genome.fa.s26.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  147  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45001645--45002050	140	2.9	140	93	0	686	31	17	21	29	1.96
45011646--45011685	20	2.0	20	90	0	62	50	12	10	27	1.72
45011634--45011700	34	1.9	35	87	3	100	46	11	8	32	1.72
45012581--45012665	20	4.4	19	78	11	75	38	28	10	22	1.87
45028520--45028552	17	1.9	17	88	11	50	27	0	3	69	1.03
45028529--45028591	30	2.1	30	90	0	99	26	3	12	57	1.51
45028715--45028748	11	3.0	12	87	12	54	67	0	0	32	0.91
45029827--45029969	66	2.1	67	90	1	234	36	13	9	39	1.78
45029722--45029916	104	1.9	105	89	1	302	33	10	12	43	1.77
45032127--45032239	27	4.2	27	82	0	118	30	17	23	29	1.97
45032109--45032238	54	2.4	54	80	0	134	29	17	23	29	1.97
45035997--45036062	23	2.9	23	93	0	114	46	36	7	9	1.64
45036174--45036216	17	2.5	17	82	14	61	34	23	0	41	1.55
45036995--45037025	16	1.9	16	93	0	53	0	19	6	74	1.03
45038007--45038049	21	2.0	21	90	0	68	25	16	18	39	1.91
45044031--45044198	87	1.9	90	82	12	215	29	27	17	25	1.98
45043994--45044209	45	4.9	43	78	14	201	29	28	17	25	1.97
45047055--45047159	43	2.4	43	87	1	156	31	23	17	27	1.97
45047289--45047483	31	6.3	31	83	3	232	43	14	9	32	1.78
45047277--45047483	61	3.4	62	86	4	271	43	15	8	32	1.77
45049557--45049729	85	2.0	84	83	1	211	27	13	26	32	1.94
45049561--45049684	42	3.0	40	87	8	167	25	15	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45049564--45049730	43	4.0	42	82	3	174	28	14	26	31	1.95
45051165--45051205	16	2.6	16	88	7	57	29	14	0	56	1.39
45054684--45054722	18	2.1	19	85	4	53	30	23	0	46	1.53
45054841--45054905	23	2.8	23	92	0	112	47	32	9	10	1.70
45055852--45055907	3	18.7	3	81	7	51	55	0	0	44	0.99
45055852--45055907	24	2.3	25	90	6	80	55	0	0	44	0.99
45055852--45055908	21	2.7	22	86	5	82	54	0	0	45	0.99
45056279--45056307	15	1.9	15	100	0	58	55	13	0	31	1.39
45059668--45059713	18	2.6	18	86	6	58	13	13	4	69	1.33
45059715--45059769	18	3.2	17	74	23	53	49	3	0	47	1.19
45062035--45062074	20	2.0	20	90	0	62	50	12	10	27	1.72
45062023--45062089	34	1.9	35	90	3	109	46	13	8	31	1.74
45065774--45065855	41	2.0	41	97	0	155	42	17	15	24	1.88
45069787--45069865	33	2.3	33	82	10	88	49	0	2	48	1.14
45069954--45069998	22	2.0	22	83	8	56	42	0	0	57	0.98
45069974--45070028	8	7.4	8	87	8	64	41	0	0	58	0.98
45069956--45070047	28	3.3	28	82	7	107	41	0	0	58	0.98
45069974--45070046	36	2.0	36	94	5	130	39	0	0	60	0.97
45073721--45073755	16	2.2	16	100	0	70	45	0	31	22	1.53
45074186--45074216	9	3.4	9	90	0	53	38	22	12	25	1.90
45079541--45079704	51	3.2	51	97	0	301	32	14	24	29	1.94
45082315--45082341	12	2.2	12	100	0	54	37	14	0	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45086182--45086235	25	2.2	25	86	6	74	22	14	5	57	1.58
45086951--45086976	8	3.2	8	100	0	52	88	0	0	11	0.52
45087930--45087988	7	8.0	7	78	21	59	72	0	11	15	1.11
45087938--45087988	14	3.5	14	82	10	66	74	0	11	13	1.07
45088198--45088235	14	2.8	14	96	4	69	36	13	21	28	1.91
45089660--45089844	44	4.2	43	68	11	133	29	18	24	27	1.98
45089556--45089765	44	4.8	44	68	13	126	32	18	22	26	1.97
45089850--45090023	44	4.0	43	66	12	97	29	17	22	30	1.96
45089369--45090416	517	2.0	521	86	3	1475	29	17	24	29	1.97
45089369--45090416	132	8.0	131	89	3	1427	29	17	24	29	1.97
45091343--45091377	16	2.3	15	90	5	52	0	14	5	80	0.89
45092324--45092487	51	3.2	51	93	0	283	34	13	22	29	1.92
45095262--45095319	25	2.4	24	77	11	66	34	3	6	55	1.44
45100561--45100614	21	2.6	21	91	5	83	29	35	9	25	1.87
45104430--45104568	42	3.2	42	77	7	120	30	25	17	26	1.97
