genome.fa.s26.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  196  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57333375--57333417	23	2.0	23	86	9	63	27	13	6	51	1.67
57333732--57333766	16	2.3	15	90	5	52	31	2	2	62	1.24
57335156--57335182	14	1.9	14	100	0	54	40	29	7	22	1.81
57335199--57335248	20	2.5	20	86	0	73	42	34	6	18	1.74
57336839--57336879	19	2.2	18	86	4	55	60	2	2	34	1.23
57337083--57337156	31	2.4	31	77	4	78	44	10	13	31	1.78
57337028--57337213	89	2.1	89	81	9	211	52	10	11	25	1.70
57347389--57347434	21	2.2	21	88	0	65	8	30	36	23	1.85
57347700--57347728	2	14.5	2	100	0	58	51	0	48	0	1.00
57354471--57354524	23	2.4	23	78	9	58	42	0	5	51	1.25
57365518--57365549	7	4.6	7	96	0	55	53	0	15	31	1.43
57367696--57367735	21	1.9	21	94	0	71	27	10	22	40	1.86
57370605--57370648	19	2.2	20	81	14	56	36	0	2	61	1.09
57370778--57370825	24	2.0	24	100	0	96	45	16	12	25	1.82
57371080--57371568	172	2.8	168	78	7	459	31	11	8	48	1.70
57371267--57371941	371	1.8	374	81	6	859	31	13	8	46	1.73
57378866--57378943	41	1.9	41	81	5	95	37	8	7	46	1.64
57386430--57386486	28	2.0	28	100	0	114	50	14	3	31	1.59
57386630--57386659	7	4.3	7	100	0	60	43	30	13	13	1.82
57393904--57393946	2	21.5	2	100	0	86	48	0	51	0	1.00
57399658--57399690	15	2.1	16	88	5	50	39	6	0	54	1.25
57400043--57400110	10	6.9	10	71	18	54	41	1	0	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57400012--57400075	17	3.3	17	75	25	56	34	3	0	62	1.11
57400053--57400112	31	1.9	31	93	6	104	40	1	0	58	1.08
57400589--57401023	237	1.8	235	82	3	561	45	8	12	33	1.72
57404706--57404764	28	2.0	30	90	9	95	30	13	25	30	1.94
57406677--57407347	114	5.9	114	92	0	1117	32	15	25	26	1.96
57407267--57407423	76	2.1	75	92	1	260	38	16	21	22	1.92
57409242--57409282	17	2.3	19	83	8	59	29	46	2	21	1.64
57410813--57410864	27	2.0	26	85	11	70	42	5	9	42	1.61
57411097--57411330	9	25.8	9	76	6	204	49	16	2	31	1.61
57411172--57411284	37	3.1	37	84	2	122	49	18	1	30	1.58
57411152--57411351	91	2.2	91	88	1	267	49	17	2	30	1.60
57417196--57417297	51	2.0	52	88	1	152	28	21	20	29	1.98
57423203--57423276	37	2.0	38	81	7	89	51	0	5	43	1.24
57423924--57423996	9	8.1	9	90	0	119	28	10	15	45	1.80
57423924--57423996	18	4.1	18	98	0	137	28	10	15	45	1.80
57433335--57433432	11	8.3	11	72	20	56	42	3	30	23	1.69
57433315--57433436	22	5.8	21	69	22	69	45	2	27	24	1.66
57434335--57434408	33	2.4	30	80	14	73	50	12	12	25	1.74
57434335--57434400	33	2.0	33	88	5	98	50	13	13	22	1.77
57434452--57434510	21	2.8	21	77	15	59	47	1	1	49	1.21
57435582--57435617	12	3.1	11	88	11	54	58	2	2	36	1.27
57436933--57436996	33	1.9	33	90	6	103	53	12	12	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57437048--57437106	21	2.8	21	77	15	59	47	1	1	49	1.21
57437126--57437162	16	2.3	17	81	13	51	40	0	2	56	1.13
57437260--57437315	31	1.9	31	85	10	82	46	0	0	53	1.00
57437540--57437566	14	1.9	14	100	0	54	44	14	0	40	1.46
57438514--57438562	16	2.9	17	82	11	57	61	6	2	30	1.32
57439171--57439195	5	5.0	5	100	0	50	60	0	0	40	0.97
57444657--57444700	21	2.1	21	86	0	61	31	9	0	59	1.29
57461205--57461248	18	2.6	17	82	7	54	52	9	20	18	1.72
57462803--57462890	38	2.2	40	86	6	117	36	3	5	54	1.41
57467030--57467067	13	2.9	13	92	0	67	23	10	26	39	1.87
57468395--57468442	20	2.5	19	76	6	51	62	6	14	16	1.51
57469593--57469633	17	2.5	17	85	14	59	17	2	0	80	0.82
57474835--57474887	22	2.4	22	87	0	70	52	1	1	43	1.23
57474861--57474898	16	2.4	16	90	0	58	47	2	7	42	1.46
57474891--57475045	59	2.6	59	100	0	310	40	4	8	47	1.54
57474895--57475084	59	3.0	63	90	6	271	41	5	8	45	1.57
