genome.fa.s26.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  189  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55700251--55700353	22	4.6	22	72	7	82	22	1	42	33	1.65
55700259--55700331	15	4.9	15	80	6	85	23	2	42	31	1.68
55700259--55700315	29	2.0	29	89	0	87	22	1	42	33	1.64
55703592--55703618	2	13.5	2	100	0	54	0	0	48	51	1.00
55704022--55704081	33	1.9	30	80	12	68	33	8	15	43	1.76
55704163--55704195	10	3.1	11	86	8	50	33	9	21	36	1.85
55704228--55704319	13	6.9	13	74	18	91	45	9	1	43	1.44
55704211--55704465	40	6.5	39	79	11	215	45	10	1	42	1.46
55704225--55704328	13	7.8	13	73	16	79	44	11	1	42	1.51
55704360--55704449	17	4.9	17	75	12	72	46	11	0	42	1.39
55704342--55704427	30	2.8	32	78	15	92	44	12	0	43	1.42
55704512--55704572	32	1.9	32	83	12	81	44	0	4	50	1.23
55704475--55704794	121	2.6	121	94	1	543	40	7	6	45	1.57
55704841--55705039	9	23.2	9	69	16	120	46	20	2	30	1.64
55704847--55704985	25	5.8	23	77	12	122	48	19	1	30	1.57
55704867--55705040	59	3.0	57	82	6	215	46	20	2	30	1.63
55705008--55705040	16	2.1	16	94	0	57	48	21	0	30	1.50
55707208--55707333	66	1.9	66	84	9	168	40	16	24	18	1.90
55707339--55707431	21	4.4	21	86	0	123	32	12	45	9	1.75
55707737--55707857	43	2.8	41	80	9	125	19	15	33	30	1.93
55708066--55708109	22	2.0	22	90	0	70	43	25	20	11	1.85
55710023--55710064	21	2.0	21	81	9	50	0	33	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55718266--55718330	28	2.3	29	75	17	73	52	9	1	36	1.43
55722319--55722343	2	12.5	2	100	0	50	48	0	0	52	1.00
55733962--55734017	29	2.0	30	82	10	73	55	7	5	32	1.50
55734080--55734131	18	2.8	18	77	14	52	59	0	1	38	1.08
55734117--55734155	18	2.2	18	95	0	69	53	2	0	43	1.14
55738974--55739027	22	2.5	23	77	19	62	64	1	7	25	1.30
55743641--55743768	53	2.4	53	85	3	159	39	14	25	20	1.90
55743641--55743778	27	5.1	27	71	5	100	40	13	25	20	1.89
55743775--55743836	27	2.3	27	80	0	70	37	11	25	25	1.89
55743856--55743917	27	2.3	27	83	5	72	35	11	29	24	1.90
55743875--55743941	27	2.5	27	87	0	89	38	10	28	22	1.87
55759327--55759378	19	2.5	21	81	12	63	59	3	1	34	1.27
55780916--55780949	6	5.7	6	89	0	50	32	20	8	38	1.84
55785822--55785867	22	2.1	22	84	4	58	21	21	26	30	1.99
55789598--55789633	9	4.0	9	92	0	63	30	22	0	47	1.52
55793660--55793737	38	2.1	38	95	0	138	33	8	8	48	1.66
55793676--55793756	38	2.1	38	83	0	99	34	8	12	44	1.73
55800162--55800186	5	5.0	5	100	0	50	60	0	0	40	0.97
55809138--55809188	26	2.0	26	96	0	93	50	11	9	27	1.70
55813720--55813752	15	2.2	15	89	10	50	30	0	9	60	1.27
55825159--55825301	57	2.4	57	88	9	198	29	20	27	23	1.99
55826732--55826793	30	2.0	31	87	3	90	20	46	0	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55829477--55829773	50	5.8	50	82	3	301	23	27	21	27	1.99
55844392--55844427	5	7.2	5	93	0	63	38	0	22	38	1.54
55854518--55854577	21	2.9	21	75	7	52	56	1	0	41	1.09
55854626--55854660	13	2.8	12	83	8	52	40	0	0	60	0.97
55854621--55854663	19	2.3	19	84	4	61	44	0	0	55	0.99
55854814--55854880	8	7.6	9	76	21	54	53	0	2	43	1.16
55854814--55854884	26	2.6	28	76	17	78	54	0	2	42	1.14
55854785--55854951	75	2.2	76	80	5	187	59	2	1	36	1.21
55854786--55854880	9	11.2	9	74	22	57	58	0	3	37	1.14
55855558--55855718	45	3.6	45	95	2	281	28	22	15	32	1.95
55858055--55858090	18	2.1	17	89	5	54	44	11	16	27	1.82
55858354--55858393	9	4.4	9	81	12	55	32	2	0	65	1.06
55865469--55865529	31	2.0	31	96	0	113	31	22	11	34	1.90
55869400--55869597	109	1.8	109	90	2	317	30	21	11	36	1.89
55871795--55871892	25	4.0	24	80	11	108	22	23	22	31	1.98