45111040--45111157	33	3.6	33	78	11	134	40	14	8	36	1.76
45114219--45114300	26	3.0	27	75	12	87	43	1	2	52	1.22
45114354--45114388	18	2.0	17	88	5	52	45	0	0	54	0.99
45114301--45114645	120	2.9	120	99	0	674	44	1	6	47	1.38
45114474--45114508	18	2.0	17	88	5	52	45	0	0	54	0.99
45114594--45114628	18	2.0	17	88	5	52	45	0	0	54	0.99
45114864--45114899	16	2.2	16	100	0	72	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45115362--45115403	20	2.2	20	87	8	61	38	0	9	52	1.34
45116272--45116328	27	2.1	27	83	9	71	49	3	1	45	1.29
45119636--45119683	21	2.3	20	82	10	60	27	2	33	37	1.69
45119745--45119795	21	2.4	21	100	0	102	17	0	49	33	1.47
45121632--45121678	22	2.1	22	96	0	85	38	4	12	44	1.62
45122788--45122825	19	2.0	19	94	0	67	47	7	0	44	1.32
45122892--45122942	25	2.0	25	96	0	93	45	15	1	37	1.58
45123011--45123054	19	2.3	19	96	0	79	47	11	0	40	1.39
45123090--45123123	17	1.9	18	88	5	52	38	5	0	55	1.24
45123120--45123170	25	2.0	25	96	0	93	45	15	1	37	1.58
45122788--45123293	228	2.2	229	96	0	935	44	12	1	41	1.53
45123277--45123894	9	68.2	9	75	14	522	45	17	0	35	1.56
45123523--45123587	23	3.0	23	85	12	86	52	16	0	30	1.45
45129438--45129477	12	3.3	12	82	0	53	42	15	37	5	1.68
45129884--45129976	42	2.2	43	86	1	125	26	18	23	31	1.97
45129921--45130147	42	5.4	42	82	3	251	24	20	20	34	1.96
45130998--45131039	17	2.6	16	79	17	50	45	9	9	35	1.69
45133058--45133215	83	1.9	83	89	0	244	36	5	15	43	1.68
45139991--45140273	50	5.7	50	85	1	327	29	21	27	21	1.99
45142883--45143006	12	9.7	13	69	19	57	48	9	17	24	1.77
45142883--45142993	25	4.4	25	71	13	93	48	9	17	25	1.76
45142892--45143006	13	8.9	14	70	18	54	49	10	16	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45143043--45143093	25	2.0	25	100	0	102	43	7	7	41	1.63
45143453--45143496	14	3.1	14	80	6	52	20	11	11	56	1.64
45143465--45143515	15	3.4	15	73	10	50	25	9	7	56	1.58
45143458--45143523	14	4.6	14	75	7	60	25	9	10	54	1.64
45143544--45143579	13	2.8	13	91	4	56	25	25	5	44	1.75
45143545--45143590	24	1.9	24	82	8	58	26	21	4	47	1.69
45147514--45147599	6	14.3	6	77	9	77	73	0	1	25	0.91
45147517--45147599	25	3.5	24	77	12	89	72	0	1	26	0.92
45147517--45147606	23	3.8	22	79	13	90	71	0	1	27	0.94
45147514--45147611	29	3.3	29	77	11	103	72	0	1	26	0.91
45147514--45147612	12	7.8	12	70	18	58	71	0	1	27	0.92
45154447--45154485	11	3.4	11	86	13	60	51	7	17	23	1.71
45154441--45154562	12	9.9	12	71	15	79	50	8	15	26	1.72
45157758--45157893	17	7.4	18	68	17	73	43	8	11	36	1.73
45157812--45157870	17	3.4	17	83	4	82	40	8	15	35	1.77
45157744--45157891	38	4.1	37	78	10	144	43	9	12	35	1.74
45157744--45157891	73	2.0	73	81	5	174	43	9	12	35	1.74
45158585--45158625	7	6.0	7	83	11	50	12	2	0	85	0.70
45158577--45158623	20	2.3	21	85	3	60	14	4	0	80	0.85
45158599--45158630	15	2.1	15	100	0	64	6	6	0	87	0.67
45158629--45158672	3	14.0	3	90	4	61	0	29	0	70	0.88
45159019--45159182	58	2.8	56	79	8	161	43	4	20	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45159019--45159181	29	5.6	29	76	5	143	44	4	20	30	1.72
45159343--45161879	231	11.1	226	85	6	2602	36	19	16	27	1.94
45159343--45161281	152	12.6	149	82	7	1913	35	19	16	27	1.94
45161300--45161879	79	7.6	77	82	7	646	36	19	16	26	1.93
45162735--45162784	17	2.9	16	88	11	73	0	2	8	90	0.54
45162736--45162786	25	2.1	24	89	7	77	0	1	7	90	0.53
45162744--45162792	25	2.0	25	88	8	73	4	0	8	87	0.65
45162734--45162786	1	53.0	1	80	0	61	0	1	7	90	0.52
45162734--45162785	18	2.9	17	88	5	77	0	1	7	90	0.53
45168864--45168992	17	7.1	18	74	13	122	43	10	11	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221