genome.fa.s26.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  186  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55051984--55052045	28	2.3	27	83	13	74	20	3	8	67	1.31
55053522--55053569	25	1.9	25	95	0	87	45	29	8	16	1.76
55055787--55055824	19	2.0	20	89	5	60	55	5	2	36	1.37
55056007--55056045	15	2.7	14	78	21	53	64	0	0	35	0.94
55056025--55056066	21	1.9	22	85	9	59	64	2	0	33	1.07
55056615--55056655	5	8.6	5	84	10	50	80	2	2	14	0.92
55056615--55056655	9	4.3	10	78	9	50	80	2	2	14	0.92
55059853--55059979	55	2.3	55	80	2	148	25	22	28	22	1.99
55066544--55066667	55	2.3	55	88	0	176	20	18	33	28	1.96
55066735--55066823	43	2.1	43	86	0	124	21	29	28	21	1.98
55070705--55070752	12	3.9	12	76	15	53	4	20	0	75	0.97
55071450--55071491	21	2.0	21	90	0	66	38	7	23	30	1.82
55077701--55077739	18	2.2	18	85	0	51	25	5	5	64	1.35
55079069--55079121	27	2.0	26	85	10	72	32	28	20	18	1.97
55079003--55079196	102	1.9	98	86	8	275	34	27	17	20	1.95
55082035--55082086	20	2.5	20	87	6	68	36	1	17	44	1.60
55087423--55088040	75	8.2	74	84	4	722	27	16	19	35	1.94
55087423--55088040	151	4.1	150	84	3	785	27	16	19	35	1.94
55088349--55088517	30	5.8	30	72	12	122	30	22	4	43	1.72
55089172--55089237	4	18.0	4	75	17	63	74	0	25	0	0.82
55089172--55089237	7	9.0	8	73	17	63	74	0	25	0	0.82
55089172--55089242	25	2.8	24	91	8	115	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55089165--55089242	11	7.4	10	74	14	50	73	0	25	1	0.91
55089192--55089236	15	3.3	15	74	25	55	75	0	24	0	0.80
55093109--55093332	45	4.9	43	71	11	133	25	25	17	30	1.97
55093101--55093347	88	2.7	90	78	7	275	24	27	17	30	1.97
55115606--55115775	88	2.0	86	86	6	236	38	17	9	34	1.82
55115829--55115889	26	2.4	26	83	2	79	54	0	3	42	1.17
55115818--55115859	18	2.3	19	79	4	50	59	0	2	38	1.10
55115854--55115936	18	4.5	18	72	11	62	54	0	7	38	1.28
55115927--55115967	20	2.0	20	90	9	66	60	9	2	26	1.40
55116165--55116279	47	2.4	47	80	11	126	30	5	2	61	1.31
55116203--55116305	27	3.7	26	76	12	89	30	1	1	66	1.14
55116240--55116287	19	2.7	19	87	9	66	27	0	4	68	1.07
55116203--55116299	47	2.1	46	88	5	142	29	2	2	65	1.15
55116212--55116279	29	2.4	28	83	9	84	27	1	2	67	1.13
55117359--55117410	26	2.0	26	100	0	104	30	11	19	38	1.87
55117764--55117797	17	2.0	17	100	0	68	41	11	0	47	1.40
55121936--55121981	3	15.3	3	100	0	92	65	0	0	34	0.93
55122080--55122151	30	2.4	29	77	9	81	38	2	9	48	1.51
55138506--55138582	39	1.9	41	89	5	122	22	20	27	29	1.98
55146058--55146159	24	4.2	24	77	7	107	35	22	25	16	1.95
55146059--55146153	49	1.9	49	82	4	120	33	23	27	15	1.95
55164723--55164777	10	5.6	10	84	4	67	58	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55164704--55164777	29	2.6	28	89	4	105	58	1	1	39	1.15
55164705--55164794	29	3.2	29	85	6	96	58	2	3	35	1.27
55164716--55164800	39	2.2	39	81	6	93	61	3	2	32	1.26
55165058--55165089	11	3.1	11	82	17	50	21	9	0	68	1.17
55165108--55165166	19	3.2	18	79	9	66	44	1	0	54	1.10
55165096--55165154	26	2.3	26	85	5	75	44	1	0	54	1.10
55166553--55166612	29	2.0	32	83	9	81	18	26	6	48	1.72
55167422--55167464	20	2.2	20	80	8	54	60	0	2	37	1.10
55168412--55168533	58	2.1	58	93	1	210	54	11	6	27	1.61
55169005--55169059	27	2.0	27	100	0	110	49	14	7	29	1.70
55170781--55171098	41	7.8	40	72	11	193	16	23	22	37	1.94
55170780--55171059	83	3.4	82	80	5	275	16	23	22	37	1.93
55171611--55171648	15	2.5	15	86	0	58	18	0	44	36	1.50
55171584--55171651	15	4.9	14	74	13	52	22	0	36	41	1.54
55173376--55173413	10	3.8	10	83	13	51	47	0	10	42	1.38
55175946--55176024	16	5.0	16	76	13	65	46	16	2	34	1.60
