	25	81	12	60	49	5	3	41	1.43
51733429--51733536	37	2.9	37	77	18	111	51	3	3	40	1.37
51740949--51741000	25	2.1	24	89	3	77	17	23	21	38	1.93
51741330--51741387	17	3.5	17	69	23	52	43	3	17	36	1.66
51755439--51755464	5	5.2	5	100	0	52	19	0	0	80	0.71
51756171--51756503	44	7.6	45	74	10	196	26	21	20	30	1.98
51756170--51756376	89	2.3	89	81	6	233	26	23	19	30	1.98
51756170--51756377	45	4.7	44	79	4	186	25	23	19	30	1.98
51756545--51756648	50	2.1	50	80	3	111	25	25	23	25	2.00
51756662--51756778	44	2.7	43	80	6	121	30	19	18	30	1.96
51756746--51756863	44	2.6	45	85	6	152	22	27	23	26	2.00
51756871--51757444	88	6.5	88	87	0	779	20	24	25	29	1.99
51757163--51757305	44	3.2	44	71	3	135	25	25	24	24	2.00
51794599--51794646	20	2.5	18	76	10	51	45	2	2	50	1.25
51795205--51795248	18	2.4	19	84	3	54	65	11	0	22	1.24
51799886--51799926	12	3.8	11	84	15	50	51	12	26	9	1.70
51802353--51802452	40	2.5	40	90	0	155	44	30	16	10	1.80
51805867--51806021	49	3.3	46	67	24	119	47	13	9	30	1.74
51805894--51806035	46	3.1	46	64	25	111	47	13	8	30	1.72
51805817--51806095	90	3.1	89	90	2	423	46	13	8	31	1.74
51809960--51810124	87	1.9	86	86	3	233	25	16	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51811861--51811922	27	2.3	27	82	0	79	27	22	12	37	1.91
51813192--51813229	18	2.1	18	85	9	51	36	2	0	60	1.11
51821197--51821422	113	2.0	113	96	0	416	31	10	12	45	1.76
51822631--51822686	21	2.7	21	82	0	76	30	32	8	28	1.88
51836532--51836576	23	2.0	23	95	0	81	35	6	2	55	1.38
51836630--51836710	27	3.0	28	89	5	114	30	20	28	19	1.97
51836775--51836853	19	4.2	19	74	11	63	36	10	0	53	1.35
51836783--51836844	18	3.4	18	72	12	63	32	11	0	56	1.35
51836784--51836853	19	3.7	19	78	3	79	37	10	0	52	1.35
51836789--51836859	37	1.9	37	91	0	115	40	9	0	49	1.36
51836952--51836983	15	2.1	15	100	0	64	37	12	6	43	1.68
51837131--51837201	37	1.9	37	97	0	133	49	0	9	40	1.36
51837137--51837205	19	3.7	19	82	5	97	52	0	10	37	1.36
51837430--51837498	19	3.7	19	80	5	88	53	0	8	37	1.32
51837424--51837494	37	1.9	37	97	0	133	50	0	9	39	1.36
51837424--51837482	18	3.2	18	80	4	73	50	0	10	38	1.36
51837432--51837511	37	2.2	37	81	4	90	57	0	8	33	1.30
51837598--51837673	27	2.8	27	88	4	100	19	26	22	31	1.98
51837840--51837873	18	2.0	17	88	11	52	41	0	2	55	1.15
51837849--51838037	59	3.2	58	72	14	195	41	1	4	52	1.30
51837822--51838059	120	2.0	119	97	0	449	42	2	5	50	1.36
51837959--51838075	18	7.0	17	66	26	54	39	0	3	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51838309--51838346	16	2.4	16	90	0	58	31	28	2	36	1.71
51838390--51838440	24	2.0	26	85	14	72	54	0	13	31	1.39
51844204--51844233	3	10.0	3	100	0	60	33	0	0	66	0.92
51849202--51849254	21	2.5	21	81	0	70	39	37	1	20	1.64
51852142--51852175	14	2.4	14	90	9	52	67	5	17	8	1.37
51854337--51855190	45	19.0	45	86	1	1142	30	17	24	28	1.97