55871795--55871892	50	2.0	50	84	8	128	22	23	22	31	1.98
55876012--55876075	19	3.2	20	72	16	69	9	32	7	50	1.64
55876672--55876836	13	12.7	13	81	6	111	35	5	7	51	1.53
55876681--55876808	40	3.2	40	89	5	181	34	4	6	54	1.46
55876681--55876833	53	2.9	53	86	5	211	34	4	7	53	1.49
55876681--55876835	26	5.9	26	82	6	179	34	5	7	53	1.50
55876686--55876883	53	3.8	53	83	4	188	35	6	7	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55876852--55876920	34	2.0	34	94	0	120	39	5	8	46	1.59
55889845--55889897	21	2.4	21	78	9	52	49	0	1	49	1.12
55889853--55889893	20	2.0	21	85	4	57	46	0	0	53	1.00
55891155--55891210	29	2.0	29	82	10	71	42	3	17	35	1.67
55891942--55892005	24	2.7	24	85	9	87	14	31	21	32	1.93
55892476--55892524	16	3.1	16	90	0	80	34	4	36	24	1.75
55892504--55892612	45	2.6	43	80	12	129	33	4	29	32	1.78
55892772--55893079	61	5.1	61	70	14	280	50	6	1	41	1.37
55892875--55892916	16	2.6	17	81	7	52	59	0	0	40	0.97
55892740--55893156	60	7.0	58	68	16	244	51	5	2	41	1.37
55892997--55893044	18	2.8	18	74	22	50	56	0	0	43	0.99
55892976--55893027	15	3.6	15	80	12	56	53	1	0	44	1.11
55892740--55893152	120	3.4	120	96	0	729	50	5	2	41	1.37
55893093--55893376	91	3.0	93	86	6	317	47	3	3	45	1.37
55893193--55893253	28	2.2	28	85	5	81	50	3	0	45	1.17
55893200--55893343	47	3.1	46	65	23	113	49	4	2	44	1.33
55893168--55893380	91	2.3	91	95	0	372	46	4	3	46	1.40
55893218--55893357	47	3.0	47	67	17	139	48	4	2	44	1.37
55902849--55902878	12	2.6	12	94	5	53	50	0	0	50	1.00
55906474--55906502	6	4.8	6	100	0	58	0	68	0	31	0.89
55910013--55910305	120	2.4	120	94	2	500	41	3	4	50	1.39
55910138--55910179	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55910267--55910308	15	2.7	16	82	14	52	45	0	2	52	1.13
55910258--55910299	15	2.9	15	82	10	52	47	0	0	52	1.00
55910242--55910558	157	2.0	157	94	1	555	47	5	3	43	1.41
55910610--55910700	45	2.0	45	85	2	121	37	28	6	27	1.82
55910681--55910749	16	4.2	16	96	3	129	37	37	0	24	1.56
55910681--55910749	33	2.1	32	97	2	129	37	37	0	24	1.56
55912099--55912155	21	2.5	22	91	8	89	42	8	0	49	1.34
55912728--55912806	38	2.1	36	81	9	88	34	5	2	58	1.34
55912803--55912847	21	2.2	21	88	4	65	35	2	8	53	1.45
55912886--55912926	18	2.4	17	87	4	55	31	2	2	63	1.20
55914614--55914681	29	2.3	29	84	2	82	29	7	2	60	1.39
55915744--55915805	29	2.0	32	84	9	85	46	1	4	46	1.33
55916221--55916377	57	2.8	57	98	0	296	26	23	35	15	1.94
55919929--55919998	8	8.4	8	87	6	86	40	21	8	30	1.83
55919930--55919999	9	8.2	9	87	7	85	38	21	8	31	1.83
55920045--55920142	17	5.4	17	65	13	61	48	14	4	32	1.62
55920015--55920151	20	7.3	19	64	14	70	48	13	5	32	1.65
55920001--55920164	74	2.2	74	89	2	240	48	14	4	32	1.65
55920002--55920147	37	3.9	37	95	0	256	46	15	5	32	1.68
55922718--55922793	23	3.3	23	66	3	73	46	15	10	27	1.79
55922708--55922815	45	2.4	45	98	0	207	42	15	11	30	1.82
55922741--55922815	22	3.4	22	66	3	60	41	14	12	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55923405--55923470	19	2.9	25	70	25	81	16	3	34	45	1.63
55923412--55923482	23	3.2	23	70	22	69	16	2	33	46	1.62
55923392--55923502	44	2.5	44	88	1	170	19	2	35	42	1.66
55923486--55923510	13	1.9	13	100	0	50	16	0	44	40	1.47
55924503--55924535	14	2.2	15	89	10	50	51	9	6	33	1.58
55925257--55925339	25	3.4	24	75	14	89	31	8	0	60	1.27
55925242--55925339	49	2.0	49	88	7	146	33	7	0	59	1.25
55925239--55925321	35	2.4	34	80	13	89	33	7	0	59	1.25
55925390--55925430	19	2.2	18	86	4	55	43	2	0	53	1.13
55925288--55925462	26	6.6	26	68	16	90	36	10	0	53	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221