55175983--55176023	13	2.8	15	85	14	59	46	19	0	34	1.50
55176101--55176154	22	2.3	22	87	9	72	48	11	0	40	1.39
55176111--55176161	22	2.4	22	90	3	86	49	9	0	41	1.36
55176086--55176251	56	3.0	56	99	0	323	47	10	0	40	1.43
55176138--55176287	34	4.8	34	74	22	132	47	10	1	40	1.47
55176157--55176210	22	2.3	22	87	9	72	48	11	0	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55176126--55176287	90	1.8	87	90	5	263	46	11	1	40	1.48
55176167--55176217	22	2.4	22	90	3	86	49	9	0	41	1.36
55176092--55176365	9	30.7	9	67	22	73	46	12	1	39	1.52
55176303--55176428	25	5.2	25	70	9	82	46	16	2	34	1.60
55176317--55176436	16	7.9	16	64	19	69	45	17	2	35	1.62
55181394--55181439	21	2.2	21	92	0	74	36	19	39	4	1.72
55181443--55181500	21	2.8	21	89	0	89	36	15	44	3	1.63
55181797--55182151	43	8.2	43	73	6	252	23	18	29	28	1.98
55181801--55182068	86	3.1	86	82	5	326	21	16	30	31	1.95
55182300--55182342	22	2.0	22	90	0	68	44	27	18	9	1.80
55186986--55187021	15	2.5	14	86	8	54	44	8	0	47	1.33
55187340--55187389	3	16.7	3	100	0	100	34	32	0	34	1.58
55192674--55192703	10	3.1	10	95	4	53	90	0	10	0	0.47
55192674--55192699	9	2.9	9	100	0	52	92	0	7	0	0.39
55195730--55196080	44	7.9	44	73	9	174	30	17	21	29	1.96
55197659--55197741	40	2.0	42	86	9	118	31	1	4	62	1.23
55200709--55201148	238	1.8	238	97	0	837	45	8	11	34	1.71
55202780--55202838	29	2.0	29	96	0	109	54	0	8	37	1.31
55202843--55202880	9	4.2	9	89	0	58	31	10	10	47	1.72
55205170--55205212	3	14.3	3	85	9	61	67	0	0	32	0.91
55205170--55205226	12	4.8	12	77	14	55	68	1	0	29	1.00
55205172--55205228	15	3.9	15	81	9	64	68	1	0	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55205429--55205467	19	2.0	21	85	10	55	69	5	10	15	1.34
55205667--55205721	19	2.7	21	83	11	87	36	10	10	41	1.75
55205644--55205709	23	3.0	22	75	20	66	37	15	7	39	1.75
55212253--55212293	21	2.0	21	85	9	57	39	21	4	34	1.75
55212306--55212330	7	3.6	7	100	0	50	24	0	28	48	1.52
55216540--55216657	43	2.8	43	83	6	134	33	30	14	22	1.93
55220430--55220763	121	2.7	118	79	13	311	34	13	14	37	1.85
55220761--55220807	14	3.3	14	83	13	60	36	40	0	23	1.55
55221064--55221094	15	2.1	15	93	0	53	32	41	0	25	1.56
55221106--55221132	14	1.9	14	100	0	54	37	37	0	25	1.57
55221106--55221139	14	2.4	14	90	0	50	38	35	0	26	1.57
55221307--55221460	72	2.1	73	87	1	220	26	24	20	27	1.99
55221360--55221574	114	1.9	114	91	0	349	26	26	20	25	1.99
55221474--55221647	73	2.4	73	91	0	267	25	27	18	27	1.98
55221307--55221761	187	2.4	187	91	1	716	26	26	19	27	1.99
55221549--55221847	114	2.6	114	94	0	517	26	26	19	27	1.99
55221751--55221945	98	2.0	98	91	0	318	26	26	18	28	1.98
55221873--55222027	73	2.1	72	86	1	211	25	25	21	27	1.99
55222113--55222138	12	2.2	12	100	0	52	46	30	15	7	1.74
55222498--55222527	15	1.9	16	93	6	53	46	6	3	43	1.46
55224140--55224208	21	3.4	21	67	23	58	37	10	17	34	1.83
55224123--55224203	40	2.0	40	100	0	162	38	9	17	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55227187--55227218	15	2.1	15	100	0	64	68	0	12	18	1.20
55232839--55232868	16	1.9	16	93	6	53	30	0	20	50	1.49
55252883--55252931	25	1.9	26	88	12	75	32	0	20	46	1.51
55252884--55252938	25	2.2	25	80	9	58	34	3	20	41	1.69
55253793--55253828	18	2.0	18	100	0	72	22	11	27	38	1.88
55261912--55261982	35	2.0	35	100	0	142	11	11	14	63	1.53
55267171--55267215	20	2.2	20	96	0	81	48	13	2	35	1.54
55267730--55267758	3	9.7	3	100	0	58	68	0	0	31	0.89
55267982--55268132	73	2.0	75	82	3	180	56	2	10	29	1.46
55268035--55268201	73	2.3	71	80	7	167	55	1	13	29	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221