57475027--57475054	9	3.1	9	100	0	56	32	0	10	57	1.33
57477786--57477840	29	2.0	28	82	7	67	12	21	5	60	1.53
57510872--57511057	30	6.2	30	94	0	309	25	25	36	12	1.91
57512358--57512392	15	2.3	15	90	0	52	31	22	0	45	1.53
57515036--57515288	125	2.0	125	92	0	425	28	16	24	31	1.96
57517301--57517357	27	2.1	27	100	0	114	42	22	17	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57518517--57518573	25	2.3	25	93	3	98	43	14	0	42	1.44
57518489--57518618	69	1.9	70	93	1	226	50	13	0	36	1.43
57518541--57518628	45	2.0	45	90	0	140	52	13	0	34	1.41
57519047--57519086	18	2.2	18	95	0	71	40	7	30	22	1.81
57525013--57525121	24	4.6	23	69	21	73	48	0	11	39	1.45
57525279--57525337	3	20.0	3	78	16	61	66	1	0	32	1.02
57525279--57525335	10	6.0	10	75	19	59	66	1	0	31	1.02
57525306--57525350	19	2.2	19	84	11	54	66	2	4	26	1.22
57526671--57527005	86	3.9	86	72	8	250	28	22	18	29	1.98
57526999--57527509	100	5.1	100	84	3	636	25	23	20	29	1.99
57527083--57527459	50	7.6	50	67	8	221	25	23	20	30	1.99
57526999--57527508	199	2.6	200	87	3	715	25	23	20	29	1.99
57527596--57527701	50	2.1	49	79	5	113	27	23	22	26	2.00
57527702--57527880	88	2.0	88	86	2	252	22	25	24	28	1.99
57529057--57529100	15	3.1	15	87	12	58	13	18	0	68	1.22
57529059--57529100	7	6.0	7	79	20	52	14	16	0	69	1.20
57529100--57529223	61	2.0	61	98	0	239	14	25	12	47	1.80
57534080--57534188	24	4.6	23	69	21	73	48	0	11	39	1.45
57539838--57539863	5	5.2	5	100	0	52	38	0	0	61	0.96
57545152--57545228	37	2.1	36	83	7	93	38	9	1	50	1.42
57546023--57546232	95	2.2	95	87	2	303	45	2	16	36	1.60
57546294--57546693	126	3.2	125	90	1	604	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57550372--57550412	18	2.3	18	82	0	55	41	4	29	24	1.75
57551039--57551068	7	4.4	7	95	4	53	60	13	0	26	1.34
57551032--57551065	14	2.4	15	85	14	54	58	14	0	26	1.36
57562029--57562152	30	4.1	30	93	1	203	25	24	6	43	1.78
57562039--57562146	15	7.2	15	67	12	78	25	22	7	44	1.79
57566709--57566802	30	3.1	30	90	1	143	25	24	6	43	1.78
57566719--57566796	15	5.2	15	67	11	61	25	21	7	44	1.79
57570844--57570870	14	1.9	14	100	0	54	0	11	0	88	0.50
57579518--57579563	4	11.5	4	100	0	92	23	0	0	76	0.79
57581207--57581420	45	4.8	45	82	5	245	29	17	28	25	1.97
57581207--57581420	90	2.4	90	86	3	288	29	17	28	25	1.97
57582382--57582408	13	2.1	13	100	0	54	40	0	14	44	1.46
57584249--57584288	21	1.9	21	94	0	71	15	27	12	45	1.82
57592941--57592998	24	2.5	23	81	16	66	62	0	5	32	1.18
57593268--57593359	49	1.9	47	93	4	157	31	8	30	29	1.87
57593343--57593375	16	2.1	16	100	0	66	18	24	39	18	1.92
57593295--57593424	65	2.0	65	98	0	251	26	12	33	27	1.92
57593559--57593637	37	2.1	37	90	0	122	24	18	31	25	1.98
57597830--57598244	47	8.6	47	86	6	569	29	30	8	32	1.86
57597944--57598036	31	3.2	30	69	27	92	29	32	8	30	1.87
57597830--57598244	96	4.3	96	88	7	626	29	30	8	32	1.86
57600880--57601120	40	6.1	40	87	2	324	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57601174--57601248	38	2.0	38	86	5	107	24	26	18	30	1.98
57603384--57603836	47	9.6	47	91	1	717	29	29	8	32	1.87
57603384--57603836	96	4.8	94	92	2	717	29	29	8	32	1.87
57603384--57603836	143	3.2	143	94	0	757	29	29	8	32	1.87
57610967--57611261	143	2.1	141	85	2	394	23	18	18	40	1.92
57617298--57617328	12	2.6	12	89	0	53	70	0	29	0	0.87
57618264--57618326	31	2.0	31	84	6	83	52	17	1	28	1.54
57628172--57628218	22	2.1	22	92	0	76	14	19	48	17	1.81
57628151--57628449	149	2.0	145	86	6	411	27	10	46	15	1.78
57629428--57629484	21	2.7	21	94	0	105	42	10	10	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221