51855145--51855364	89	2.5	89	81	2	255	28	23	23	24	1.99
51854856--51855410	90	6.2	87	79	7	261	29	20	24	25	1.99
51855731--51855933	44	4.6	45	73	3	160	32	20	20	27	1.97
51856762--51856795	14	2.4	14	90	9	52	67	5	17	8	1.37
51858945--51858999	11	5.0	11	76	20	53	40	0	0	60	0.97
51858945--51858982	20	2.0	20	94	5	69	39	0	0	60	0.97
51858975--51859015	15	2.9	14	86	10	57	43	0	0	56	0.99
51858939--51859011	29	2.4	31	76	19	82	41	1	0	57	1.07
51858990--51859015	13	2.0	13	100	0	52	46	0	0	53	1.00
51859322--51859385	31	2.1	30	85	2	83	32	18	1	46	1.59
51862794--51862927	54	2.5	54	93	2	225	26	20	35	17	1.95
51875915--51875939	3	8.3	3	100	0	50	0	32	0	68	0.90
51878829--51878877	24	2.0	24	84	0	62	12	6	14	67	1.40
51888306--51888350	20	2.2	20	88	0	63	26	13	15	44	1.83
51904357--51904411	21	2.6	21	91	0	92	21	9	40	29	1.84
51908404--51908446	8	4.9	9	88	11	63	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51910588--51910683	41	2.3	41	92	0	156	27	20	29	22	1.99
51918271--51918387	41	2.9	41	89	0	180	28	19	28	23	1.99
51923296--51923329	15	2.3	15	94	0	59	23	0	2	73	0.97
51923341--51923386	23	2.0	23	83	8	58	41	10	15	32	1.82
51926061--51926116	22	2.5	21	80	8	58	28	1	3	66	1.19
51927167--51927206	17	2.5	15	84	11	53	62	5	0	32	1.17
51929233--51929257	13	1.9	13	100	0	50	36	24	8	32	1.84
51932742--51932768	12	2.2	12	100	0	54	44	0	7	48	1.31
51933464--51933660	10	20.9	9	67	18	55	34	2	4	59	1.29
51933502--51933552	18	2.7	18	76	11	50	25	0	5	68	1.12
51939933--51940030	23	4.3	23	93	2	171	20	22	26	30	1.98
51939935--51940023	45	2.0	45	97	0	169	19	23	26	30	1.98
51947303--51947400	23	4.3	23	93	2	171	20	22	26	30	1.98
51947305--51947393	45	2.0	45	97	0	169	19	23	26	30	1.98
51954068--51954122	23	2.4	23	78	3	67	47	0	12	40	1.42
51954135--51954200	32	2.0	33	82	2	80	59	7	1	31	1.35
51954344--51954373	3	9.7	3	92	7	51	33	0	0	66	0.92
51955029--51955082	19	2.8	19	77	0	54	72	1	1	24	1.05
51955301--51955401	29	3.5	28	76	7	96	30	4	1	62	1.27
51955328--51955450	8	15.0	8	68	22	53	31	2	2	63	1.20
51955330--51955429	10	10.1	10	71	19	59	29	2	3	66	1.18
51955360--51955460	9	10.7	9	73	14	62	30	0	2	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51955450--51955488	6	6.5	6	100	0	78	15	0	0	84	0.62
51955457--51955499	18	2.4	18	84	7	52	16	2	0	81	0.79
51956760--51956823	25	2.7	23	84	15	87	45	0	0	54	0.99
51956843--51956892	10	5.2	10	80	7	50	72	0	4	24	1.02
51956849--51956891	19	2.3	18	84	11	52	72	0	4	23	1.04
51956843--51956893	20	2.6	19	81	3	66	72	0	3	23	1.01
51963279--51963366	44	2.0	46	84	8	119	32	6	23	36	1.82
51963447--51963574	57	2.2	59	86	8	172	53	1	0	44	1.15
51966734--51966760	14	1.9	14	100	0	54	40	0	14	44	1.46
51967849--51967965	23	5.1	23	79	9	132	44	11	13	29	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221